EWM27166.1, cds3520 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|585109346|gb|EWM27166.1| (ribosomal protein s16 [Nannochloropsis gaditana]) HSP 1 Score: 293.893 bits (751), Expect = 9.271e-101 Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 Query: 1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR Sbjct: 1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|1183355239|gb|ORX82960.1| (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 229.95 bits (585), Expect = 1.961e-75 Identity = 105/140 (75.00%), Postives = 125/140 (89.29%), Query Frame = 0 Query: 5 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 +++VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L+FK+ EP+L+L ++ FA VDIRVRV+GGGHT+QIYAIRQAI+K IVAFYQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR Sbjct: 1 MQAVQTFGRKKTATAVAFCKSGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFANVDIRVRVRGGGHTSQIYAIRQAIAKAIVAFYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|1183352803|gb|ORX80748.1| (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >gi|1183353587|gb|ORX81452.1| 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >gi|1183368962|gb|ORX94974.1| 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >gi|1183372961|gb|ORX98698.1| 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 228.024 bits (580), Expect = 9.004e-75 Identity = 105/140 (75.00%), Postives = 124/140 (88.57%), Query Frame = 0 Query: 5 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 + +VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L+FK+ EP+L+L ++ FA VDIRVRV+GGGHT+QIYAIRQAI+K IVAFYQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR Sbjct: 1 MEAVQTFGRKKTATAVAFCKRGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFADVDIRVRVRGGGHTSQIYAIRQAIAKAIVAFYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|1183365777|gb|ORX92155.1| (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73]) HSP 1 Score: 228.024 bits (580), Expect = 1.050e-74 Identity = 104/140 (74.29%), Postives = 124/140 (88.57%), Query Frame = 0 Query: 5 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 + +VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L+FK+ EP+L+L ++ FA VDIRVRV+GGGHT+QIYAIRQAI+K IVA+YQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR Sbjct: 1 MEAVQTFGRKKTATAVAFCKSGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFANVDIRVRVRGGGHTSQIYAIRQAIAKAIVAYYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|595454745|gb|EXX61063.1| (ribosomal 40S subunit protein S16A [Rhizophagus irregularis DAOM 197198w] >gi|595454746|gb|EXX61064.1| ribosomal 40S subunit protein S16A [Rhizophagus irregularis DAOM 197198w] >gi|595454747|gb|EXX61065.1| ribosomal 40S subunit protein S16A [Rhizophagus irregularis DAOM 197198w] >gi|595454748|gb|EXX61066.1| ribosomal 40S subunit protein S16A [Rhizophagus irregularis DAOM 197198w]) HSP 1 Score: 228.024 bits (580), Expect = 1.185e-74 Identity = 106/138 (76.81%), Postives = 122/138 (88.41%), Query Frame = 0 Query: 7 SVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 SVQ +GRKKTATAVA K G+GLI +NG+PI VEPE+LRFK+ EP+L+L QE FA VDIRVRVKGGGHT+Q+YAIRQAI+K IVAFYQKYVDEA+K E+K+TL+ YDR+LLVADPR CEPKKFGGP ARARYQKSYR Sbjct: 5 SVQTYGRKKTATAVAHCKRGKGLIKINGSPIHLVEPEILRFKVYEPILILGQEKFAGVDIRVRVKGGGHTSQVYAIRQAIAKAIVAFYQKYVDEAQKKEIKDTLIHYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 142
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|470465131|ref|XP_004341583.1| (ribosomal protein S9, putative [Acanthamoeba castellanii str. Neff] >gi|440798429|gb|ELR19497.1| ribosomal protein S9, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 227.254 bits (578), Expect = 2.857e-74 Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0 Query: 6 RSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 +SVQ FGRKKTA AVAFVK GRGLI +NG+PIE VEPE+LR+K+ EP+LLL + F+ VDIR+RVKGGGH +Q+YAIRQA++K IVA+YQKYVDEA K E+KE LL YDR+LLVADPR CEPKKFGGP+ARARYQKSYR Sbjct: 12 KSVQTFGRKKTAVAVAFVKAGRGLIKINGSPIELVEPEVLRYKVFEPILLLGTDKFSGVDIRIRVKGGGHVSQVYAIRQALAKAIVAWYQKYVDEAAKKEIKEVLLTYDRSLLVADPRRCEPKKFGGPAARARYQKSYR 150
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|673042525|ref|XP_008875223.1| (40S ribosomal protein S16 [Aphanomyces invadans] >gi|698795626|ref|XP_009830842.1| 40S ribosomal protein S16 [Aphanomyces astaci] >gi|574114418|gb|ETV79906.1| 40S ribosomal protein S16 [Aphanomyces astaci] >gi|574468896|gb|ETV95912.1| 40S ribosomal protein S16 [Aphanomyces invadans]) HSP 1 Score: 226.868 bits (577), Expect = 3.326e-74 Identity = 107/141 (75.89%), Postives = 123/141 (87.23%), Query Frame = 0 Query: 4 ELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 +++SVQ FGRKK ATAVA+ K+GRGLI VNG PIE VEPE+LR K EP+LLL Q+ FA VDIR+RVKGGGHTAQIYAIRQAI+K +VA++QKYVDEA KNE+K LL+YDRTLLVADPR CE KKFGGPSARAR+QKSYR Sbjct: 6 KIQSVQTFGRKKNATAVAYCKNGRGLIKVNGCPIELVEPEVLRTKTYEPILLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKSLVAYHQKYVDEASKNEIKNILLSYDRTLLVADPRRCEAKKFGGPSARARFQKSYR 146
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|929752947|ref|XP_014151456.1| (40S ribosomal protein S16 [Sphaeroforma arctica JP610] >gi|906945423|gb|KNC77554.1| 40S ribosomal protein S16 [Sphaeroforma arctica JP610]) HSP 1 Score: 225.713 bits (574), Expect = 9.525e-74 Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 0 Query: 1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 MA + SVQ FGRKKTATAVAF K G GLI VNGAPI+ V P++L+ K++EP+L+L ++ FA VDIRVRVKGGGHT+QIYAIRQAI+K IVAFYQKYVDEA K E+K+ LL YDR+LLVADPR CEPKKFGGP ARAR+QKSYR Sbjct: 1 MATTIESVQCFGRKKTATAVAFCKRGSGLIRVNGAPIDLVTPQILKLKVMEPLLILGKDKFADVDIRVRVKGGGHTSQIYAIRQAIAKSIVAFYQKYVDEASKKEIKDLLLRYDRSLLVADPRRCEPKKFGGPGARARFQKSYR 144
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|669145788|ref|XP_008608456.1| (40S ribosomal protein S16 [Saprolegnia diclina VS20] >gi|813187430|ref|XP_012207446.1| 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >gi|813187770|ref|XP_012207464.1| 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >gi|530739887|gb|EQC38129.1| 40S ribosomal protein S16 [Saprolegnia diclina VS20] >gi|641527502|gb|KDO21785.1| 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >gi|641527612|gb|KDO21891.1| 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >gi|1173942306|gb|OQR91330.1| 40S ribosomal protein S16 [Achlya hypogyna]) HSP 1 Score: 225.328 bits (573), Expect = 1.213e-73 Identity = 110/143 (76.92%), Postives = 121/143 (84.62%), Query Frame = 0 Query: 2 AEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 A ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K EPVLLL Q+ FA VDIRVRVKGGGHT+QIYAIRQAI+K IVA+YQKYVDEA K E+K+ LL YDRTLLVADPR CE KKFGGPSARAR+QKSYR Sbjct: 4 ASKIESVQVFGRKKNATAVAYCKRGHGLIKVNGCPIELVEPEILRTKTYEPVLLLGQQRFANVDIRVRVKGGGHTSQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLDYDRTLLVADPRRCEAKKFGGPSARARFQKSYR 146
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|970648853|gb|KUF88277.1| (hypothetical protein AM588_10002001 [Phytophthora nicotianae] >gi|970664816|gb|KUG01636.1| 40S ribosomal protein S16 [Phytophthora nicotianae]) HSP 1 Score: 225.328 bits (573), Expect = 1.309e-73 Identity = 110/144 (76.39%), Postives = 121/144 (84.03%), Query Frame = 0 Query: 1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144 M ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K EPVLLL Q+ FA VDIR+RVKGGGHTAQIYAIRQAI+K IVA+YQKYVDEA K E+K+ LLAYDRTLLVADPR CE KKFGG SARAR+QKSYR Sbjct: 1 MEGKIESVQVFGRKKNATAVAYCKRGHGLIKVNGTPIELVEPEILRVKTYEPVLLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLAYDRTLLVADPRRCEAKKFGGSSARARFQKSYR 144 The following BLAST results are available for this feature:
BLAST of EWM27166.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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