EWM27172.1, cds3527 (CDS) Nannochloropsis gaditana

Overview
NameEWM27172.1
Unique Namecds3527
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:628817..628833 -
Alignment locationCM002461.1:627957..628593 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27172.1
Product50s ribosomal protein l9
Orig transcript idgnl|cribi|Naga_100010g96.6142.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:628817..628833 -
CM002461.1supercontigCM002461.1:627957..628593 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR009027Ribosomal_L9/RNase_H1_N
IPR000244Ribosomal_L9
IPR020070Ribosomal_L9_N
IPR020594Ribosomal_L9_bac/chp
IPR020069Ribosomal_L9_C
Homology
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|585109352|gb|EWM27172.1| (50s ribosomal protein l9 [Nannochloropsis gaditana])

HSP 1 Score: 443.351 bits (1139), Expect = 1.594e-157
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 
Query:    1 MLGRNSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE 217
            MLGRNSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE
Sbjct:    1 MLGRNSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE 217
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|553196693|ref|XP_005856401.1| (50s ribosomal protein l9, partial [Nannochloropsis gaditana CCMP526] >gi|422292656|gb|EKU19958.1| 50s ribosomal protein l9, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 434.491 bits (1116), Expect = 8.519e-153
Identity = 213/213 (100.00%), Postives = 213/213 (100.00%), Query Frame = 0 
Query:    5 NSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE 217
            NSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE
Sbjct:   80 NSLTGTVLSFKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQKLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVDVPLLMVEEMQESAQSDGGKKREMLTVKVAIQKDEKKRDRRENGSAEVLEEDSE 292
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|568017658|gb|ETL91835.1| (ribosomal protein L9 [Phytophthora parasitica] >gi|568017659|gb|ETL91836.1| ribosomal protein L9, variant [Phytophthora parasitica])

HSP 1 Score: 79.337 bits (194), Expect = 1.417e-14
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 
Query:   14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164
             KP + R+ + +  VN+VL ED++  GF G+EV+VK GYARNFL P + AVYAT  N+ ++ V + + +  LLE+  +      R     + F R+ A   + KL   +   +++  + KQ    V    I LP  + IK LGE  VKV VD
Sbjct:   28 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANREKYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 175
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|570983387|gb|ETP43228.1| (ribosomal protein L9 [Phytophthora parasitica P10297] >gi|570983388|gb|ETP43229.1| ribosomal protein L9, variant [Phytophthora parasitica P10297])

HSP 1 Score: 79.337 bits (194), Expect = 1.447e-14
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 
Query:   14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164
             KP + R+ + +  VN+VL ED++  GF G+EV+VK GYARNFL P + AVYAT  N+ ++ V + + +  LLE+  +      R     + F R+ A   + KL   +   +++  + KQ    V    I LP  + IK LGE  VKV VD
Sbjct:   28 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANREKYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 175
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|570949877|gb|ETP15134.1| (ribosomal protein L9 [Phytophthora parasitica CJ01A1] >gi|570949878|gb|ETP15135.1| ribosomal protein L9, variant [Phytophthora parasitica CJ01A1])

HSP 1 Score: 79.337 bits (194), Expect = 1.621e-14
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 
Query:   14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164
             KP + R+ + +  VN+VL ED++  GF G+EV+VK GYARNFL P + AVYAT  N+ ++ V + + +  LLE+  +      R     + F R+ A   + KL   +   +++  + KQ    V    I LP  + IK LGE  VKV VD
Sbjct:   28 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANRERYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 175
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|1214705393|gb|OWZ17097.1| (Transmembrane protein [Phytophthora megakarya])

HSP 1 Score: 78.1814 bits (191), Expect = 3.312e-14
Identity = 57/167 (34.13%), Postives = 88/167 (52.69%), Query Frame = 0 
Query:    1 MLGRNSLTGTVLSFKPSIIRNLSKK--RMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164
            ML R++     +  +P  ++ L++     V++VL ED+   GF G+EV+VK GYARNFL P + AVYAT  N+ ++ V + + + TLLE+  +      R     + F R+ +     KL   +   +++  + KQ    V    I LP  + IK LGE  VKV VD
Sbjct:    1 MLARSTTKFVSMLQQPRGVKLLTRSFAHRVDMVLKEDVPKLGFRGDEVSVKAGYARNFLYPEKLAVYATDANREKYKVDKESVDETLLEKEHELEAIVHRLSHIEVVFKRHTSAKTDVKLHSEVNAQNISDMLEKQFDLIVGVARIDLP--TPIKTLGEHTVKVRVD 165
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|301120330|ref|XP_002907892.1| (transmembrane protein, putative [Phytophthora infestans T30-4] >gi|262102923|gb|EEY60975.1| transmembrane protein, putative [Phytophthora infestans T30-4])

