rna3516, rna3516 (mRNA) Nannochloropsis gaditana

Overview
Namerna3516
Unique Namerna3516
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1564
Alignment locationCM002461.1:591550..593490 +

Link to JBrowse

Properties
Property NameValue
Productmicrotubule-associated protein rp eb family member 1
Orig transcript idgnl|cribi|Naga_100010g74.6163.mrna
Orig protein idgnl|cribi|Naga_100010g74.6163
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:591550..593490 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g74gene3386Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3516rna3516-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27193.1cds3507Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3516 ID=rna3516|Name=rna3516|organism=Nannochloropsis gaditana|type=mRNA|length=1564bp
GGCAGATTTTGCCTTGCCTCCCGCATGCGAAGTGGAAGGCACAGCGCTTG
CTTGGGGGAGGGACTGGTGTGCGTTACATTGTGTGTGTGAATTCCGCGGA
AGGGACAGCTCTTACCAACGTGGTCAATCGTGTCTTCGGAGGCTTCCCCC
AAAATTGACGTGACATCTCAACAACCATATGAAACAGAAACCTCGCCTTT
GCCGTCTTTGCTCCTCACCAGGCAAGCACTTTTCTATCTACCAACGATTC
AAGCAAAGCAAAAAGGGTTACAAGATGACAACGTCAATCGGCATGATGGA
CGCAGGTTACTTCGTGGGCCGCAAGGAAATTGTTGACTGGATAAATGAAA
CATTGCAGCTGAATCTCACCAAAGTTGAGCAGACAGCTTCAGGTGCTGTG
GCCTGCCAGCTACTAGACCGCATCTATCCGGGAAAGGTGCCTTTGAATAA
AGTTAATTGGGAAGCCAAGTTGGACTACGAGTTCCTTAGTAACTATAAGC
TTCTCCAAACTGCATTCACCAAGCTTCAAATTGACAAGCATTTGCCAGTT
GAGAAATTGGTGCGTGCTAAATACCAGGATAATTTAGAATTTATGCAATG
GTTCAAGCGGTTCTATGAGCTCAACAATCCCGCCCTCGACTACGACCCCG
TGGTTGCCCGCGCCGGAGGCAAAGGCGCCGGAGGACCTGCCCGCACCATA
CCTCCTGCGGCTGCTCCCTTCTGCTCAAGCACGCGGACGGGAAATATGCC
AAGCAATTCTCTTAAAAGCCGACCTTCATCTCGAAGCATTGGTAGCAGCA
CTGGCAGCTCCTCGGGCAATGGTGGCGCCCGCGACAAGGAAAACAGCGGC
GGGGCGATTGCTACATCGTCGAGTCATGGCGGGAGAAATGTCACGACGGC
AGCCGCCGCAACTGTGGCGGACGAGGCGCTACTGCGAAAAGCGGAGAACT
TGGCGCAGGAGAACACGACGTTGCAGGCGACCATCGAGGGCCTGGAAAAG
GAGCGAGACTTTTACTTCGAGAAACTGACAGTAGTGGAGGAAATGCTGCA
GGAACGGCAAGCAGCAGCGGATGAGAATTTCTCGCAGGAGGCGTCTCTTC
TGATCGAAGAGATCTTTAAGGTCCTATATGCGACGGAAAACGCCACAGGC
CTTAGCGACTGCGATGAGCCGTGTTCGGAAGCAGCGGCGGCTGTCGAGGC
ACCGACAGCTGTAGTTTGAGTTTAAAAGGTGCTGCCGAGAAGCGGAGACC
ACAAGGCCTGCTGGCTCACACCACGCTGGTATTTAGGGAAGACATAAGCG
TGGAGGCATGACGTGAAATTAGTGACGTGGTCACGACTAGGTCGGCATTA
AAAAGGTGGGAGAGATTAAACATATATCGAACGAAGGACACCGAAGAATA
CGAGAAAAGGAAGATGGGGACGGGTTGAAATGAAGAATTTTTCTTTCGTG
CTGAGCGGAAAAGGCAAAGAAGCCATGAGTCTGAGTTCCAGCGCATTGTC
TGCCATTTGTAAGTGACTACTCCCATAATCCCCTATCAAAGCTTGAAGAA
AGCTCTTGATTTTA
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protein sequence of rna3516

>rna3516-protein ID=rna3516-protein|Name=rna3516|organism=Nannochloropsis gaditana|type=polypeptide|length=328bp
MSAIDWSYHVAHVTQHLPIGMMDAGYFVGRKEIVDWINETLQLNLTKVEQ
TASGAVACQLLDRIYPGKVPLNKVNWEAKLDYEFLSNYKLLQTAFTKLQI
DKHLPVEKLVRAKYQDNLEFMQWFKRFYELNNPALDYDPVVARAGGKGAG
GPARTIPPAAAPFCSSTRTGNMPSNSLKSRPSSRSIGSSTGSSSGNGGAR
DKENSGGAIATSSSHGGRNVTTAAAATVADEALLRKAENLAQENTTLQAT
IEGLEKERDFYFEKLTVVEEMLQERQAAADENFSQEASLLIEEIFKVLYA
TENATGLSDCDEPCSEAAAAVEAPTAVV
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mRNA from alignment at CM002461.1:591550..593490+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3516 ID=rna3516|Name=rna3516|organism=Nannochloropsis gaditana|type=mRNA|length=1941bp|location=Sequence derived from alignment at CM002461.1:591550..593490+ (Nannochloropsis gaditana)
CTTGCCTCCCGCATGCGAAGTGGAAGGCACAGCGCTTGCttgggggaggg
actggTGTGCGTTACATTGTGTGTGTGAATTCCGCGGAAGGGACAGCTCT
TACCAACGTGGTCAATCGTGTCTTCGGAGGCTTCCCCCAAAATTGACGTG
ACATCTCAACAACCATATGAAACAGAAACCTCGCCTTTGCCGTCTTTGCT
CCTCACCAGGCAAGCACTTTTCTATCTACCAACGATTCAAGCAAAGCAAA
AAGGGTTACAAGATGACAACGTCAATCGGTAGGCTTTGAAGTAGTCTTTG
GGACGTCCAAACTCCTGACAACATCTCGACTCCTAACGTGGCATTCCTAG
TGGCCTAGTGGTGCTCTTTCCGTTCGTATAATTGAATGCTTTCAGGCAAT
CGTGCGCGTTATTCAAGTAAAGACGTAATGTAGCTTGCCTGAATTTTCGA
AGCTACTATTCTTCGTCGCGTCTTGTATACACTTGTCCGGTAGCACCCCG
ACCCCAACTTATCACGGAATTGCTTGGCCCCACTCTGTGTTTCTCCAGGT
CCCCTATTTTCCGCTTTGCCTTGCCGCTTACCGCTCCTTTTCATTGCATC
GTAACACCAATGTCGGCGATCGATTGGTCGTACCATGTTGCTCATGTTAC
ACAACACCTTCCGATAGGCATGATGGACGCAGGTTACTTCGTGGGCCGCA
AGGAAATTGTTGACTGGATAAATGAAACATTGCAGCTGAATCTCACCAAA
GTTGAGCAGACAGCTTCAGGTGCTGTGGCCTGCCAGCTACTAGACCGCAT
CTATCCGGGAAAGGTGCCTTTGAATAAAGTTAATTGGGAAGCCAAGTTGG
ACTACGAGTTCCTTAGTAACTATAAGCTTCTCCAAACTGCATTCACCAAG
CTTCAAATTGACAAGCATTTGCCAGTTGAGAAATTGGTGCGTGCTAAATA
CCAGGATAATTTAGAATTTATGCAATGGTTCAAGCGGTTCTATGAGCTCA
ACAATCCCGCCCTCGACTACGACCCCGTGGTTGCCCGCGCCGGAGGCAAA
GGCGCCGGAGGACCTGCCCGCACCATACCTCCTGCGGCTGCTCCCTTCTG
CTCAAGCACGCGGACGGGAAATATGCCAAGCAATTCTCTTAAAAGCCGAC
CTTCATCTCGAAGCATTGGTAGCAGCACTGGCAGCTCCTCGGGCAATGGT
GGCGCCCGCGACAAGGAAAACAGCGGCGGGGCGATTGCTACATCGTCGAG
TCATGGCGGGAGAAATGTCACGACGGCAGCCGCCGCAACtgtggcggacg
aggcgcTACTGCGAAAAGCGGAGAACTTGGCGCAGGAGAACACGACGTTG
CAGGCGACCATCGAGGGCCTGGAAAAGGAGCGAGACTTTTACTTCGAGAA
ACTGACAGTAGTGGAGGAAATGCTGCAGGAACGGCAAGCAGCAGCGGATG
AGAATTTCTCGCAGGAGGCGTCTCTTCTGATCGAAGAGATCTTTAAGGTC
CTATATGCGACGGAAAACGCCACAGGCCTTAGCGACTGCGATGAGCCGTG
TTCggaagcagcggcggctGTCGAGGCACCGACAGCTGTAGTTTGAGTTT
AAAAGGTGCTGCCGAGAAGCGGAGACCACAAGGCCTGCTGGCTCACACCA
CGCTGGTATTTAGGGAAGACATAAGCGTGGAGGCATGACGTGAAATTAGT
GACGTGGTCACGACTAGGTCGGCATTAAAAAGGTGGGAGAGATTAAACAT
ATATCGAACGAAGGACACCGAAGAATacgagaaaaggaagatggggacGG
GTTGAAATGAAGAATTTTTCTTTCGTGCTGAGCggaaaaggcaaagaagC
CATGAGTCTGAGTTCCAGCGCATTGTCTGCCATTTGTAAGTGACTACTCC
CATAATCCCCTATCAAAGCTTGAAGAAAGCTCTTGATTTTA
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Coding sequence (CDS) from alignment at CM002461.1:591550..593490+

