EWM27166.1, cds3520 (CDS) Nannochloropsis gaditana

Overview
NameEWM27166.1
Unique Namecds3520
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:612035..612076 -
Alignment locationCM002461.1:611238..611630 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27166.1
Productribosomal protein s16
Orig transcript idgnl|cribi|Naga_100010g88.6136.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:612035..612076 -
CM002461.1supercontigCM002461.1:611238..611630 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: INTERPRO
TermDefinition
IPR020568Ribosomal_S5_D2-typ_fold
IPR020574Ribosomal_S9_CS
IPR000754Ribosomal_S9
IPR014721Ribosomal_S5_D2-typ_fold_subgr
Homology
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|585109346|gb|EWM27166.1| (ribosomal protein s16 [Nannochloropsis gaditana])

HSP 1 Score: 293.893 bits (751), Expect = 9.271e-101
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR
Sbjct:    1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|1183355239|gb|ORX82960.1| (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 229.95 bits (585), Expect = 1.961e-75
Identity = 105/140 (75.00%), Postives = 125/140 (89.29%), Query Frame = 0 
Query:    5 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            +++VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L+FK+ EP+L+L ++ FA VDIRVRV+GGGHT+QIYAIRQAI+K IVAFYQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    1 MQAVQTFGRKKTATAVAFCKSGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFANVDIRVRVRGGGHTSQIYAIRQAIAKAIVAFYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|1183352803|gb|ORX80748.1| (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >gi|1183353587|gb|ORX81452.1| 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >gi|1183368962|gb|ORX94974.1| 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73] >gi|1183372961|gb|ORX98698.1| 40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 228.024 bits (580), Expect = 9.004e-75
Identity = 105/140 (75.00%), Postives = 124/140 (88.57%), Query Frame = 0 
Query:    5 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            + +VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L+FK+ EP+L+L ++ FA VDIRVRV+GGGHT+QIYAIRQAI+K IVAFYQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    1 MEAVQTFGRKKTATAVAFCKRGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFADVDIRVRVRGGGHTSQIYAIRQAIAKAIVAFYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|1183365777|gb|ORX92155.1| (40S ribosomal protein S16 [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 228.024 bits (580), Expect = 1.050e-74
Identity = 104/140 (74.29%), Postives = 124/140 (88.57%), Query Frame = 0 
Query:    5 LRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            + +VQ FGRKKTATAVAF K G+G+I +NG+PIE VEPE+L+FK+ EP+L+L ++ FA VDIRVRV+GGGHT+QIYAIRQAI+K IVA+YQK+VDEA K E+KE L+AYDRTLLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    1 MEAVQTFGRKKTATAVAFCKSGKGMIRINGSPIELVEPEILKFKVYEPILILGEDKFANVDIRVRVRGGGHTSQIYAIRQAIAKAIVAYYQKFVDEASKKEIKEKLVAYDRTLLVADPRRCEPKKFGGPGARARYQKSYR 140
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|595454745|gb|EXX61063.1| (ribosomal 40S subunit protein S16A [Rhizophagus irregularis DAOM 197198w] >gi|595454746|gb|EXX61064.1| ribosomal 40S subunit protein S16A [Rhizophagus irregularis DAOM 197198w] >gi|595454747|gb|EXX61065.1| ribosomal 40S subunit protein S16A [Rhizophagus irregularis DAOM 197198w] >gi|595454748|gb|EXX61066.1| ribosomal 40S subunit protein S16A [Rhizophagus irregularis DAOM 197198w])

