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Properties
| Property Name | Value |
|---|
| Product | histidyl-trna synthetase |
| Orig transcript id | gnl|cribi|Naga_100046g1.5123.mrna |
| Orig protein id | gnl|cribi|Naga_100046g1.5123 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:694183..696236 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3558 ID=rna3558|Name=rna3558|organism=Nannochloropsis gaditana|type=mRNA|length=1922bp
AACGGTCAGACACGAGAAGGATACTCCCACGTCCCAGGCGTAATAGGACA
GCTCACTTGAGTCTCCCTACTTTGTCCTGATGCTATCGGGGCAAAAGAAT
TACTTTCTCACGCTCAAATATTTCTTTTTGATAGGATTAGGACTCGCAGT
GTGATCTGGCGGTCTTCCTCTTGTGACGCGCTGTTTGAAGGCTTTAAATG
CGTTCCATCGGTGCAAAAAGGCTTGGCTCAAGCACCCGCACTCAGGACTT
CACCACGTTGTTGGCAGTCTTTTGTGTATTAATGAAGGTCACGACGTGTA
GAGCCTGGCATTATTCTGGTAGAATTGCGACAAGTAGGCAGATGCTCTCA
GGCATTGGTCCCTTGTTACGCCGCAAATCCTTCATCATACATCCTGCCAC
GTCAACAAAGTCAAGGCAACACATTTCCATAACCGCAAACGCCGCCGCTG
AAGGTAGCCGGGGTAGCGCGGCAGTCGCACAAGATTTAAAGAACAGGGAG
ACGCAAAAGGAGAGACAGGGCAAGTTAGATTTAAACCCTCCGCGAGGTAC
ACGAGACTTTTATCCGGAAGACATGCGGACGCGGAGTTGGCTCTTCGAAC
TCTGGCGGCAGGTAGCCCGTGACCACGCGTTCGAGGAATACGACGCACCG
GTCCTTGAATCCGAGGATTTATTTGTCCGCAAGGCTGGAGAGGAAGTCAC
AGAACAGCTGTACAATTTTGAGGACAAAGGGGGTCGACGCGTGGCTTTGC
GGCCTGAAATGACGCCATCGTTGGCAAGGATGGTGATGGCGAAACGCAAT
GGCTTAGTCATGCCGGTCAAGTGGTTTTCATTTCCGCAATGCTGGCGATA
CGAACGTATGACCCGTGGCCGTCGCCGCGAGCACTACCAATGGAACATGG
ACGTATGGGGAGTCTCGGGTGTGGAGGCCGAAGCGGAATTGCTATCTGCG
ATCACGACATTTTTTAAACGCGTGGGCCTCACAGCAGAAGACGTCGGCAT
CAAAGTAAGTAGCCGAGGAGTCCTAGCAGAGGTTCTTGCTGCTTTGGATG
TCCCAGATGCAAAATTTTCGGCGACATGCGTGCTGGTGGACAAGTTGGAA
AAGTTACCGTTAGAGGCGATCCAGGGGGACCTGACAGCGTTAGGTTTGGA
GGAGTCCGTTGTGCGACGATTGCTTGACGTCGTCCAAAGCAGAGACTTCC
CTAGTCTGGAAACAGCGATTGGTGCAAAAAGCACGGCCTTGGCTCAGCTA
CGGCAGTTGTTTGAATACGCCCGGGCATACAATTTCGAGGAATGGTTGGT
CTTGGATGCGTCTGTAGTCAGGGGGCTTGCGTATTACACAGGAATAGTCT
