rna3529, rna3529 (mRNA) Nannochloropsis gaditana

Overview
Namerna3529
Unique Namerna3529
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length309
Alignment locationCM002461.1:610715..612298 -

Link to JBrowse

Properties
Property NameValue
Productribosomal protein s16
Orig transcript idgnl|cribi|Naga_100010g88.6136.mrna
Orig protein idgnl|cribi|Naga_100010g88.6136
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:610715..612298 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g88gene3399Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3529rna3529-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27166.1cds3520Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3529 ID=rna3529|Name=rna3529|organism=Nannochloropsis gaditana|type=mRNA|length=309bp
ATGGTTTTTGATGACTGCGTGGGGAGACGGGCCTGGGTGGAGGTGACATG
TCGTTCACATAGTCGTCCCATCATCGGTGCTACAGCGACGAACCTACACC
GCATTGCTCCCTTTTTGCTGTGGACATTTCTTAAGAGTTTTGACGGTGCT
TTGTTTCGAGCTTTTCTGTGCTTGGAAAAGAAATGGATTAACGGCTCGCC
TGAAGCAATCCACAAACGGATAAATTCTTGGGTGAGCTCTCTCATTGCAA
ACTCCAAGATACGGTCGTTGCGTTCTAAATTCCCTCTCAAACAAAATCGA
GAGACGTGA
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protein sequence of rna3529

>rna3529-protein ID=rna3529-protein|Name=rna3529|organism=Nannochloropsis gaditana|type=polypeptide|length=144bp
MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKIL
EPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDE
AKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR
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mRNA from alignment at CM002461.1:610715..612298-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3529 ID=rna3529|Name=rna3529|organism=Nannochloropsis gaditana|type=mRNA|length=1584bp|location=Sequence derived from alignment at CM002461.1:610715..612298- (Nannochloropsis gaditana)
AGGTCCCCTTCTTCACCTTGCCCACGACCCGGTCCTTGGTCTGGACACAG CAAATCAGGCCAAGGCCATGGCCTGCCATGCTTGAGCAGGACGGCGTAGG CCCCATTCGACGGGCCTTGGCTCACTTCAAACGGCATCCTGGGTGCATGG CCATCCGTGTTCGACAGCCGTCATATGCTCATGCTCACCGCCCCATCCCT TTAATTCGACGTCACAGAACGCATGGCAGAAGAGTTGCGATCGGTACAGG TCTTTGGCCGCAAGGTATGTCGTGAGAGGGAAGCAAGTTTGGCGCTGGGA TTAGTAGGCTAAGTTAAAGGAATGTGGAGATGTCTGCTGATGGCGGAAAG GGAAAGTAATGGTTTCCAAGCACGTGACAGCAAGTAGGTCCAGTCGATCA CTGCCGTTTAAGTTTTGTGCTTGCTCTTTAATGTAGCGAATACGTTTAGA ATTCTCGACATGAGTAATTGGCTTGCATCCCATTGAGAGGAACATCGTGT AGTGGGACAGAGACACGAGTCATGCCATTCTGTCTGTGACTGAACGACAG CTTTCGGAGATGTTTTTGTGTTTTTCTCAAAGCTCTCCCCGCGTGTGGTG TCTTGAGCCTGTTTTGGGCTGTGAACATGTAACGCCCTCAAATTTGTCCT TCGCCTCGCAAAACATAGAAAACGGCTACAGCAGTTGCGTTTGTGAAAGA CGGGCGTGGCCTCATCAACGTCAATGGAGCGCCCATTGAGAACGTGGAGC CGGAGCTGCTTCGTTTCAAGATTTTGGAGCCCGTATTGCTACTGAATCAA GAGACTTTCGCGAAGGTGGATATCCGTGTTCGTGTAAAGGGCGGCGGGCA CACTGCTCAGATCTATGCGATTCGACAGGCGATCTCCAAGGGCATCGTGG CTTTTTATCAAAAGTATGTGGATGAGGCGAAGAAGAACGAGTTAAAAGAA ACCCTGCTTGCGTACGACAGGACCCTTCTAGTCGCCGATCCTCGGCACTG TGAGCCCAAGAAGTTTGGGGGCCCATCTGCGCGGGCTCGGTATCAGAAGT CCTACCGCTAGTTCCGGAGAGGACATGCACGAGATGGAAAGAAGGTGGTG TAGAGATCCAGGGCATGGTAATGAGTGGAGTTCGATAGTGCACTGGTGTG GGAGGCGACGGATCCTTGGACGCAGCTATTCACCTTAGTGAGAATGGTGT CCAGACAGGGTTGGTGTGCGGGCGCCTGAGGGCGCAGGATTTCCGAGCAG ACCGCCAGGAGTGGTGGGTGAGATTGCGCTGCCATTATTGGAAGAAAACA ATTTGCGTTGAGCCACTTGATCACGTTCAAAACGTAAAAAGTGATTGTTG TGTCTAGTCCGTTCGTCATGGTGGTCACGTCTCTCGATTTTGTTTCTTTG GAGCTGGGTGAACACGTCATTAATCTCCTTGTTGAAGATTCATGCGACAA AACGAGAGGGAATTTAGAACGCAACGACCGTATCTTGGAGTTTGCAATGA GAGAGCTCACCCAAGAATTTATCCGTTTGTGGATTGCTTCAGGCGAGCCG TTAATCCATTTCTTTTCCAAGCACAGAAAAGCTC
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Coding sequence (CDS) from alignment at CM002461.1:610715..612298-