>rna3516 ID=rna3516|Name=rna3516|organism=Nannochloropsis gaditana|type=CDS|length=987bp|location=Sequence derived from alignment at CM002461.1:591550..593490+ (Nannochloropsis gaditana)
ATGTCGGCGATCGATTGGTCGTACCATGTTGCTCATGTTACACAACACCT
TCCGATAGGCATGATGGACGCAGGTTACTTCGTGGGCCGCAAGGAAATTG
TTGACTGGATAAATGAAACATTGCAGCTGAATCTCACCAAAGTTGAGCAG
ACAGCTTCAGGTGCTGTGGCCTGCCAGCTACTAGACCGCATCTATCCGGG
AAAGGTGCCTTTGAATAAAGTTAATTGGGAAGCCAAGTTGGACTACGAGT
TCCTTAGTAACTATAAGCTTCTCCAAACTGCATTCACCAAGCTTCAAATT
GACAAGCATTTGCCAGTTGAGAAATTGGTGCGTGCTAAATACCAGGATAA
TTTAGAATTTATGCAATGGTTCAAGCGGTTCTATGAGCTCAACAATCCCG
CCCTCGACTACGACCCCGTGGTTGCCCGCGCCGGAGGCAAAGGCGCCGGA
GGACCTGCCCGCACCATACCTCCTGCGGCTGCTCCCTTCTGCTCAAGCAC
GCGGACGGGAAATATGCCAAGCAATTCTCTTAAAAGCCGACCTTCATCTC
GAAGCATTGGTAGCAGCACTGGCAGCTCCTCGGGCAATGGTGGCGCCCGC
GACAAGGAAAACAGCGGCGGGGCGATTGCTACATCGTCGAGTCATGGCGG
GAGAAATGTCACGACGGCAGCCGCCGCAACtgtggcggacgaggcgcTAC
TGCGAAAAGCGGAGAACTTGGCGCAGGAGAACACGACGTTGCAGGCGACC
ATCGAGGGCCTGGAAAAGGAGCGAGACTTTTACTTCGAGAAACTGACAGT
AGTGGAGGAAATGCTGCAGGAACGGCAAGCAGCAGCGGATGAGAATTTCT
CGCAGGAGGCGTCTCTTCTGATCGAAGAGATCTTTAAGGTCCTATATGCG
ACGGAAAACGCCACAGGCCTTAGCGACTGCGATGAGCCGTGTTCggaagc
agcggcggctGTCGAGGCACCGACAGCTGTAGTTTGA
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Synonyms
Publications