TTGAAGCATTTGATAGGAAAGGAGAACTACGAGCAATATGTGGTGGAGGG
CGGTATGACAAGCTTCTGGAGACCTTCGGAGGGGAGGCCTTGCCTGCTGT
GGGCTTTGGGTTTGGCGACGCTGTAATTATGGAGCTCTTGGAGAGCAAAG
GGCTAGTTCCGTCGCTATCATTGGGTTTGGACGCGCTTGTCTTTGCGATG
GAAGCCGGCCTACAGGGTATCGCAATTAGAGCTGCGACTTCATTGCGCGC
AGCGGGCCTCACAGTAGACTTACAGCTAGAAGCGCGGAAGACCAAATGGG
CTTTGAAGCACGCAGACAGGCTTGGGGCGACGTACGTCGTCATTGTTGGA
CCCGAGGAGGTAGCTGGATGTAACGTTCGAGTGAAGGAAATGGCGACAGG
TCAGCAGCATGTCGTGGCCATCGCGAACTTGGAGTCTTGGATAAGTGCGA
CTTTCACGACGACGTCGCCAGAGAGTGCGTTTGCGGATAGTGTCAACCGT
TCATGACGAGTGCTGAGAACTACCTAGAGGCATGAATGCTAAAGATAAAT
AATCCATGATTGTCTCACCGGT back to topprotein sequence of rna3558 >rna3558-protein ID=rna3558-protein|Name=rna3558|organism=Nannochloropsis gaditana|type=polypeptide|length=553bp
MRSIGAKRLGSSTRTQDFTTLLAVFCVLMKVTTCRAWHYSGRIATSRQML
SGIGPLLRRKSFIIHPATSTKSRQHISITANAAAEGSRGSAAVAQDLKNS
RETQKERQGKLDLNPPRGTRDFYPEDMRTRSWLFELWRQVARDHAFEEYD
APVLESEDLFVRKAGEEVTEQLYNFEDKGGRRVALRPEMTPSLARMVMAK
RNGLVMPVKWFSFPQCWRYERMTRGRRREHYQWNMDVWGVSGVEAEAELL
SAITTFFKRVGLTAEDVGIKVSSRGVLAEVLAALDVPDAKFSATCVLVDK
LEKLPLEAIQGDLTALGLEESVVRRLLDVVQSRDFPSLETAIGAKSTALA
QLRQLFEYARAYNFEEWLVLDASVVRGLAYYTGIVFEAFDRKGELRAICG
GGRYDKLLETFGGEALPAVGFGFGDAVIMELLESKGLVPSLSLGLDALVF
AMEAGLQGIAIRAATSLRAAGLTVDLQLEARKTKWALKHADRLGATYVVI
VGPEEVAGCNVRVKEMATGQQHVVAIANLESWISATFTTTSPESAFADSV
NRS back to topmRNA from alignment at CM002461.1:694183..696236- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3558 ID=rna3558|Name=rna3558|organism=Nannochloropsis gaditana|type=mRNA|length=2054bp|location=Sequence derived from alignment at CM002461.1:694183..696236- (Nannochloropsis gaditana)
AACGGTCAGACACGAGAAGGATACTCCCACGTCCCAGGCGTAATAGGACA
GCTCACTTGAGTCTCCCTACTTTGTCCTGATGCTATCGGGGCAAAAGAAT
TACTTTCTCACGCTCAAATATTTCTTTTTGATAGGATTAGGACTCGCAGT
GTGATCTGGCGGTCTTCCTCTTGTGACGCGCTGTTTGAAGGCTTTAAATG
CGTTCCATCGGTGCAAAAAGGCTTGGCTCAAGCACCCGCACTCAGGACTT