HSP 1 Score: 77.0258 bits (188), Expect = 1.008e-13
Identity = 56/151 (37.09%), Postives = 82/151 (54.30%), Query Frame = 0 
Query:   15 KPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164
            KP + R+ + +  VN+VL ED+   GF G+EV+VK GYARNFL P + AVYAT+ N+ +  V + + + TLLE+  +            + F R+ A   + KL   +   +++  + KQ    V    I LP  + IK LGE  VKV VD
Sbjct:   20 KPLLARSFAHR--VNMVLKEDVPKLGFRGDEVSVKAGYARNFLYPEKLAVYATNANREKFKVDKESVDETLLEKEHELEAIIDGLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 166
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|566022406|gb|ETI45317.1| (ribosomal protein L9 [Phytophthora parasitica P1569] >gi|567959719|gb|ETK85287.1| ribosomal protein L9 [Phytophthora parasitica] >gi|567988458|gb|ETL38735.1| ribosomal protein L9 [Phytophthora parasitica] >gi|570326011|gb|ETO73959.1| ribosomal protein L9 [Phytophthora parasitica P1976])

HSP 1 Score: 78.1814 bits (191), Expect = 1.074e-13
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 
Query:   14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164
             KP + R+ + +  VN+VL ED++  GF G+EV+VK GYARNFL P + AVYAT  N+ ++ V + + +  LLE+  +      R     + F R+ A   + KL   +   +++  + KQ    V    I LP  + IK LGE  VKV VD
Sbjct:  109 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANREKYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 256
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|568048044|gb|ETM45111.1| (ribosomal protein L9 [Phytophthora parasitica])

HSP 1 Score: 78.1814 bits (191), Expect = 1.211e-13
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 
Query:   14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164
             KP + R+ + +  VN+VL ED++  GF G+EV+VK GYARNFL P + AVYAT  N+ ++ V + + +  LLE+  +      R     + F R+ A   + KL   +   +++  + KQ    V    I LP  + IK LGE  VKV VD
Sbjct:  109 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANRERYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 256
[Close]
BLAST of EWM27172.1 vs. NCBI_GenBank
Match: gi|675168447|ref|XP_008893108.1| (ribosomal protein L9 [Phytophthora parasitica INRA-310] >gi|568106676|gb|ETN21306.1| ribosomal protein L9 [Phytophthora parasitica INRA-310])

HSP 1 Score: 78.1814 bits (191), Expect = 1.299e-13
Identity = 56/152 (36.84%), Postives = 83/152 (54.61%), Query Frame = 0 
Query:   14 FKPSIIRNLSKKRMVNVVLLEDLAFRGFAGEEVAVKPGYARNFLIPGRKAVYATHDNKLQHMVMRSNEERTLLEERRDFLYFKSRTMQRAITFTRNVAVDGQ-KLEHPLTKADLAAAMRKQLKRHVDEQDIWLPKGSEIKMLGELNVKVAVD 164
             KP + R+ + +  VN+VL ED++  GF G+EV+VK GYARNFL P + AVYAT  N+ ++ V + + +  LLE+  +      R     + F R+ A   + KL   +   +++  + KQ    V    I LP  + IK LGE  VKV VD
Sbjct:  109 IKPLLARSFAHR--VNMVLKEDVSNLGFRGDEVSVKAGYARNFLYPEKLAVYATDANRERYKVDKESVDEALLEKEHELEAIIHRLSNIEVVFKRHTAAKTEVKLHSEVNAQNISDMLEKQHGLIVGVARIDLP--TPIKTLGEHTVKVRVD 256
The following BLAST results are available for this feature:
BLAST of EWM27172.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109352|gb|EWM27172.1|1.594e-157100.0050s ribosomal protein l9 [Nannochloropsis gaditana... [more]
gi|553196693|ref|XP_005856401.1|8.519e-153100.0050s ribosomal protein l9, partial [Nannochloropsis... [more]
gi|568017658|gb|ETL91835.1|1.417e-1436.84ribosomal protein L9 [Phytophthora parasitica] >gi... [more]
gi|570983387|gb|ETP43228.1|1.447e-1436.84ribosomal protein L9 [Phytophthora parasitica P102... [more]
gi|570949877|gb|ETP15134.1|1.621e-1436.84ribosomal protein L9 [Phytophthora parasitica CJ01... [more]
gi|1214705393|gb|OWZ17097.1|3.312e-1434.13Transmembrane protein [Phytophthora megakarya][more]
gi|301120330|ref|XP_002907892.1|1.008e-1337.09transmembrane protein, putative [Phytophthora infe... [more]
gi|566022406|gb|ETI45317.1|1.074e-1336.84ribosomal protein L9 [Phytophthora parasitica P156... [more]
gi|568048044|gb|ETM45111.1|1.211e-1336.84ribosomal protein L9 [Phytophthora parasitica][more]
gi|675168447|ref|XP_008893108.1|1.299e-1336.84ribosomal protein L9 [Phytophthora parasitica INRA... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3536rna3536Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications