EWM27218.1, cds3524 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|585109398|gb|EWM27218.1| (hypothetical protein Naga_100010g92 [Nannochloropsis gaditana]) HSP 1 Score: 423.32 bits (1087), Expect = 5.687e-150 Identity = 204/204 (100.00%), Postives = 204/204 (100.00%), Query Frame = 0
Query: 1 MSSVVVSGEQQQTQSTATGDGNNFLGESTASQIIASDTPGTPTGQSLARGSAIDSRIFSTATISNEEELQARADIYQISHRLQNTGDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIGPNFHLNAPYCNITTPIWPCFL 204
MSSVVVSGEQQQTQSTATGDGNNFLGESTASQIIASDTPGTPTGQSLARGSAIDSRIFSTATISNEEELQARADIYQISHRLQNTGDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIGPNFHLNAPYCNITTPIWPCFL
Sbjct: 1 MSSVVVSGEQQQTQSTATGDGNNFLGESTASQIIASDTPGTPTGQSLARGSAIDSRIFSTATISNEEELQARADIYQISHRLQNTGDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIGPNFHLNAPYCNITTPIWPCFL 204
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|765554865|gb|KJE95486.1| (zinc finger family protein [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 72.7886 bits (177), Expect = 1.789e-11 Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 0
Query: 76 YQISHRLQNTGDIL----ILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAI 182
YQ H + G +L +Y+ K ++ HA C H + R + ++YGR A EE+ EA +C + E + VALP H FCE C+++W ERERTCP+CR+ I
Sbjct: 612 YQYFHDDEFGGHVLSSFVTGLYLAFKVSGVVEHASACWHAWRAILRHE-VQYGRYANKEEVMEAGN-QCPICQEE-TKDPVALPCNHIFCEDCVTQWFERERTCPMCRTTI 719
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|754349986|ref|XP_004345525.2| (zinc finger family protein [Capsaspora owczarzaki ATCC 30864]) HSP 1 Score: 72.7886 bits (177), Expect = 1.825e-11 Identity = 42/111 (37.84%), Postives = 61/111 (54.95%), Query Frame = 0
Query: 76 YQISHRLQNTGDIL----ILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAI 182
YQ H + G +L +Y+ K ++ HA C H + R + ++YGR A EE+ EA +C + E + VALP H FCE C+++W ERERTCP+CR+ I
Sbjct: 506 YQYFHDDEFGGHVLSSFVTGLYLAFKVSGVVEHASACWHAWRAILRHE-VQYGRYANKEEVMEAGN-QCPICQEE-TKDPVALPCNHIFCEDCVTQWFERERTCPMCRTTI 613
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|970654652|gb|KUF92935.1| (hypothetical protein AM588_10003859 [Phytophthora nicotianae]) HSP 1 Score: 68.9366 bits (167), Expect = 1.985e-11 Identity = 37/101 (36.63%), Postives = 57/101 (56.44%), Query Frame = 0
Query: 83 QNTGDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
+ D+ Y+ +K L+L R ILA + LE+G T +EL EA + +C + YE + V L +H FCE C++EW + ER+CPLCR+++G
Sbjct: 25 KFMADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 123
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|570970494|gb|ETP33613.1| (hypothetical protein F442_17886 [Phytophthora parasitica P10297]) HSP 1 Score: 72.0182 bits (175), Expect = 3.030e-11 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
D+ Y+ +K L+L R ILA + LE+G T +EL EA + +C + YE + V L +H FCE C++EW + ER+CPLCR+++G
Sbjct: 497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|675207537|ref|XP_008912653.1| (hypothetical protein PPTG_16653 [Phytophthora parasitica INRA-310] >gi|568087097|gb|ETN01972.1| hypothetical protein PPTG_16653 [Phytophthora parasitica INRA-310]) HSP 1 Score: 72.0182 bits (175), Expect = 3.059e-11 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
D+ Y+ +K L+L R ILA + LE+G T +EL EA + +C + YE + V L +H FCE C++EW + ER+CPLCR+++G
Sbjct: 497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|567978854|gb|ETL29340.1| (hypothetical protein L916_17454 [Phytophthora parasitica]) HSP 1 Score: 72.0182 bits (175), Expect = 3.088e-11 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
D+ Y+ +K L+L R ILA + LE+G T +EL EA + +C + YE + V L +H FCE C++EW + ER+CPLCR+++G
Sbjct: 497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|970654506|gb|KUF92809.1| (RING finger and transmembrane domain-containing protein 2 [Phytophthora nicotianae]) HSP 1 Score: 72.0182 bits (175), Expect = 3.178e-11 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
D+ Y+ +K L+L R ILA + LE+G T +EL EA + +C + YE + V L +H FCE C++EW + ER+CPLCR+++G
Sbjct: 497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|570316444|gb|ETO64392.1| (hypothetical protein F444_18065 [Phytophthora parasitica P1976]) HSP 1 Score: 72.0182 bits (175), Expect = 3.208e-11 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
D+ Y+ +K L+L R ILA + LE+G T +EL EA + +C + YE + V L +H FCE C++EW + ER+CPLCR+++G
Sbjct: 497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEECVTEWFDHERSCPLCRASVG 592
BLAST of EWM27218.1 vs. NCBI_GenBank
Match: gi|566012749|gb|ETI35660.1| (hypothetical protein F443_18042 [Phytophthora parasitica P1569] >gi|567950185|gb|ETK75902.1| hypothetical protein L915_17561 [Phytophthora parasitica] >gi|568038264|gb|ETM35801.1| hypothetical protein L914_17355 [Phytophthora parasitica]) HSP 1 Score: 71.633 bits (174), Expect = 3.808e-11 Identity = 37/98 (37.76%), Postives = 56/98 (57.14%), Query Frame = 0
Query: 86 GDILILVYITLKCLVLLRHARGCGHILACMYRPDYLEYGRPATSEELQEAETFECIVGYENLNNNSVALPGAHYFCEPCLSEWCERERTCPLCRSAIG 183
D+ Y+ +K L+L R ILA + LE+G T +EL EA + +C + YE + V L +H FCE C++EW + ER+CPLCR+++G
Sbjct: 497 ADVFTFAYVFIKGLILATQGRRI-FILARSFVTLGLEFGVYVTHDELVEAGSPDCSICYETMRQ-PVKLACSHMFCEGCVTEWFDHERSCPLCRASVG 592 The following BLAST results are available for this feature:
BLAST of EWM27218.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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