>rna3529 ID=rna3529|Name=rna3529|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002461.1:610715..612298- (Nannochloropsis gaditana)
AAAACGGCTACAGCAGTTGCGTTTGTGAAAGACGGGCGTGGCCTCATCAA
CGTCAATGGAGCGCCCATTGAGAACGTGGAGCCGGAGCTGCTTCGTTTCA
AGATTTTGGAGCCCGTATTGCTACTGAATCAAGAGACTTTCGCGAAGGTG
GATATCCGTGTTCGTGTAAAGGGCGGCGGGCACACTGCTCAGATCTATGC
GATTCGACAGGCGATCTCCAAGGGCATCGTGGCTTTTTATCAAAAGTATG
TGGATGAGGCGAAGAAGAACGAGTTAAAAGAAACCCTGCTTGCGTACGAC
AGGACCCTTCTAGTCGCCGATCCTCGGCACTGTGAGCCCAAGAAGTTTGG
GGGCCCATCTGCGCGGGCTCGGTATCAGAAGTCCTACCGCTAGATGGCAG
AAGAGTTGCGATCGGTACAGGTCTTTGGCCGCAAGAAAACGGCTACAGCA
GTTGCGTTTGTGAAAGACGGGCGTGGCCTCATCAACGTCAATGGAGCGCC
CATTGAGAACGTGGAGCCGGAGCTGCTTCGTTTCAAGATTTTGGAGCCCG
TATTGCTACTGAATCAAGAGACTTTCGCGAAGGTGGATATCCGTGTTCGT
GTAAAGGGCGGCGGGCACACTGCTCAGATCTATGCGATTCGACAGGCGAT
CTCCAAGGGCATCGTGGCTTTTTATCAAAAGTATGTGGATGAGGCGAAGA
AGAACGAGTTAAAAGAAACCCTGCTTGCGTACGACAGGACCCTTCTAGTC
GCCGATCCTCGGCACTGTGAGCCCAAGAAGTTTGGGGGCCCATCTGCGCG
GGCTCGGTATCAGAAGTCCTACCGCTAGATGGCAGAAGAGTTGCGATCGG
TACAGGTCTTTGGCCGCAAG
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Synonyms
Publications