rna3517, rna3517 (mRNA) Nannochloropsis gaditana

Overview
Namerna3517
Unique Namerna3517
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1941
Alignment locationCM002461.1:593342..594901 -

Link to JBrowse

Properties
Property NameValue
Productpeptide methionine sulfoxide reductase b5
Orig transcript idgnl|cribi|Naga_100010g75.6199.mrna
Orig protein idgnl|cribi|Naga_100010g75.6199
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:593342..594901 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g75gene3387Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3517rna3517-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27229.1cds3508Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3517 ID=rna3517|Name=rna3517|organism=Nannochloropsis gaditana|type=mRNA|length=1941bp
CTTGCCTCCCGCATGCGAAGTGGAAGGCACAGCGCTTGCTTGGGGGAGGG
ACTGGTGTGCGTTACATTGTGTGTGTGAATTCCGCGGAAGGGACAGCTCT
TACCAACGTGGTCAATCGTGTCTTCGGAGGCTTCCCCCAAAATTGACGTG
ACATCTCAACAACCATATGAAACAGAAACCTCGCCTTTGCCGTCTTTGCT
CCTCACCAGGCAAGCACTTTTCTATCTACCAACGATTCAAGCAAAGCAAA
AAGGGTTACAAGATGACAACGTCAATCGGTAGGCTTTGAAGTAGTCTTTG
GGACGTCCAAACTCCTGACAACATCTCGACTCCTAACGTGGCATTCCTAG
TGGCCTAGTGGTGCTCTTTCCGTTCGTATAATTGAATGCTTTCAGGCAAT
CGTGCGCGTTATTCAAGTAAAGACGTAATGTAGCTTGCCTGAATTTTCGA
AGCTACTATTCTTCGTCGCGTCTTGTATACACTTGTCCGGTAGCACCCCG
ACCCCAACTTATCACGGAATTGCTTGGCCCCACTCTGTGTTTCTCCAGGT
CCCCTATTTTCCGCTTTGCCTTGCCGCTTACCGCTCCTTTTCATTGCATC
GTAACACCAATGTCGGCGATCGATTGGTCGTACCATGTTGCTCATGTTAC
ACAACACCTTCCGATAGGCATGATGGACGCAGGTTACTTCGTGGGCCGCA
AGGAAATTGTTGACTGGATAAATGAAACATTGCAGCTGAATCTCACCAAA
GTTGAGCAGACAGCTTCAGGTGCTGTGGCCTGCCAGCTACTAGACCGCAT
CTATCCGGGAAAGGTGCCTTTGAATAAAGTTAATTGGGAAGCCAAGTTGG
ACTACGAGTTCCTTAGTAACTATAAGCTTCTCCAAACTGCATTCACCAAG
CTTCAAATTGACAAGCATTTGCCAGTTGAGAAATTGGTGCGTGCTAAATA
CCAGGATAATTTAGAATTTATGCAATGGTTCAAGCGGTTCTATGAGCTCA
ACAATCCCGCCCTCGACTACGACCCCGTGGTTGCCCGCGCCGGAGGCAAA
GGCGCCGGAGGACCTGCCCGCACCATACCTCCTGCGGCTGCTCCCTTCTG
CTCAAGCACGCGGACGGGAAATATGCCAAGCAATTCTCTTAAAAGCCGAC
CTTCATCTCGAAGCATTGGTAGCAGCACTGGCAGCTCCTCGGGCAATGGT
GGCGCCCGCGACAAGGAAAACAGCGGCGGGGCGATTGCTACATCGTCGAG
TCATGGCGGGAGAAATGTCACGACGGCAGCCGCCGCAACTGTGGCGGACG
AGGCGCTACTGCGAAAAGCGGAGAACTTGGCGCAGGAGAACACGACGTTG
CAGGCGACCATCGAGGGCCTGGAAAAGGAGCGAGACTTTTACTTCGAGAA
ACTGACAGTAGTGGAGGAAATGCTGCAGGAACGGCAAGCAGCAGCGGATG
AGAATTTCTCGCAGGAGGCGTCTCTTCTGATCGAAGAGATCTTTAAGGTC
CTATATGCGACGGAAAACGCCACAGGCCTTAGCGACTGCGATGAGCCGTG
TTCGGAAGCAGCGGCGGCTGTCGAGGCACCGACAGCTGTAGTTTGAGTTT
AAAAGGTGCTGCCGAGAAGCGGAGACCACAAGGCCTGCTGGCTCACACCA
CGCTGGTATTTAGGGAAGACATAAGCGTGGAGGCATGACGTGAAATTAGT
GACGTGGTCACGACTAGGTCGGCATTAAAAAGGTGGGAGAGATTAAACAT
ATATCGAACGAAGGACACCGAAGAATACGAGAAAAGGAAGATGGGGACGG
GTTGAAATGAAGAATTTTTCTTTCGTGCTGAGCGGAAAAGGCAAAGAAGC
CATGAGTCTGAGTTCCAGCGCATTGTCTGCCATTTGTAAGTGACTACTCC
CATAATCCCCTATCAAAGCTTGAAGAAAGCTCTTGATTTTA
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protein sequence of rna3517

>rna3517-protein ID=rna3517-protein|Name=rna3517|organism=Nannochloropsis gaditana|type=polypeptide|length=252bp
MNGCTFYIVIRTSNDEGLFSMRFSLSFSTIATLSIVQLASCSIRGASGFV
SSGAPKKLFWTRSASFSAVGARSRSTTVPSMLFSRMFATQAQDPATNLAA
KPALTKVKTEEEWKQILSPTAFKVLRRKATEPRKVTVAKGGWDDHNAKGT
YVCTGCKTPLYTSAMKFDCGCGWPGFWTNIKDAVYEQRDADGFRCEILCS
ECDGHLGHVFRNEGFGNPPPDERHCVNSVSVGFVPEGTDAVQPCTYEGPV
YE
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mRNA from alignment at CM002461.1:593342..594901-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3517 ID=rna3517|Name=rna3517|organism=Nannochloropsis gaditana|type=mRNA|length=1560bp|location=Sequence derived from alignment at CM002461.1:593342..594901- (Nannochloropsis gaditana)
GCATCCCATCCCGATTCACTTGGGTGCGCTGTATGAAACTGACTCAACGA
CGACGACGACGAGGATTTCATGTGAGTACAGAAACTCGAAGACATGGTGA
GTACCGGGGTTTGCAGGTGTCCTCGACGCTCCTCTCGACTTAAGCCCTCG
GGGTCAAAGCGTCTGACACGTACTTCCGACAGCCAAGTGACCCCTGTCTG
CCATGTCATCTTTATTGGCAGTATTAGCTCTGTACTGACATTTCCAGGGA
GTCCACCTACAGCAACTGTTCCGTGTACATGCCCGACATAATAATTTCCC
CCCTGCCAAAATTACAATTATTCGCAAGACATCTCGCAGTGATAATCATG
TGATATGACTTTATAAGTAGATATGGATGAATGGCTGTACCTTCTACATC
GTAATCCGTACGTCTAATGATGAAGGCCTATTTGTAAGTGCTCAGGTCAA
GTAATGAGACTTGTGAGACTTTCGTCTGTTGTCTCATCCGTATTTAATTT
TCTTCCACGCCATATTTTCTTGAATCATGACAGAGCATGCGGTTTTCCCT
CTCTTTTTCAACCATAGCGACACTCAGCATTGTTCAGCTCGCCTCCTGTT
CCATTCGTGGAGCGAGTGGATTCGTTTCGTCAGGAGCACCCAAAAAACTA
TTCTGGACGCGTTCAGCTAGCTTTTCCGCAGTAGGTGCCCGATCCCGTTC
AACGACGGTACCTTCCATGCTTTTCAGTCGCATGTTTGCTACACAAGCAC
AAGACCCGGCCACGAATTTGGCCGCGAAGCCGGCTTTAACTAAAGTGAAA
ACCGAGGAGGAATGGAAGCAAATTCTGAGCCCCACTGCCTTCAAGGTTCT
CCGGCGCAAAGCCACGGAGCCTCGAAAAGTAACCGTGGCGAAAGGGGGCT
GGGATGACCACAATGCCAAGGGGACATACGTGTGCACAGGGTGCAAGACG
CCTCTATACACGTCGGCCATGAAGTTTGATTGCGGGTGCGGCTGGCCTGG
TTTCTGGACGAACATCAAAGACGCCGTCTACGAGCAGCGAGACGCGGACG
GTTTTCGGTGCGAGATCCTGTGTTCAGAGTGCGACGGGCACCTTGGGCAC
GTTTTCCGCAACGAAGGCTTCGGAAATCCGCCTCCGGATGAGAGGCACTG
CGTAAACTCAGTGTCTGTGGGCTTCGTGCCCGAGGGGACCGATGCGGTCC
AGCCCTGCACGTACGAGGGCCCCGTGTACGAATGAGGTCGCTGATAACAC
TGGAAAATAGATTAAACAGACCAAAGAGTCTTCTTCTGTCGAGCACATGG
CTGTAGTCGCAGGGGGCCAGGAAATGTGCAGGGAATTTTTGATTTGGTGA
ACCATGGTAGTGGACGTCCAACGCTGTATTTCTCTTCTAACAATGGAGCA
TGGGTCTCCTCTAAAATCAAGAGCTTTCTTCAAGCTTTGATAGGGGATTA
TGGGAGTAGTCACTTACAAATGGCAGACAATGCGCTGGAACTCAGACTCA
TGGCTTCTTTGCCTTTTCCGCTCAGCACGAAAGAAAAATTCTTCATTTCA
ACCCGTCCCC
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Coding sequence (CDS) from alignment at CM002461.1:593342..594901-

>rna3517 ID=rna3517|Name=rna3517|organism=Nannochloropsis gaditana|type=CDS|length=1518bp|location=Sequence derived from alignment at CM002461.1:593342..594901- (Nannochloropsis gaditana)
AGCATGCGGTTTTCCCTCTCTTTTTCAACCATAGCGACACTCAGCATTGT
TCAGCTCGCCTCCTGTTCCATTCGTGGAGCGAGTGGATTCGTTTCGTCAG
GAGCACCCAAAAAACTATTCTGGACGCGTTCAGCTAGCTTTTCCGCAGTA
GGTGCCCGATCCCGTTCAACGACGGTACCTTCCATGCTTTTCAGTCGCAT
GTTTGCTACACAAGCACAAGACCCGGCCACGAATTTGGCCGCGAAGCCGG
CTTTAACTAAAGTGAAAACCGAGGAGGAATGGAAGCAAATTCTGAGCCCC
ACTGCCTTCAAGGTTCTCCGGCGCAAAGCCACGGAGCCTCGAAAAGTAAC
CGTGGCGAAAGGGGGCTGGGATGACCACAATGCCAAGGGGACATACGTGT
GCACAGGGTGCAAGACGCCTCTATACACGTCGGCCATGAAGTTTGATTGC
GGGTGCGGCTGGCCTGGTTTCTGGACGAACATCAAAGACGCCGTCTACGA
GCAGCGAGACGCGGACGGTTTTCGGTGCGAGATCCTGTGTTCAGAGTGCG
ACGGGCACCTTGGGCACGTTTTCCGCAACGAAGGCTTCGGAAATCCGCCT
CCGGATGAGAGGCACTGCGTAAACTCAGTGTCTGTGGGCTTCGTGCCCGA
GGGGACCGATGCGGTCCAGCCCTGCACGTACGAGGGCCCCGTGTACGAAT
GAATGAATGGCTGTACCTTCTACATCGTAATCCGTACGTCTAATGATGAA
GGCCTATTTAGCATGCGGTTTTCCCTCTCTTTTTCAACCATAGCGACACT
CAGCATTGTTCAGCTCGCCTCCTGTTCCATTCGTGGAGCGAGTGGATTCG
TTTCGTCAGGAGCACCCAAAAAACTATTCTGGACGCGTTCAGCTAGCTTT
TCCGCAGTAGGTGCCCGATCCCGTTCAACGACGGTACCTTCCATGCTTTT
CAGTCGCATGTTTGCTACACAAGCACAAGACCCGGCCACGAATTTGGCCG
CGAAGCCGGCTTTAACTAAAGTGAAAACCGAGGAGGAATGGAAGCAAATT
CTGAGCCCCACTGCCTTCAAGGTTCTCCGGCGCAAAGCCACGGAGCCTCG
AAAAGTAACCGTGGCGAAAGGGGGCTGGGATGACCACAATGCCAAGGGGA
CATACGTGTGCACAGGGTGCAAGACGCCTCTATACACGTCGGCCATGAAG
TTTGATTGCGGGTGCGGCTGGCCTGGTTTCTGGACGAACATCAAAGACGC
CGTCTACGAGCAGCGAGACGCGGACGGTTTTCGGTGCGAGATCCTGTGTT
CAGAGTGCGACGGGCACCTTGGGCACGTTTTCCGCAACGAAGGCTTCGGA
AATCCGCCTCCGGATGAGAGGCACTGCGTAAACTCAGTGTCTGTGGGCTT
CGTGCCCGAGGGGACCGATGCGGTCCAGCCCTGCACGTACGAGGGCCCCG
TGTACGAATGAATGAATGGCTGTACCTTCTACATCGTAATCCGTACGTCT
AATGATGAAGGCCTATTT
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Synonyms
Publications