EWM27229.1, cds3508 (CDS) Nannochloropsis gaditana

Overview
NameEWM27229.1
Unique Namecds3508
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:594469..594525 -
Alignment locationCM002461.1:593667..594368 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27229.1
Productpeptide methionine sulfoxide reductase b5
Orig transcript idgnl|cribi|Naga_100010g75.6199.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:594469..594525 -
CM002461.1supercontigCM002461.1:593667..594368 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0009987cellular process
GO:0019538protein metabolic process
GO:0030091protein repair
GO:0006979response to oxidative stress
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016671oxidoreductase activity, acting on a sulfur group of donors, disulfide as acceptor
GO:0033743peptide-methionine (R)-S-oxide reductase activity
Vocabulary: INTERPRO
TermDefinition
IPR011057Mss4-like
IPR028427Met_Sox_Rdtase
IPR002579Met_Sox_Rdtase_MsrB
Homology
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|585109409|gb|EWM27229.1| (peptide methionine sulfoxide reductase b5 [Nannochloropsis gaditana])

HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0
Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0
Query:    1 MNGCTFYIVIRTSNDEGLFSMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE 252
            MNGCTFYIVIRTSNDEGLFSMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE
Sbjct:    1 MNGCTFYIVIRTSNDEGLFSMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE 252          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|298713345|emb|CBJ49291.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 224.942 bits (572), Expect = 5.690e-71
Identity = 112/189 (59.26%), Postives = 131/189 (69.31%), Query Frame = 0
Query:   67 SAVGARSRSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGT----DAVQPCTYEGPVY 251
            S   A  RS    S L  + +   A    T LA +PAL K K + +WK+ L    ++VLR KATEP  V  A GG+DD   KGTYVC GC+TPLY  + KFDCGCGWPGFWTNI+DAVYE++DADG RCEILCS C GHLGHVFR EGFGNP P+ERHCVNSVS+ F+PEG     DAV+ CTY G V+
Sbjct:    6 STTSAAHRSVHRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDADWKEQLQQNTYQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVE-CTYTGRVF 193          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|1002459012|ref|XP_015663566.1| (hypothetical protein ABB37_01513 [Leptomonas pyrrhocoris] >gi|928120672|gb|KPA85127.1| hypothetical protein ABB37_01513 [Leptomonas pyrrhocoris])

HSP 1 Score: 178.333 bits (451), Expect = 1.074e-52
Identity = 89/167 (53.29%), Postives = 108/167 (64.67%), Query Frame = 0
Query:   75 STTVPSMLF----SRMFATQAQDPATNLAA--KPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235
            +TT PS       +R F  Q    ATN A   +   TK K E EW+  LSP  + +LR K T+P       G +DD   +G YVC  CKTPLYTSAMKF CGCGWPGFW +I+ AV EQ D DG R EI+C+ C+ HLGH+FR+EGF NPPP+ERHCVNS S+ F+P
Sbjct:   26 TTTSPSFASYSSQARSFRFQMPSSATNCAQPNEENGTKDKPESEWRATLSPAEYHILREKGTDP-----VGGKYDDLYDEGEYVCAACKTPLYTSAMKFACGCGWPGFWDSIQKAVREQPDKDGRRVEIVCNACNSHLGHIFRHEGFSNPPPNERHCVNSTSILFIP 187          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|1129193663|gb|OLP98216.1| (Peptide methionine sulfoxide reductase B5 [Symbiodinium microadriaticum])

HSP 1 Score: 183.341 bits (464), Expect = 8.221e-52
Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = 0
Query:  109 TEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGC-----KTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235
            +E+EW + L    +KVLR KATEP        G+DDH   G Y+C+GC     + PLYTS+MKFDCGCGWPGFWTN+KD VYEQRDADG RCEILCS+CDGHLGHVFR EGFG    DERHCVNS+S+ F+P
Sbjct:   33 SEKEWSEKLRTNMWKVLRNKATEPGHRITFPQGFDDHKDSGVYLCSGCYFAGLQVPLYTSSMKFDCGCGWPGFWTNVKDEVYEQRDADGRRCEILCSKCDGHLGHVFRGEGFGY-STDERHCVNSLSLVFLP 163          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|930560127|gb|KPI84299.1| (hypothetical protein ABL78_6642 [Leptomonas seymouri])

HSP 1 Score: 173.711 bits (439), Expect = 1.484e-51
Identity = 83/142 (58.45%), Postives = 99/142 (69.72%), Query Frame = 0
Query:   94 PATNLA-AKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFV 234
            P TN A A    +K K E EW+ IL+P  +++LR K T+P       G +D+   +G YVCT CKTPLYTSAMKF CGCGWPGFW  I  AV EQ D DG R EI+C+ C+ HLGH+FRNEGF NPPP+ERHCVNS S+ FV
Sbjct:    4 PKTNCAQANDGGSKDKPEAEWRAILTPAEYRILREKGTDP-----VGGKYDNFFGEGEYVCTACKTPLYTSAMKFACGCGWPGFWDCIPKAVREQPDKDGRRVEIVCNACNSHLGHIFRNEGFSNPPPNERHCVNSTSITFV 140          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|588318493|emb|CCW62236.1| (unnamed protein product [Phytomonas sp. isolate EM1])

HSP 1 Score: 166.392 bits (420), Expect = 1.765e-48
Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = 0
Query:  113 WKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGT 238
            W+  L+ + ++VLRRKAT+PR      G +D+    G YVC GC TPLY SAMKF CGCGWPGFW  +  AV E+ DADG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVNS S+ F+P+ +
Sbjct:   31 WRAKLTASQYRVLRRKATDPRG-----GHYDNFFGDGMYVCAGCGTPLYASAMKFACGCGWPGFWDCLPKAVREEPDADGMRTEILCNACNGHLGHVFRGEGFKNPPPNERHCVNSSSIMFIPKNS 151          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|594147460|emb|CCW68573.1| (unnamed protein product [Phytomonas sp. isolate Hart1])

