EWM27172.1, cds3527 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|585109352|gb|EWM27172.1| (50s ribosomal protein l9 [Nannochloropsis gaditana]) HSP 1 Score: 443.351 bits (1139), Expect = 1.594e-157 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 Query: 1 MLGRNSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE 217 MLGRNSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE Sbjct: 1 MLGRNSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE 217
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|553196693|ref|XP_005856401.1| (50s ribosomal protein l9, partial [Nannochloropsis gaditana CCMP526] >gi|422292656|gb|EKU19958.1| 50s ribosomal protein l9, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 434.491 bits (1116), Expect = 8.519e-153 Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0 Query: 5 NSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE 217 NSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE Sbjct: 80 NSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE 292
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|568017658|gb|ETL91835.1| (ribosomal protein L9 [Phytophthora parasitica] >gi|568017659|gb|ETL91836.1| ribosomal protein L9, variant [Phytophthora parasitica]) HSP 1 Score: 79.337 bits (194), Expect = 1.417e-14 Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 Query: 14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164 KP + R+ + + VN+VL ED++ GF G+EV+VK GYARNFL P + AVYAT N+ ++ V + + + LLE+ + R + F R+ A + KL + +++ + KQ V I LP + IK LGE VKV VD Sbjct: 28 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANREKYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 175
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|570983387|gb|ETP43228.1| (ribosomal protein L9 [Phytophthora parasitica P10297] >gi|570983388|gb|ETP43229.1| ribosomal protein L9, variant [Phytophthora parasitica P10297]) HSP 1 Score: 79.337 bits (194), Expect = 1.447e-14 Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 Query: 14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164 KP + R+ + + VN+VL ED++ GF G+EV+VK GYARNFL P + AVYAT N+ ++ V + + + LLE+ + R + F R+ A + KL + +++ + KQ V I LP + IK LGE VKV VD Sbjct: 28 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANREKYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 175
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|570949877|gb|ETP15134.1| (ribosomal protein L9 [Phytophthora parasitica CJ01A1] >gi|570949878|gb|ETP15135.1| ribosomal protein L9, variant [Phytophthora parasitica CJ01A1]) HSP 1 Score: 79.337 bits (194), Expect = 1.621e-14 Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 Query: 14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164 KP + R+ + + VN+VL ED++ GF G+EV+VK GYARNFL P + AVYAT N+ ++ V + + + LLE+ + R + F R+ A + KL + +++ + KQ V I LP + IK LGE VKV VD Sbjct: 28 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANRERYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 175
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|1214705393|gb|OWZ17097.1| (Transmembrane protein [Phytophthora megakarya]) HSP 1 Score: 78.1814 bits (191), Expect = 3.312e-14 Identity = 57/167 (34.13%), Postives = 88/167 (52.69%), Query Frame = 0 Query: 1 MLGRNSLTGTVLSFKPSIIRNLSKK--RMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164 ML R++ + +P ++ L++ V++VL ED+ GF G+EV+VK GYARNFL P + AVYAT N+ ++ V + + + TLLE+ + R + F R+ + KL + +++ + KQ V I LP + IK LGE VKV VD Sbjct: 1 MLARSTTKFVSMLQQPRGVKLLTRSFAHRVDMVLKEDVPKLGFRGDEVSVKAGYARNFLYPEKLAVYATDANREKYKVDKESVDETLLEKEHELEAIVHRLSHIEVVFKRHTSAKTDVKLHSEVNAQNISDMLEKQFDLIVGVARIDLP--TPIKTLGEHTVKVRVD 165
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|301120330|ref|XP_002907892.1| (transmembrane protein, putative [Phytophthora infestans T30-4] >gi|262102923|gb|EEY60975.1| transmembrane protein, putative [Phytophthora infestans T30-4]) HSP 1 Score: 77.0258 bits (188), Expect = 1.008e-13 Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 0 Query: 15 KPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164 KP + R+ + + VN+VL ED+ GF G+EV+VK GYARNFL P + AVYAT+ N+ + V + + + TLLE+ + + F R+ A + KL + +++ + KQ V I LP + IK LGE VKV VD Sbjct: 20 KPLLARSFAHR--VNMVLKEDVPKLGFRGDEVSVKAGYARNFLYPEKLAVYATNANREKFKVDKESVDETLLEKEHELEAIIDGLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 166
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|566022406|gb|ETI45317.1| (ribosomal protein L9 [Phytophthora parasitica P1569] >gi|567959719|gb|ETK85287.1| ribosomal protein L9 [Phytophthora parasitica] >gi|567988458|gb|ETL38735.1| ribosomal protein L9 [Phytophthora parasitica] >gi|570326011|gb|ETO73959.1| ribosomal protein L9 [Phytophthora parasitica P1976]) HSP 1 Score: 78.1814 bits (191), Expect = 1.074e-13 Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 Query: 14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164 KP + R+ + + VN+VL ED++ GF G+EV+VK GYARNFL P + AVYAT N+ ++ V + + + LLE+ + R + F R+ A + KL + +++ + KQ V I LP + IK LGE VKV VD Sbjct: 109 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANREKYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 256
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|568048044|gb|ETM45111.1| (ribosomal protein L9 [Phytophthora parasitica]) HSP 1 Score: 78.1814 bits (191), Expect = 1.211e-13 Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 Query: 14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164 KP + R+ + + VN+VL ED++ GF G+EV+VK GYARNFL P + AVYAT N+ ++ V + + + LLE+ + R + F R+ A + KL + +++ + KQ V I LP + IK LGE VKV VD Sbjct: 109 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANRERYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 256
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|675168447|ref|XP_008893108.1| (ribosomal protein L9 [Phytophthora parasitica INRA-310] >gi|568106676|gb|ETN21306.1| ribosomal protein L9 [Phytophthora parasitica INRA-310]) HSP 1 Score: 78.1814 bits (191), Expect = 1.299e-13 Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 Query: 14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164 KP + R+ + + VN+VL ED++ GF G+EV+VK GYARNFL P + AVYAT N+ ++ V + + + LLE+ + R + F R+ A + KL + +++ + KQ V I LP + IK LGE VKV VD Sbjct: 109 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANRERYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 256 The following BLAST results are available for this feature:
BLAST of EWM27172.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
|