EWM27229.1, cds3508 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|585109409|gb|EWM27229.1| (peptide methionine sulfoxide reductase b5 [Nannochloropsis gaditana]) HSP 1 Score: 526.168 bits (1354), Expect = 0.000e+0 Identity = 252/252 (100.00%), Postives = 252/252 (100.00%), Query Frame = 0 Query: 1 MNGCTFYIVIRTSNDEGLFSMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE 252 MNGCTFYIVIRTSNDEGLFSMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE Sbjct: 1 MNGCTFYIVIRTSNDEGLFSMRFSLSFSTIATLSIVQLASCSIRGASGFVSSGAPKKLFWTRSASFSAVGARSRSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPVYE 252
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|298713345|emb|CBJ49291.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 224.942 bits (572), Expect = 5.690e-71 Identity = 112/189 (59.26%), Postives = 131/189 (69.31%), Query Frame = 0 Query: 67 SAVGARSRSTTVPSMLFSRMFATQAQDPATNLAAKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGT----DAVQPCTYEGPVY 251 S A RS S L + + A T LA +PAL K K + +WK+ L ++VLR KATEP V A GG+DD KGTYVC GC+TPLY + KFDCGCGWPGFWTNI+DAVYE++DADG RCEILCS C GHLGHVFR EGFGNP P+ERHCVNSVS+ F+PEG DAV+ CTY G V+ Sbjct: 6 STTSAAHRSVHRSSALNMQFWKPPATSKHTRLAKEPALDKCKPDADWKEQLQQNTYQVLRGKATEPAGVRKASGGFDDVFDKGTYVCAGCRTPLYEDSHKFDCGCGWPGFWTNIQDAVYEEKDADGRRCEILCSGCGGHLGHVFRGEGFGNPEPNERHCVNSVSLAFIPEGKTDGPDAVE-CTYTGRVF 193
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|1002459012|ref|XP_015663566.1| (hypothetical protein ABB37_01513 [Leptomonas pyrrhocoris] >gi|928120672|gb|KPA85127.1| hypothetical protein ABB37_01513 [Leptomonas pyrrhocoris]) HSP 1 Score: 178.333 bits (451), Expect = 1.074e-52 Identity = 89/167 (53.29%), Postives = 108/167 (64.67%), Query Frame = 0 Query: 75 STTVPSMLF----SRMFATQAQDPATNLAA--KPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235 +TT PS +R F Q ATN A + TK K E EW+ LSP + +LR K T+P G +DD +G YVC CKTPLYTSAMKF CGCGWPGFW +I+ AV EQ D DG R EI+C+ C+ HLGH+FR+EGF NPPP+ERHCVNS S+ F+P Sbjct: 26 TTTSPSFASYSSQARSFRFQMPSSATNCAQPNEENGTKDKPESEWRATLSPAEYHILREKGTDP-----VGGKYDDLYDEGEYVCAACKTPLYTSAMKFACGCGWPGFWDSIQKAVREQPDKDGRRVEIVCNACNSHLGHIFRHEGFSNPPPNERHCVNSTSILFIP 187
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|1129193663|gb|OLP98216.1| (Peptide methionine sulfoxide reductase B5 [Symbiodinium microadriaticum]) HSP 1 Score: 183.341 bits (464), Expect = 8.221e-52 Identity = 85/132 (64.39%), Postives = 99/132 (75.00%), Query Frame = 0 Query: 109 TEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGC-----KTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235 +E+EW + L +KVLR KATEP G+DDH G Y+C+GC + PLYTS+MKFDCGCGWPGFWTN+KD VYEQRDADG RCEILCS+CDGHLGHVFR EGFG DERHCVNS+S+ F+P Sbjct: 33 SEKEWSEKLRTNMWKVLRNKATEPGHRITFPQGFDDHKDSGVYLCSGCYFAGLQVPLYTSSMKFDCGCGWPGFWTNVKDEVYEQRDADGRRCEILCSKCDGHLGHVFRGEGFGY-STDERHCVNSLSLVFLP 163
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|930560127|gb|KPI84299.1| (hypothetical protein ABL78_6642 [Leptomonas seymouri]) HSP 1 Score: 173.711 bits (439), Expect = 1.484e-51 Identity = 83/142 (58.45%), Postives = 99/142 (69.72%), Query Frame = 0 Query: 94 PATNLA-AKPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFV 234 P TN A A +K K E EW+ IL+P +++LR K T+P G +D+ +G YVCT CKTPLYTSAMKF CGCGWPGFW I AV EQ D DG R EI+C+ C+ HLGH+FRNEGF NPPP+ERHCVNS S+ FV Sbjct: 4 PKTNCAQANDGGSKDKPEAEWRAILTPAEYRILREKGTDP-----VGGKYDNFFGEGEYVCTACKTPLYTSAMKFACGCGWPGFWDCIPKAVREQPDKDGRRVEIVCNACNSHLGHIFRNEGFSNPPPNERHCVNSTSITFV 140
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|588318493|emb|CCW62236.1| (unnamed protein product [Phytomonas sp. isolate EM1]) HSP 1 Score: 166.392 bits (420), Expect = 1.765e-48 Identity = 75/126 (59.52%), Postives = 92/126 (73.02%), Query Frame = 0 Query: 113 WKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGT 238 W+ L+ + ++VLRRKAT+PR G +D+ G YVC GC TPLY SAMKF CGCGWPGFW + AV E+ DADG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVNS S+ F+P+ + Sbjct: 31 WRAKLTASQYRVLRRKATDPRG-----GHYDNFFGDGMYVCAGCGTPLYASAMKFACGCGWPGFWDCLPKAVREEPDADGMRTEILCNACNGHLGHVFRGEGFKNPPPNERHCVNSSSIMFIPKNS 151
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|594147460|emb|CCW68573.1| (unnamed protein product [Phytomonas sp. isolate Hart1]) HSP 1 Score: 161.384 bits (407), Expect = 4.916e-46 Identity = 72/126 (57.14%), Postives = 92/126 (73.02%), Query Frame = 0 Query: 113 WKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGT 238 W+ L+ T ++VLR+K+T+PR G +DD G YVC GC TPLYTS MKF CGCGWPGFW + AV E+ DADG R EI+C+ C+GHLGHVFR+EGF NP P+ERHCVN+ S+ F+P+ + Sbjct: 66 WRAKLNTTQYRVLRQKSTDPRG-----GSYDDFFGDGIYVCAGCDTPLYTSTMKFACGCGWPGFWDCLPKAVREEPDADGRRTEIICNACNGHLGHVFRHEGFKNPLPNERHCVNNSSIKFIPKNS 186
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|528266909|gb|EPY40285.1| (hypothetical protein AGDE_03643 [Angomonas deanei]) HSP 1 Score: 158.688 bits (400), Expect = 1.154e-45 Identity = 79/142 (55.63%), Postives = 93/142 (65.49%), Query Frame = 0 Query: 96 TNLAAKPALTKVKT--EEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235 TN A+ VK + EWK++LSP AF +LR+K T+ R G D A G Y C C LYTS MKFDCGCGWPGFW + AV E++DADG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVN S+ F P Sbjct: 3 TNCASVKEKNGVKDVGDAEWKKLLSPHAFYILRQKGTDARH-----GPLDKCFADGLYYCAACGELLYTSKMKFDCGCGWPGFWDCVPKAVREEQDADGHRSEILCNACNGHLGHVFRGEGFHNPPPNERHCVNDTSLRFEP 139
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|528263252|gb|EPY39141.1| (hypothetical protein AGDE_04788 [Angomonas deanei] >gi|528270397|gb|EPY41440.1| hypothetical protein AGDE_02484 [Angomonas deanei]) HSP 1 Score: 159.073 bits (401), Expect = 1.457e-45 Identity = 79/142 (55.63%), Postives = 93/142 (65.49%), Query Frame = 0 Query: 96 TNLAAKPALTKVKT--EEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235 TN A+ VK + EWK++LSP AF +LR+K T+ R G D A G Y C C LYTS MKFDCGCGWPGFW + AV E++DADG R EILC+ C+GHLGHVFR EGF NPPP+ERHCVN S+ F P Sbjct: 22 TNCASVKEKNGVKDVGDAEWKKLLSPHAFYILRQKGTDARH-----GPLDKCFADGLYYCAACGELLYTSKMKFDCGCGWPGFWDCVPKAVREEQDADGHRSEILCNACNGHLGHVFRGEGFHNPPPNERHCVNDTSLRFEP 158
BLAST of EWM27229.1 vs. NCBI_GenBank
Match: gi|157872006|ref|XP_001684552.1| (conserved hypothetical protein [Leishmania major strain Friedlin] >gi|68127621|emb|CAJ05724.1| conserved hypothetical protein [Leishmania major strain Friedlin]) HSP 1 Score: 157.532 bits (397), Expect = 3.259e-45 Identity = 77/144 (53.47%), Postives = 96/144 (66.67%), Query Frame = 0 Query: 94 PATNLAA--KPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGTYVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCSECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVP 235 P TN A + +K ++EEW++IL+ + +LR K T+P G +DD +G YVC GCKTPLY S+MKF CGCGWPGF+ I V EQ D DG R EI+C+ C+ HLGHVFR EGF NPPP+ERHCVNS S+ F P Sbjct: 4 PLTNCAGPQEKDGSKDMSDEEWRRILTAQEYHILREKGTDP-----VGGKYDDVFDEGEYVCAGCKTPLYLSSMKFACGCGWPGFYDCIPKRVREQPDRDGRRVEIVCNVCNSHLGHVFRGEGFRNPPPNERHCVNSTSIIFRP 142 The following BLAST results are available for this feature:
BLAST of EWM27229.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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