HSP 1 Score: 161.384 bits (407), Expect = 4.916e-46
Identity = 72/126 (57.14%), Postives = 92/126 (73.02%), Query Frame = 0
Query:  113 WKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGT 238
            W+  L+ T ++VLR+K+T+PR      G +DD    G YVC GC TPLYTS MKF CGCGWPGFW  +  AV E+ DADG R EI+C+ C+GHLGHVFR+EGF NP P+ERHCVN+ S+ F+P+ +
Sbjct:   66 WRAKLNTTQYRVLRQKSTDPRG-----GSYDDFFGDGIYVCAGCDTPLYTSTMKFACGCGWPGFWDCLPKAVREEPDADGRRTEIICNACNGHLGHVFRHEGFKNPLPNERHCVNNSSIKFIPKNS 186          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|528266909|gb|EPY40285.1| (hypothetical protein AGDE_03643 [Angomonas deanei])

HSP 1 Score: 158.688 bits (400), Expect = 1.154e-45
Identity = 79/142 (55.63%), Postives = 93/142 (65.49%), Query Frame = 0
Query:   96 TNLAAKPALTKVKT--EEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235
            TN A+      VK   + EWK++LSP AF +LR+K T+ R      G  D   A G Y C  C   LYTS MKFDCGCGWPGFW  +  AV E++DADG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVN  S+ F P
Sbjct:    3 TNCASVKEKNGVKDVGDAEWKKLLSPHAFYILRQKGTDARH-----GPLDKCFADGLYYCAACGELLYTSKMKFDCGCGWPGFWDCVPKAVREEQDADGHRSEILCNACNGHLGHVFRGEGFHNPPPNERHCVNDTSLRFEP 139          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|528263252|gb|EPY39141.1| (hypothetical protein AGDE_04788 [Angomonas deanei] >gi|528270397|gb|EPY41440.1| hypothetical protein AGDE_02484 [Angomonas deanei])

HSP 1 Score: 159.073 bits (401), Expect = 1.457e-45
Identity = 79/142 (55.63%), Postives = 93/142 (65.49%), Query Frame = 0
Query:   96 TNLAAKPALTKVKT--EEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235
            TN A+      VK   + EWK++LSP AF +LR+K T+ R      G  D   A G Y C  C   LYTS MKFDCGCGWPGFW  +  AV E++DADG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVN  S+ F P
Sbjct:   22 TNCASVKEKNGVKDVGDAEWKKLLSPHAFYILRQKGTDARH-----GPLDKCFADGLYYCAACGELLYTSKMKFDCGCGWPGFWDCVPKAVREEQDADGHRSEILCNACNGHLGHVFRGEGFHNPPPNERHCVNDTSLRFEP 158          
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|157872006|ref|XP_001684552.1| (conserved hypothetical protein [Leishmania major strain Friedlin] >gi|68127621|emb|CAJ05724.1| conserved hypothetical protein [Leishmania major strain Friedlin])

HSP 1 Score: 157.532 bits (397), Expect = 3.259e-45
Identity = 77/144 (53.47%), Postives = 96/144 (66.67%), Query Frame = 0
Query:   94 PATNLAA--KPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235
            P TN A   +   +K  ++EEW++IL+   + +LR K T+P       G +DD   +G YVC GCKTPLY S+MKF CGCGWPGF+  I   V EQ D DG R EI+C+ C+ HLGHVFR EGF NPPP+ERHCVNS S+ F P
Sbjct:    4 PLTNCAGPQEKDGSKDMSDEEWRRILTAQEYHILREKGTDP-----VGGKYDDVFDEGEYVCAGCKTPLYLSSMKFACGCGWPGFYDCIPKRVREQPDRDGRRVEIVCNVCNSHLGHVFRGEGFRNPPPNERHCVNSTSIIFRP 142          
The following BLAST results are available for this feature:
BLAST of EWM27229.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109409|gb|EWM27229.1|0.000e+0100.00peptide methionine sulfoxide reductase b5 [Nannoch... [more]
gi|298713345|emb|CBJ49291.1|5.690e-7159.26conserved unknown protein [Ectocarpus siliculosus][more]
gi|1002459012|ref|XP_015663566.1|1.074e-5253.29hypothetical protein ABB37_01513 [Leptomonas pyrrh... [more]
gi|1129193663|gb|OLP98216.1|8.221e-5264.39Peptide methionine sulfoxide reductase B5 [Symbiod... [more]
gi|930560127|gb|KPI84299.1|1.484e-5158.45hypothetical protein ABL78_6642 [Leptomonas seymou... [more]
gi|588318493|emb|CCW62236.1|1.765e-4859.52unnamed protein product [Phytomonas sp. isolate EM... [more]
gi|594147460|emb|CCW68573.1|4.916e-4657.14unnamed protein product [Phytomonas sp. isolate Ha... [more]
gi|528266909|gb|EPY40285.1|1.154e-4555.63hypothetical protein AGDE_03643 [Angomonas deanei][more]
gi|528263252|gb|EPY39141.1|1.457e-4555.63hypothetical protein AGDE_04788 [Angomonas deanei]... [more]
gi|157872006|ref|XP_001684552.1|3.259e-4553.47conserved hypothetical protein [Leishmania major s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3517rna3517Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications