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Properties
| Property Name | Value |
|---|
| Product | 50s ribosomal protein l9 |
| Orig transcript id | gnl|cribi|Naga_100010g96.6142.mrna |
| Orig protein id | gnl|cribi|Naga_100010g96.6142 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002461.1 | supercontig | CM002461.1:627824..628936 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3536 ID=rna3536|Name=rna3536|organism=Nannochloropsis gaditana|type=mRNA|length=6566bp
CTTCTGCCACGACGTACCTCCGAAATACATTTTGTAATTGTCTTCCTGGT
ACCCATTCCAAAAGTTTCACTGTGCATAATTGTCGCAGGTTGATAAATTC
AAGAGACGAATCTCCAAAGCGCAAGGAAAACAAGCACCGACACGTCGGCG
CGGATAATATCCTCGGGTCGCAGTCTTGTCAGGACTTTCAGCAAGAAAAT
ATGTCGCATTGTTCAGGATTTGACGCGATTCCTGAGCCTTGTCCGCTGGT
ATTTGAATTAAATGGTAGACGGATGCAGCTAGCACCAGACTCTTGGAACA
TGTCTATGAGCCTGAATGATTACTTGCGGGCGCAGCCTTCTCTGCGTGGC
ACGGTAGGATTAGTAGGGCTTATTCTCTCAGCGGTTTTCACATTGCAATG
CCTGTTTGAGGATGTGATTTCGTCTCTGCTGTCATTCTGTCTCTTCTGTC
TGTGTTGTCAACTCCTTACCTTTCAATTCCTTTCGCTAAACCGAGCATTA
CTCTCAACATTCCCGCCTAACTCATGAATAAGAAAAATGCATGTGGCGAA
GGAGGCTGTGGTGCTTGTGCCGTAATCATCTCGCGTCCAGGCGGCCAAAA
TATCGGATTATGCACCTACAATTGTCTCGCTGTGAATTCATGCCTGCGGC
CGCTAGCATCTCTGCACGGGTGGAGCGTCAAAACAATCGAAGGGATTCGA
CACAAGTCGCAAGGTGCTGCTCTACAACAGCAATTCTCCCGCTTTAACGC
GTCTCAGTGCGGATTTTGCACGCCAGGAATGGTGATGTCCTTAAGTGCAC
AGTTTGCAAATGACAAAGGAGTGGATACAAAAGGGCGAGCTTCTACAAAG
GCATCCTTGGCGCGCTCGCTAGATGGCAACCTGTGTCGGTGCACCGGCTA
CCGGCCTATACTCGATGCGGCTGAGTCTCTTGTGTCGCCGAAGGAGAGCA
TAGCAGACCTTGAAGACGTAGTAGAGCAGTTAAAATGCTTAAATCCCACC
TCATGTGCCCATGACAGTAGGGGCGACCGCGAAGGAGGACCTCAACATGG
TTCGGCTGGGATTCAAGATGACGTATGTGACTCTGCTGCATTGATTTCTT
GCGCATCACATTTCGAGGGATTTTGTTTGGAAGACAAGAAAGGTGCTCGC
TGGTACCAACCGCGAGATCTTGCACAGTTTTGGTCCGTTCTTGGAAGGCA
CCCCGCCGCCACGGTACTCTGCGGTAACACCGGCCGAAGCGGTGTCTACA
AGCAAGATAACGAAGAAGATGTAGCCCTCGCGGCTCTGGACGGGAATCTA
GCGCTCGCAAATTCGGTGATGGTTTCCTTGCAGGATGTTGTAGAACTCCA
GGGTCACAGCTGGGATGCAGCGACGGGATGCCTTGATATTGGTGCCGGGC
TCACCCTTTCAGAATTGCTTCTCCTTGTAGGCAATCTCCCGGAGGACGCT
TTTTCCTCACATGTGCTTCGAGACGCTATTATCTCCCACCTCTCACGGGT
GGCGGGAACATTGGTGCGGAACGCTGGCACTTTAGGAGGAAATTTGTACA
TGGCAAAGAGCAAAAATTTTGATTCCGACCTCTCGACACTCCTAGGAGGG
CTCGAGGCTGTGGTGCACGTTGTCGGAGGACCGCGACAAAAAGAGGAAGA
ACTCTCTTGGCTAGAGTATTTGAATCGAGGAAACGCTCATGAGAACAATA
TGGGGACAGCGCGACGAGACATCCTGACTCGCATCCGTCTCCGCCTCAAA
ACCCCCCACACTGGGACCTTGTCGGATGTGTTTCAGTCTTACCGCGCTGC
ATTGCGCAAGGGGAACAGCCACGCCTTTGCCAATGCTGCATTTCGTGCAT
CTGTGAATGTGGCAACAGGAAAGTTGGAGAACATCTGCTTGTGTATTGGC
GCTTTAGGTATGCCAGCTTTGCGTGCCATTGAAACTGAGAAAGCTTGGTT
GCGGGGAAGTGCAGAGTCTGTCGCTGTTCATGAGGATGCTTTCGGACAAG
CAACTCTCGAAGCTGCACTTCTTGCATTGCGCATGGAAATAGTTCCTGCT
CATAAGACACGATATCGATACCGTGTGGACCTCTTGTCCTCCTTCTTGTA
CAAATTTTTCCTTTATGTGAAGGACAGGGTATCCCAAGCGTCCCCTTCTC
TCCGATCCTCAACCGCGGCAACTTCTCTATTAAGTGCCCGACTTCGATCG
GCGGCCATCGCTCCTGAGAAGCACGTCGCACTGGCAGATACGGACCAAAC
GTACACGCGGCGGTGGATGGAGAAAGTACCCCAAGTATGTCGCGACGTTC
AAAACGATGCGAACAGCAGCAGCAGCACAAGCGGCGGCCAAAACGATCAC
CTGCCTCATGTGCCTTTGCCCAAGGACTACCAGGGTTTCCAAGCATCCGG
GGAGGCTGAGTACGTATCGGATGTGTTAGAGAGAGAAGGCACCGTGTATG
CGGCCTACGTCAAGAGCCCTCGCTCTCTGGGTGTGCTTGCAGACCTGCGC
ACTGCGGCGGCCAAAGCTCTGCCGGGGGTAGTCTATGTGCTGACAGCTGC
AGACATACCGGGAAGTAACGACAGCGCTTATTCCCTCGGGCCCCCTGATA
GCGTTGCGCCCGACACTGTCTTCGTACCACTTGGTGGACGCGTGTTGTTT
CATTCCCAGCCGCTGGCACTCGTTGTAGGCATATCCTCGGAGGTGGCTCG
ACGAGCAGCCAAGCTTGTGGAGGCTGTTTTTGAGGGTTTTGAGGCTCCCA
TTGTAAGCATTGGGGATGCTCGTGAAGCACGCTCTTTAATGGGCATAAGA
GATTGTGTCAAACGCGGTGATGCCTCTGCTGTACTGGCGGCTGCGCGTTT
GGAGCATGAGAAAGGGGATCCTGAAAGCGGGTTGGATGGGGAATTACGAT
TTATGGAAGGGAAAGTACGCGCTGGCTTCCAGAAGCACTTTTACCTAGAG
ACTCACACAGCCTACGCTATTCCCGACGAAGGGCGAATGTTGATTTATTC
CTCGACTCAAGCTCCGCAGGCGGTTCAAGAGGTTGTAGCTCGCGTATTGG
GAACCTCAATGAATACTGTCCAAGTAAAAATGCGGAGGGCTGGTGGCGCA
TTTGGCGCCAAGGCCACGCGTAACTTGCCTCATGCGGCTGCAGCAGCTGT
GGCTGCCAAAGTATTACGCCGACCAGTGCGTTTGACGTTAGACCGGGCTA
CTGACATGCAGCTTACCGGTTCACGGCACGCTATGGAAGCCGACTATGCA
GTAGCTTACAATTCAGCCACGGGTCTTATCGAGGCAGTCAAATGTGAAAT
TTGGCTAAATGGTGGATTTTGTGCCGATCTATCCTTCACTCCTTGTCATG
ATCTTGCCGCGAACTTGGAGCAAGCCTACTTCATTCCCAATTTCGATGCT
TCCATCGAGGTGCTTCGGACCAATCTGCCTACAAGTACGGCTATGCGAGG
CCCTGGAGTCGTGCAAGCATCCTTCATTATTGAATCAATCCTCGATGATG
TGGCTGCGCGGCTGGGCAGCCACTTCACACCTGAAGAAGTTCGTCGTGTG
AATTTTTTCAGGCAAGACGAAAAGGGAGAAGGCGCGTCGTCGAGCATGAT
AAGTACTGGCTGTCTCCACATGCCAGCCGCACCTGTTAGTCACTTTACTT
TGCCTATTATATGGAATAAGCTAACATCCTCAGCCAACTTGGAAAAGCGT
CGCGAGGATGTTCATTCCTTTAATCGCGCAAATCGCTGGCGTAAGCGTGG
GGTGGCGATGACACCCGTCAAATTTCTTAGTAGTCTCATGCCCATGCAAG
CCACAGTAAACGCATACCCGGATGGGTCGATCTTGATCCATCATGGTGGT
TGTGAGATCGGGCAAGGCATACACGCCAAGAGCGCCCTTGTGGCATTACG
AGCTTTGGCGAAAGTGGGAGTCTTAGCGCCGCCAACTCTGGACATGATTC
AATTCGCTGATACAAATACGGATATTATTCCAAATGGCGGTTTTACCGCG
GCCTCAACTACTTCTGAAAGGGCGTGTGCGGCGGTAGATGCAGCTTGTCA
AGAGCTGGTTAAACGTTTGAAGCCGTTGCGCGATCGATTGCTTCGAAACA
AAGAGAAAGCCCTGTCTCCCGCAAATTCTCTGGAAGGTACAGGTCATGAT
GGTGACGGCTCCGATGGGGGCGATCGTCCGTCTCCAAGCATCTCATGGGT
AGAACTTATTCGCTCAGCCCTTAGTTTTCGAGAGTCCATGGATCTCTGTT
GTCATGCTCAATGGCGTCCGGAACCCGCAAGCCACTACCACAATTATGGC
GCAGGGCTGTCGGAGGTTGAAATCGATGTACTTACGGGAGAAGTGGCGCT
ACGAGCTGCTCACCTTTTGTATGACTGTGGTAAAAGCATAAATCCGGTTG
TGGATTTGGGACAAGTTGAAGGCGCTTTTGTGCAAGGCCTTGGATTTTTC
CTCATGGAAGAAGCTCTTATTGCATCGGACGGCGTGCTTCAATCTCCAGG
AACTTGGGATTACAAACCACCTTTATTACCGGACATGCCATCGGAGTGGA
AAGTGGCTCTGCTTGAGAACGGGAATTTCGACAAAGGCTTTCTTTCCTCC
AAGGCATCTGGTGAGCCACCTCTGATCCTATCCACTTCTGCTATGATGGC
CGTTCGTCGTGCAGTAGTTGCCGCGCGCACCGAACTTTTCGGCGTTGGGG
CGGAAGCTATTAAAAACTTTCGCTTGGATGCTCCGGCGACACCTGAACGT
ATACATCGCGCTTGTGCAGCAAGCATGGGCCGCCTCTCCTTGAACGGAAC
TGCTGGGGAAAGGGCGTGGTTGGATGAAAGTCCACTGCACCAGGTGGATG
TTGCTGTGGCAGGTGCGGGGCTAGGTGGCCTAGCGCTGGCAATCGCCTTA
GATAAGTTAGGTCTCAGTGCGGGTCTCTTTGAAAGGGCCGCGGCGCTACG
AGACGTATCACAAGGCTTAGTTGGTGTAACACCCAACGGATTAAGGGCAT
TGGAGCTGATTGATCCACGTTTGAAAGATTTCGTGATGGAGAGGGGCAAG
TACAATACTGAAGCTTTCACCAAGACAGTTGACGAAGAGGGCAAAATCAC
GGAGCGTTATGTGCAGTTTGAGGCAAACAACGTTAGTATTCCTTGGGCCG
ACATTCAACACTCCCTTGCTCGCTTGGTACCGCGCTCTATGATCCATTGC
AGTCACGACTTTGCCGGCTTTGACGAGTGTGAAGACCATGTCACTATTTA
TTTCAAGAATCGCGTGGAGACAGCCCGTGCAGCGTTGCTAGTGGGCGTTG
ATGGCCTTTTCTCTGTTGTTCGGAAGGGCTTGGTGCCAATTCCTGAGGGT
AGGGGGGATGAAGTCTGCGAGTCAGGCCACACAAACTGGAACGCAATCAT
GAACCCAGGCGAATCCAGTTTGCCATATCCTCATCCGGTAGTGAGCCTGA
CCTACCAGAAAGAAGAACCGCCTCGATTTTTCTTCATGATCGAATGTGGA
CATGGCAGAATCTTGTGGCAGGTACGGGTGGATGATCCTGGCAAGGCATT
TACTGTCGCCCCGAAAAAGGGTCACGGCCGCCTTGGTCTTACAGGTGTAA
AACAGCGCATACTAGACCTTGTGAAAGACGTTCCAGATGTGCAACCGTAT
ATCGCAGCCACACCAGAAGAGAACATTTTTGAACGATGTTTGCTTTTTCG
TAAGTCTTTGCAGCGCTACAGCTCTCCGGGGCGGCGGGTAGTTTTAATGG
GCGATGCAGCCCACGCAATGCACTCTGTGCGCGGCCAGGGGGCCAATATG
ACCTTTGAAGATGCACACTGTCTGGGACTAGCTCTGGCGGCTAAAGGTGT
GGGGCCTGCTGCCGTTCGTGTGTTTGAAAGAGCGCGGATTCCTCGTGCTA
ATCTGGTGCAATGGGAAAGCAATACGTACTACAAACGACAATTTGAGAAA
AATACAAGCCACACGTGGGCTCTAAAATTCCTGAATTTTCAGTCGTATGT
GGCCGATTTTCACAAGCATGAGGCCTTGCCTTCGCACTTGTTGTAATCAG
AGATGTGTGGAATCTGTGCTCTGCACAAGTGTTGCTCTAGCATGGAAGTG
AGAGTGATCGAATTGAATGAATCTGCAATAGGGGTGCTATGATGGAATAG
CTGCGCGATGAGGATGAACAATGGCAGTCAGGCGGGAGCCTGGAAAGGTA
GGAAGCGGATGTAGTCTGCAGATAGAAAGACCACGGGTCGCATTACATTC
AGACATGCAGACAATTTCGGAATGGGGTAATGAAGCATCATCTTATTGTA
TGCATAACAACGAGAATGAACTTACTTAGTCATTGGCGGCTAGTGGATAT
GCGGATGTGCAACTAGCACGGTCGTCCAAGCGGGAAATGTGCATTATATG
TCTTGGAACGATCCAGAGCGTGTTTAAATGGGAGCTTTCGTACAAAGATA
TGGTTCGCCGTAGATTTACAGGAAAATACTGTCGTAGAAGCTCTACATGT
ACTACTCTTGGTCGAATAGATGAACCACCCTAGATAATTGCGACAAGTGG
CGACATCAGGGATACG back to topprotein sequence of rna3536 >rna3536-protein ID=rna3536-protein|Name=rna3536|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MLGRNSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKP
GYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTM
QRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSE
IKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKK
RDRRENGSAEVLEEDSE back to topmRNA from alignment at CM002461.1:627824..628936- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3536 ID=rna3536|Name=rna3536|organism=Nannochloropsis gaditana|type=mRNA|length=1113bp|location=Sequence derived from alignment at CM002461.1:627824..628936- (Nannochloropsis gaditana)
CTTTTAAGTCCATAATAATCACCTCAGCGTCTACCCAATCGCACAGGCAG
GTCACCGAAGGGGGAGTTAGATTTTGTGCTGCACCACTTCTCTGTCAGTG
ACCATGTTGGGACGTAACAGGTAAACATCCTGTGGTTGCCGACCCTGCTC
TTAGTGCATCATCGGCCACTGTCAAGCTTCGAGAAGCCTCCGATGGGATT
GTCCGTCTCCATTCGTGTCTTACAACAGAACCAAATAGAAATTGGACCGA
ATTTTTATGCAATGGCAGGGATTATGAATGTCAATGCAAGCCAAAGTTTT
TCTTGAATCGTTTTCTTCCCTTCATGTGGGCCCCTTATAACAGCCTGACA
GGTACGGTTTTGTCCTTCAAGCCCTCAATTATCCGGAACTTGTCCAAGAA
AAGGATGGTCAACGTTGTTTTACTTGAAGATCTCGCCTTTCGTGGCTTTG
CTGGTGAGGAGGTGGCTGTCAAGCCAGGGTACGCTCGCAATTTCTTGATT
CCAGGACGCAAGGCAGTTTATGCAACGCATGACAACAAATTGCAACACAT
GGTAATGCGTTCGAATGAAGAGCGCACGCTACTGGAAGAACGGCGAGACT
TCCTTTACTTCAAGTCTCGGACCATGCAAAGGGCAATAACTTTCACGAGA
AATGTAGCCGTCGACGGGCAAAAGTTAGAGCACCCTTTGACAAAAGCAGA
CTTGGCCGCAGCTATGCGAAAGCAGCTCAAGCGACATGTGGACGAACAAG
ATATTTGGTTGCCCAAGGGTTCAGAAATAAAAATGTTGGGGGAATTGAAC
GTCAAGGTGGCGGTAGATGTACCCCTACTCATGGTAGAAGAGATGCAAGA
AAGTGCGCAATCAGATGGAGGGAAAAAAAGGGAGATGTTGACAGTCAAAG
TGGCTATACAGAAAGATGAGAAAAAACGTGATAGAAGAGAAAATGGCAGT
GCAGAGGTACTGGAGGAAGACAGCGAGTAAGTAATGGCGCTTATGAAGCA
TGTAAAGGGCCCAGTAAAGAAAAAATTGTAAACGCCTGTCGTATCCCTGA
TGTCGCCACTTGTCGCAATTATCTAGGGTGGTTCATCTATTCGACCAAGA
GTAGTACATGTAG back to topCoding sequence (CDS) from alignment at CM002461.1:627824..628936- >rna3536 ID=rna3536|Name=rna3536|organism=Nannochloropsis gaditana|type=CDS|length=1308bp|location=Sequence derived from alignment at CM002461.1:627824..628936- (Nannochloropsis gaditana)
CCTGACAGGTACGGTTTTGTCCTTCAAGCCCTCAATTATCCGGAACTTGT
CCAAGAAAAGGATGGTCAACGTTGTTTTACTTGAAGATCTCGCCTTTCGT
GGCTTTGCTGGTGAGGAGGTGGCTGTCAAGCCAGGGTACGCTCGCAATTT
CTTGATTCCAGGACGCAAGGCAGTTTATGCAACGCATGACAACAAATTGC
AACACATGGTAATGCGTTCGAATGAAGAGCGCACGCTACTGGAAGAACGG
CGAGACTTCCTTTACTTCAAGTCTCGGACCATGCAAAGGGCAATAACTTT
CACGAGAAATGTAGCCGTCGACGGGCAAAAGTTAGAGCACCCTTTGACAA
AAGCAGACTTGGCCGCAGCTATGCGAAAGCAGCTCAAGCGACATGTGGAC
GAACAAGATATTTGGTTGCCCAAGGGTTCAGAAATAAAAATGTTGGGGGA
ATTGAACGTCAAGGTGGCGGTAGATGTACCCCTACTCATGGTAGAAGAGA
TGCAAGAAAGTGCGCAATCAGATGGAGGGAAAAAAAGGGAGATGTTGACA
GTCAAAGTGGCTATACAGAAAGATGAGAAAAAACGTGATAGAAGAGAAAA
TGGCAGTGCAGAGGTACTGGAGGAAGACAGCGAGTAAATGTTGGGACGTA
ACAGCCTGACAGGTACGGTTTTGTCCTTCAAGCCCTCAATTATCCGGAAC
TTGTCCAAGAAAAGGATGGTCAACGTTGTTTTACTTGAAGATCTCGCCTT
TCGTGGCTTTGCTGGTGAGGAGGTGGCTGTCAAGCCAGGGTACGCTCGCA
ATTTCTTGATTCCAGGACGCAAGGCAGTTTATGCAACGCATGACAACAAA
TTGCAACACATGGTAATGCGTTCGAATGAAGAGCGCACGCTACTGGAAGA
ACGGCGAGACTTCCTTTACTTCAAGTCTCGGACCATGCAAAGGGCAATAA
CTTTCACGAGAAATGTAGCCGTCGACGGGCAAAAGTTAGAGCACCCTTTG
ACAAAAGCAGACTTGGCCGCAGCTATGCGAAAGCAGCTCAAGCGACATGT
GGACGAACAAGATATTTGGTTGCCCAAGGGTTCAGAAATAAAAATGTTGG
GGGAATTGAACGTCAAGGTGGCGGTAGATGTACCCCTACTCATGGTAGAA
GAGATGCAAGAAAGTGCGCAATCAGATGGAGGGAAAAAAAGGGAGATGTT
GACAGTCAAAGTGGCTATACAGAAAGATGAGAAAAAACGTGATAGAAGAG
AAAATGGCAGTGCAGAGGTACTGGAGGAAGACAGCGAGTAAATGTTGGGA
CGTAACAG back to top
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