rna3529, rna3529 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3529
Unique Name	rna3529
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	309
Alignment location	CM002461.1:610715..612298 -

Link to JBrowse

Properties


Property Name	Value
Product	ribosomal protein s16
Orig transcript id	gnl\|cribi\|Naga_100010g88.6136.mrna
Orig protein id	gnl\|cribi\|Naga_100010g88.6136
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:610715..612298 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g88	gene3399	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3529	rna3529-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27166.1	cds3520	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:610715..612298-
coding sequence from alignment at CM002461.1:610715..612298-

mRNA sequence

>rna3529 ID=rna3529|Name=rna3529|organism=Nannochloropsis gaditana|type=mRNA|length=309bp
ATGGTTTTTGATGACTGCGTGGGGAGACGGGCCTGGGTGGAGGTGACATG
TCGTTCACATAGTCGTCCCATCATCGGTGCTACAGCGACGAACCTACACC
GCATTGCTCCCTTTTTGCTGTGGACATTTCTTAAGAGTTTTGACGGTGCT
TTGTTTCGAGCTTTTCTGTGCTTGGAAAAGAAATGGATTAACGGCTCGCC
TGAAGCAATCCACAAACGGATAAATTCTTGGGTGAGCTCTCTCATTGCAA
ACTCCAAGATACGGTCGTTGCGTTCTAAATTCCCTCTCAAACAAAATCGA
GAGACGTGA

protein sequence of rna3529

>rna3529-protein ID=rna3529-protein|Name=rna3529|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKIL
EPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDE
AKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR

mRNA from alignment at CM002461.1:610715..612298-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3529 ID=rna3529|Name=rna3529|organism=Nannochloropsis gaditana|type=mRNA|length=1584bp|location=Sequence derived from alignment at CM002461.1:610715..612298- (Nannochloropsis gaditana)
AGGTCCCCTTCTTCACCTTGCCCACGACCCGGTCCTTGGTCTGGACACAG
CAAATCAGGCCAAGGCCATGGCCTGCCATGCTTGAGCAGGACGGCGTAGG
CCCCATTCGACGGGCCTTGGCTCACTTCAAACGGCATCCTGGGTGCATGG
CCATCCGTGTTCGACAGCCGTCATATGCTCATGCTCACCGCCCCATCCCT
TTAATTCGACGTCACAGAACGCATGGCAGAAGAGTTGCGATCGGTACAGG
TCTTTGGCCGCAAGGTATGTCGTGAGAGGGAAGCAAGTTTGGCGCTGGGA
TTAGTAGGCTAAGTTAAAGGAATGTGGAGATGTCTGCTGATGGCGGAAAG
GGAAAGTAATGGTTTCCAAGCACGTGACAGCAAGTAGGTCCAGTCGATCA
CTGCCGTTTAAGTTTTGTGCTTGCTCTTTAATGTAGCGAATACGTTTAGA
ATTCTCGACATGAGTAATTGGCTTGCATCCCATTGAGAGGAACATCGTGT
AGTGGGACAGAGACACGAGTCATGCCATTCTGTCTGTGACTGAACGACAG
CTTTCGGAGATGTTTTTGTGTTTTTCTCAAAGCTCTCCCCGCGTGTGGTG
TCTTGAGCCTGTTTTGGGCTGTGAACATGTAACGCCCTCAAATTTGTCCT
TCGCCTCGCAAAACATAGAAAACGGCTACAGCAGTTGCGTTTGTGAAAGA
CGGGCGTGGCCTCATCAACGTCAATGGAGCGCCCATTGAGAACGTGGAGC
CGGAGCTGCTTCGTTTCAAGATTTTGGAGCCCGTATTGCTACTGAATCAA
GAGACTTTCGCGAAGGTGGATATCCGTGTTCGTGTAAAGGGCGGCGGGCA
CACTGCTCAGATCTATGCGATTCGACAGGCGATCTCCAAGGGCATCGTGG
CTTTTTATCAAAAGTATGTGGATGAGGCGAAGAAGAACGAGTTAAAAGAA
ACCCTGCTTGCGTACGACAGGACCCTTCTAGTCGCCGATCCTCGGCACTG
TGAGCCCAAGAAGTTTGGGGGCCCATCTGCGCGGGCTCGGTATCAGAAGT
CCTACCGCTAGTTCCGGAGAGGACATGCACGAGATGGAAAGAAGGTGGTG
TAGAGATCCAGGGCATGGTAATGAGTGGAGTTCGATAGTGCACTGGTGTG
GGAGGCGACGGATCCTTGGACGCAGCTATTCACCTTAGTGAGAATGGTGT
CCAGACAGGGTTGGTGTGCGGGCGCCTGAGGGCGCAGGATTTCCGAGCAG
ACCGCCAGGAGTGGTGGGTGAGATTGCGCTGCCATTATTGGAAGAAAACA
ATTTGCGTTGAGCCACTTGATCACGTTCAAAACGTAAAAAGTGATTGTTG
TGTCTAGTCCGTTCGTCATGGTGGTCACGTCTCTCGATTTTGTTTCTTTG
GAGCTGGGTGAACACGTCATTAATCTCCTTGTTGAAGATTCATGCGACAA
AACGAGAGGGAATTTAGAACGCAACGACCGTATCTTGGAGTTTGCAATGA
GAGAGCTCACCCAAGAATTTATCCGTTTGTGGATTGCTTCAGGCGAGCCG
TTAATCCATTTCTTTTCCAAGCACAGAAAAGCTC

Coding sequence (CDS) from alignment at CM002461.1:610715..612298-

>rna3529 ID=rna3529|Name=rna3529|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002461.1:610715..612298- (Nannochloropsis gaditana)
AAAACGGCTACAGCAGTTGCGTTTGTGAAAGACGGGCGTGGCCTCATCAA
CGTCAATGGAGCGCCCATTGAGAACGTGGAGCCGGAGCTGCTTCGTTTCA
AGATTTTGGAGCCCGTATTGCTACTGAATCAAGAGACTTTCGCGAAGGTG
GATATCCGTGTTCGTGTAAAGGGCGGCGGGCACACTGCTCAGATCTATGC
GATTCGACAGGCGATCTCCAAGGGCATCGTGGCTTTTTATCAAAAGTATG
TGGATGAGGCGAAGAAGAACGAGTTAAAAGAAACCCTGCTTGCGTACGAC
AGGACCCTTCTAGTCGCCGATCCTCGGCACTGTGAGCCCAAGAAGTTTGG
GGGCCCATCTGCGCGGGCTCGGTATCAGAAGTCCTACCGCTAGATGGCAG
AAGAGTTGCGATCGGTACAGGTCTTTGGCCGCAAGAAAACGGCTACAGCA
GTTGCGTTTGTGAAAGACGGGCGTGGCCTCATCAACGTCAATGGAGCGCC
CATTGAGAACGTGGAGCCGGAGCTGCTTCGTTTCAAGATTTTGGAGCCCG
TATTGCTACTGAATCAAGAGACTTTCGCGAAGGTGGATATCCGTGTTCGT
GTAAAGGGCGGCGGGCACACTGCTCAGATCTATGCGATTCGACAGGCGAT
CTCCAAGGGCATCGTGGCTTTTTATCAAAAGTATGTGGATGAGGCGAAGA
AGAACGAGTTAAAAGAAACCCTGCTTGCGTACGACAGGACCCTTCTAGTC
GCCGATCCTCGGCACTGTGAGCCCAAGAAGTTTGGGGGCCCATCTGCGCG
GGCTCGGTATCAGAAGTCCTACCGCTAGATGGCAGAAGAGTTGCGATCGG
TACAGGTCTTTGGCCGCAAG

Synonyms

Publications