CACCACGTTGTTGGCAGTCTTTTGTGTATTAATGAAGGTCACGACGTGTA
GAGCCTGGCATTATTCTGGTAGAATTGCGACAAGTAGGCAGATGCTCTCA
GGCATTGGTCCCTTGTTACGCCGCAAATCCTTCATCATACATCCTGCCAC
GTCAACAAAGTCAAGGCAACACATTTCCATAACCGCAAACGCCGCCGCTG
AAGGTAGCCGGGGTAGCGCGGCAGTCGCACAAGATTTAAAGAACAGGTGA
AGAGATTACTGAATGAAAAATCATGGTGAAAATAATTGCGCAAGAAAGGA
CAGGGGAAAGCCTTCGCAGAGTGCGCAGGGCATCATGTTTCCCACAATTA
ATTGTTTTTGGGCCCTTTTTGATAGCAGGGAGACGCAAAAGGAGAGACAG
GGCAAGTTAGATTTAAACCCTCCGCGAGGTACACGAGACTTTTATCCGGA
AGACATGCGGACGCGGAGTTGGCTCTTCGAACTCTGGCGGCAGGTAGCCC
GTGACCACGCGTTCGAGGAATACGACGCACCGGTCCTTGAATCCGAGGAT
TTATTTGTCCGCAAGGCTGGAGAGGAAGTCACAGAACAGCTGTACAATTT
TGAGGACAAAGGGGGTCGACGCGTGGCTTTGCGGCCTGAAATGACGCCAT
CGTTGGCAAGGATGGTGATGGCGAAACGCAATGGCTTAGTCATGCCGGTC
AAGTGGTTTTCATTTCCGCAATGCTGGCGATACGAACGTATGACCCGTGG
CCGTCGCCGCGAGCACTACCAATGGAACATGGACGTATGGGGAGTCTCGG
GTGTGGAGGCCGAAGCGGAATTGCTATCTGCGATCACGACATTTTTTAAA
CGCGTGGGCCTCACAGCAGAAGACGTCGGCATCAAAGTAAGTAGCCGAGG
AGTCCTAGCAGAGGTTCTTGCTGCTTTGGATGTCCCAGATGCAAAATTTT
CGGCGACATGCGTGCTGGTGGACAAGTTGGAAAAGTTACCGTTAGAGGCG
ATCCAGGGGGACCTGACAGCGTTAGGTTTGGAGGAGTCCGTTGTGCGACG
ATTGCTTGACGTCGTCCAAAGCAGAGACTTCCCTAGTCTGGAAACAGCGA
TTGGTGCAAAAAGCACGGCCTTGGCTCAGCTACGGCAGTTGTTTGAATAC
GCCCGGGCATACAATTTCGAGGAATGGTTGGTCTTGGATGCGTCTGTAGT
CAGGGGGCTTGCGTATTACACAGGAATAGTCTTTGAAGCATTTGATAGGA
AAGGAGAACTACGAGCAATATGTGGTGGAGGGCGGTATGACAAGCTTCTG
GAGACCTTCGGAGGGGAGGCCTTGCCTGCTGTGGGCTTTGGGTTTGGCGA
CGCTGTAATTATGGAGCTCTTGGAGAGCAAAGGGCTAGTTCCGTCGCTAT
CATTGGGTTTGGACGCGCTTGTCTTTGCGATGGAAGCCGGCCTACAGGGT
ATCGCAATTAGAGCTGCGACTTCATTGCGCGCAGCGGGCCTCACAGTAGA
CTTACAGCTAGAAGCGCGGAAGACCAAATGGGCTTTGAAGCACGCAGACA
GGCTTGGGGCGACGTACGTCGTCATTGTTGGACCCGAGGAGGTAGCTGGA
TGTAACGTTCGAGTGAAGGAAATGGCGACAGGTCAGCAGCATGTCGTGGC
CATCGCGAACTTGGAGTCTTGGATAAGTGCGACTTTCACGACGACGTCGC
CAGAGAGTGCGTTTGCGGATAGTGTCAACCGTTCATGACGAGTGCTGAGA
ACTACCTAGAGGCATGAATGCTAAAGATAAATAATCCATGATTGTCTCAC
CGGT back to topCoding sequence (CDS) from alignment at CM002461.1:694183..696236- >rna3558 ID=rna3558|Name=rna3558|organism=Nannochloropsis gaditana|type=CDS|length=3324bp|location=Sequence derived from alignment at CM002461.1:694183..696236- (Nannochloropsis gaditana)
CAGGGAGACGCAAAAGGAGAGACAGGGCAAGTTAGATTTAAACCCTCCGC
GAGGTACACGAGACTTTTATCCGGAAGACATGCGGACGCGGAGTTGGCTC
TTCGAACTCTGGCGGCAGGTAGCCCGTGACCACGCGTTCGAGGAATACGA
CGCACCGGTCCTTGAATCCGAGGATTTATTTGTCCGCAAGGCTGGAGAGG
AAGTCACAGAACAGCTGTACAATTTTGAGGACAAAGGGGGTCGACGCGTG
GCTTTGCGGCCTGAAATGACGCCATCGTTGGCAAGGATGGTGATGGCGAA
ACGCAATGGCTTAGTCATGCCGGTCAAGTGGTTTTCATTTCCGCAATGCT
GGCGATACGAACGTATGACCCGTGGCCGTCGCCGCGAGCACTACCAATGG
AACATGGACGTATGGGGAGTCTCGGGTGTGGAGGCCGAAGCGGAATTGCT
ATCTGCGATCACGACATTTTTTAAACGCGTGGGCCTCACAGCAGAAGACG
TCGGCATCAAAGTAAGTAGCCGAGGAGTCCTAGCAGAGGTTCTTGCTGCT
TTGGATGTCCCAGATGCAAAATTTTCGGCGACATGCGTGCTGGTGGACAA
GTTGGAAAAGTTACCGTTAGAGGCGATCCAGGGGGACCTGACAGCGTTAG
GTTTGGAGGAGTCCGTTGTGCGACGATTGCTTGACGTCGTCCAAAGCAGA
GACTTCCCTAGTCTGGAAACAGCGATTGGTGCAAAAAGCACGGCCTTGGC
TCAGCTACGGCAGTTGTTTGAATACGCCCGGGCATACAATTTCGAGGAAT
GGTTGGTCTTGGATGCGTCTGTAGTCAGGGGGCTTGCGTATTACACAGGA
ATAGTCTTTGAAGCATTTGATAGGAAAGGAGAACTACGAGCAATATGTGG
TGGAGGGCGGTATGACAAGCTTCTGGAGACCTTCGGAGGGGAGGCCTTGC
CTGCTGTGGGCTTTGGGTTTGGCGACGCTGTAATTATGGAGCTCTTGGAG
AGCAAAGGGCTAGTTCCGTCGCTATCATTGGGTTTGGACGCGCTTGTCTT
TGCGATGGAAGCCGGCCTACAGGGTATCGCAATTAGAGCTGCGACTTCAT
TGCGCGCAGCGGGCCTCACAGTAGACTTACAGCTAGAAGCGCGGAAGACC
AAATGGGCTTTGAAGCACGCAGACAGGCTTGGGGCGACGTACGTCGTCAT
TGTTGGACCCGAGGAGGTAGCTGGATGTAACGTTCGAGTGAAGGAAATGG
CGACAGGTCAGCAGCATGTCGTGGCCATCGCGAACTTGGAGTCTTGGATA
AGTGCGACTTTCACGACGACGTCGCCAGAGAGTGCGTTTGCGGATAGTGT
CAACCGTTCATGAATGCGTTCCATCGGTGCAAAAAGGCTTGGCTCAAGCA
CCCGCACTCAGGACTTCACCACGTTGTTGGCAGTCTTTTGTGTATTAATG
AAGGTCACGACGTGTAGAGCCTGGCATTATTCTGGTAGAATTGCGACAAG
TAGGCAGATGCTCTCAGGCATTGGTCCCTTGTTACGCCGCAAATCCTTCA
TCATACATCCTGCCACGTCAACAAAGTCAAGGCAACACATTTCCATAACC
GCAAACGCCGCCGCTGAAGGTAGCCGGGGTAGCGCGGCAGTCGCACAAGA
TTTAAAGAACAGCAGGGAGACGCAAAAGGAGAGACAGGGCAAGTTAGATT
TAAACCCTCCGCGAGGTACACGAGACTTTTATCCGGAAGACATGCGGACG
CGGAGTTGGCTCTTCGAACTCTGGCGGCAGGTAGCCCGTGACCACGCGTT
CGAGGAATACGACGCACCGGTCCTTGAATCCGAGGATTTATTTGTCCGCA
AGGCTGGAGAGGAAGTCACAGAACAGCTGTACAATTTTGAGGACAAAGGG
GGTCGACGCGTGGCTTTGCGGCCTGAAATGACGCCATCGTTGGCAAGGAT
GGTGATGGCGAAACGCAATGGCTTAGTCATGCCGGTCAAGTGGTTTTCAT
TTCCGCAATGCTGGCGATACGAACGTATGACCCGTGGCCGTCGCCGCGAG
CACTACCAATGGAACATGGACGTATGGGGAGTCTCGGGTGTGGAGGCCGA
AGCGGAATTGCTATCTGCGATCACGACATTTTTTAAACGCGTGGGCCTCA
CAGCAGAAGACGTCGGCATCAAAGTAAGTAGCCGAGGAGTCCTAGCAGAG
GTTCTTGCTGCTTTGGATGTCCCAGATGCAAAATTTTCGGCGACATGCGT
GCTGGTGGACAAGTTGGAAAAGTTACCGTTAGAGGCGATCCAGGGGGACC
TGACAGCGTTAGGTTTGGAGGAGTCCGTTGTGCGACGATTGCTTGACGTC
GTCCAAAGCAGAGACTTCCCTAGTCTGGAAACAGCGATTGGTGCAAAAAG
CACGGCCTTGGCTCAGCTACGGCAGTTGTTTGAATACGCCCGGGCATACA
ATTTCGAGGAATGGTTGGTCTTGGATGCGTCTGTAGTCAGGGGGCTTGCG
TATTACACAGGAATAGTCTTTGAAGCATTTGATAGGAAAGGAGAACTACG
AGCAATATGTGGTGGAGGGCGGTATGACAAGCTTCTGGAGACCTTCGGAG
GGGAGGCCTTGCCTGCTGTGGGCTTTGGGTTTGGCGACGCTGTAATTATG
GAGCTCTTGGAGAGCAAAGGGCTAGTTCCGTCGCTATCATTGGGTTTGGA
CGCGCTTGTCTTTGCGATGGAAGCCGGCCTACAGGGTATCGCAATTAGAG
CTGCGACTTCATTGCGCGCAGCGGGCCTCACAGTAGACTTACAGCTAGAA
GCGCGGAAGACCAAATGGGCTTTGAAGCACGCAGACAGGCTTGGGGCGAC
GTACGTCGTCATTGTTGGACCCGAGGAGGTAGCTGGATGTAACGTTCGAG
TGAAGGAAATGGCGACAGGTCAGCAGCATGTCGTGGCCATCGCGAACTTG
GAGTCTTGGATAAGTGCGACTTTCACGACGACGTCGCCAGAGAGTGCGTT
TGCGGATAGTGTCAACCGTTCATGAATGCGTTCCATCGGTGCAAAAAGGC
TTGGCTCAAGCACCCGCACTCAGGACTTCACCACGTTGTTGGCAGTCTTT
TGTGTATTAATGAAGGTCACGACGTGTAGAGCCTGGCATTATTCTGGTAG
AATTGCGACAAGTAGGCAGATGCTCTCAGGCATTGGTCCCTTGTTACGCC
GCAAATCCTTCATCATACATCCTGCCACGTCAACAAAGTCAAGGCAACAC
ATTTCCATAACCGCAAACGCCGCCGCTGAAGGTAGCCGGGGTAGCGCGGC
AGTCGCACAAGATTTAAAGAACAG back to top
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