HSP 1 Score: 228.024 bits (580), Expect = 1.185e-74
Identity = 106/138 (76.81%), Postives = 122/138 (88.41%), Query Frame = 0 
Query:    7 SVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            SVQ +GRKKTATAVA  K G+GLI +NG+PI  VEPE+LRFK+ EP+L+L QE FA VDIRVRVKGGGHT+Q+YAIRQAI+K IVAFYQKYVDEA+K E+K+TL+ YDR+LLVADPR CEPKKFGGP ARARYQKSYR
Sbjct:    5 SVQTYGRKKTATAVAHCKRGKGLIKINGSPIHLVEPEILRFKVYEPILILGQEKFAGVDIRVRVKGGGHTSQVYAIRQAIAKAIVAFYQKYVDEAQKKEIKDTLIHYDRSLLVADPRRCEPKKFGGPGARARYQKSYR 142
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|470465131|ref|XP_004341583.1| (ribosomal protein S9, putative [Acanthamoeba castellanii str. Neff] >gi|440798429|gb|ELR19497.1| ribosomal protein S9, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 227.254 bits (578), Expect = 2.857e-74
Identity = 104/139 (74.82%), Postives = 122/139 (87.77%), Query Frame = 0 
Query:    6 RSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            +SVQ FGRKKTA AVAFVK GRGLI +NG+PIE VEPE+LR+K+ EP+LLL  + F+ VDIR+RVKGGGH +Q+YAIRQA++K IVA+YQKYVDEA K E+KE LL YDR+LLVADPR CEPKKFGGP+ARARYQKSYR
Sbjct:   12 KSVQTFGRKKTAVAVAFVKAGRGLIKINGSPIELVEPEVLRYKVFEPILLLGTDKFSGVDIRIRVKGGGHVSQVYAIRQALAKAIVAWYQKYVDEAAKKEIKEVLLTYDRSLLVADPRRCEPKKFGGPAARARYQKSYR 150
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|673042525|ref|XP_008875223.1| (40S ribosomal protein S16 [Aphanomyces invadans] >gi|698795626|ref|XP_009830842.1| 40S ribosomal protein S16 [Aphanomyces astaci] >gi|574114418|gb|ETV79906.1| 40S ribosomal protein S16 [Aphanomyces astaci] >gi|574468896|gb|ETV95912.1| 40S ribosomal protein S16 [Aphanomyces invadans])

HSP 1 Score: 226.868 bits (577), Expect = 3.326e-74
Identity = 107/141 (75.89%), Postives = 123/141 (87.23%), Query Frame = 0 
Query:    4 ELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            +++SVQ FGRKK ATAVA+ K+GRGLI VNG PIE VEPE+LR K  EP+LLL Q+ FA VDIR+RVKGGGHTAQIYAIRQAI+K +VA++QKYVDEA KNE+K  LL+YDRTLLVADPR CE KKFGGPSARAR+QKSYR
Sbjct:    6 KIQSVQTFGRKKNATAVAYCKNGRGLIKVNGCPIELVEPEVLRTKTYEPILLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKSLVAYHQKYVDEASKNEIKNILLSYDRTLLVADPRRCEAKKFGGPSARARFQKSYR 146
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|929752947|ref|XP_014151456.1| (40S ribosomal protein S16 [Sphaeroforma arctica JP610] >gi|906945423|gb|KNC77554.1| 40S ribosomal protein S16 [Sphaeroforma arctica JP610])

HSP 1 Score: 225.713 bits (574), Expect = 9.525e-74
Identity = 106/144 (73.61%), Postives = 123/144 (85.42%), Query Frame = 0 
Query:    1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            MA  + SVQ FGRKKTATAVAF K G GLI VNGAPI+ V P++L+ K++EP+L+L ++ FA VDIRVRVKGGGHT+QIYAIRQAI+K IVAFYQKYVDEA K E+K+ LL YDR+LLVADPR CEPKKFGGP ARAR+QKSYR
Sbjct:    1 MATTIESVQCFGRKKTATAVAFCKRGSGLIRVNGAPIDLVTPQILKLKVMEPLLILGKDKFADVDIRVRVKGGGHTSQIYAIRQAIAKSIVAFYQKYVDEASKKEIKDLLLRYDRSLLVADPRRCEPKKFGGPGARARFQKSYR 144
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|669145788|ref|XP_008608456.1| (40S ribosomal protein S16 [Saprolegnia diclina VS20] >gi|813187430|ref|XP_012207446.1| 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >gi|813187770|ref|XP_012207464.1| 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >gi|530739887|gb|EQC38129.1| 40S ribosomal protein S16 [Saprolegnia diclina VS20] >gi|641527502|gb|KDO21785.1| 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >gi|641527612|gb|KDO21891.1| 40S ribosomal protein S16 [Saprolegnia parasitica CBS 223.65] >gi|1173942306|gb|OQR91330.1| 40S ribosomal protein S16 [Achlya hypogyna])

HSP 1 Score: 225.328 bits (573), Expect = 1.213e-73
Identity = 110/143 (76.92%), Postives = 121/143 (84.62%), Query Frame = 0 
Query:    2 AEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            A ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K  EPVLLL Q+ FA VDIRVRVKGGGHT+QIYAIRQAI+K IVA+YQKYVDEA K E+K+ LL YDRTLLVADPR CE KKFGGPSARAR+QKSYR
Sbjct:    4 ASKIESVQVFGRKKNATAVAYCKRGHGLIKVNGCPIELVEPEILRTKTYEPVLLLGQQRFANVDIRVRVKGGGHTSQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLDYDRTLLVADPRRCEAKKFGGPSARARFQKSYR 146
[Close]
BLAST of EWM27166.1 vs. NCBI_GenBank
Match: gi|970648853|gb|KUF88277.1| (hypothetical protein AM588_10002001 [Phytophthora nicotianae] >gi|970664816|gb|KUG01636.1| 40S ribosomal protein S16 [Phytophthora nicotianae])

HSP 1 Score: 225.328 bits (573), Expect = 1.309e-73
Identity = 110/144 (76.39%), Postives = 121/144 (84.03%), Query Frame = 0 
Query:    1 MAEELRSVQVFGRKKTATAVAFVKDGRGLINVNGAPIENVEPELLRFKILEPVLLLNQETFAKVDIRVRVKGGGHTAQIYAIRQAISKGIVAFYQKYVDEAKKNELKETLLAYDRTLLVADPRHCEPKKFGGPSARARYQKSYR 144
            M  ++ SVQVFGRKK ATAVA+ K G GLI VNG PIE VEPE+LR K  EPVLLL Q+ FA VDIR+RVKGGGHTAQIYAIRQAI+K IVA+YQKYVDEA K E+K+ LLAYDRTLLVADPR CE KKFGG SARAR+QKSYR
Sbjct:    1 MEGKIESVQVFGRKKNATAVAYCKRGHGLIKVNGTPIELVEPEILRVKTYEPVLLLGQQRFANVDIRIRVKGGGHTAQIYAIRQAIAKAIVAYYQKYVDEASKKEIKDILLAYDRTLLVADPRRCEAKKFGGSSARARFQKSYR 144
The following BLAST results are available for this feature:
BLAST of EWM27166.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109346|gb|EWM27166.1|9.271e-101100.00ribosomal protein s16 [Nannochloropsis gaditana][more]
gi|1183355239|gb|ORX82960.1|1.961e-7575.0040S ribosomal protein S16 [Basidiobolus meristospo... [more]
gi|1183352803|gb|ORX80748.1|9.004e-7575.0040S ribosomal protein S16 [Basidiobolus meristospo... [more]
gi|1183365777|gb|ORX92155.1|1.050e-7474.2940S ribosomal protein S16 [Basidiobolus meristospo... [more]
gi|595454745|gb|EXX61063.1|1.185e-7476.81ribosomal 40S subunit protein S16A [Rhizophagus ir... [more]
gi|470465131|ref|XP_004341583.1|2.857e-7474.82ribosomal protein S9, putative [Acanthamoeba caste... [more]
gi|673042525|ref|XP_008875223.1|3.326e-7475.8940S ribosomal protein S16 [Aphanomyces invadans] >... [more]
gi|929752947|ref|XP_014151456.1|9.525e-7473.6140S ribosomal protein S16 [Sphaeroforma arctica JP... [more]
gi|669145788|ref|XP_008608456.1|1.213e-7376.9240S ribosomal protein S16 [Saprolegnia diclina VS2... [more]
gi|970648853|gb|KUF88277.1|1.309e-7376.39hypothetical protein AM588_10002001 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3529rna3529Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications