rna3495, rna3495 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3495
Unique Name	rna3495
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2269
Alignment location	CM002461.1:542399..545383 +

Link to JBrowse

Properties


Property Name	Value
Product	methylenetetrahydrofolate reductase
Orig transcript id	gnl\|cribi\|Naga_100010g49.6146.mrna
Orig protein id	gnl\|cribi\|Naga_100010g49.6146
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:542399..545383 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100010g49	gene3366	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3495	rna3495-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27176.1	cds3486	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:542399..545383+
coding sequence from alignment at CM002461.1:542399..545383+

mRNA sequence

>rna3495 ID=rna3495|Name=rna3495|organism=Nannochloropsis gaditana|type=mRNA|length=2269bp
GGTGTGTGTGCTGGCTTGGGCAAGGAGGAAGACGAACCCGCTCCTTTCTT
GTAATTTCGTTAATGCTTTACGCCAGCTGGCCGGCCAATGCGAACTGGTA
TCCTGGCTGGAGTTGGTATTTCACTCGAAAGAGGGAAACAGACACTCTTC
CACTTCATAGGTCGCGTGACTTGACCTGTCACCTTGACAAGGAGTGCTTA
ATTAAATGCATGAACGCATCACAAACTGTATCCCCATGTTGATTTCGGTA
CTATCTAGGTTTTTCCCAGCAGCGAGCACAGGTTTAGCCGCTCCTATCAT
GGCTTTAATTCCCACCTGCAAGGTGGTCCACTGCCAGCTGCTTCTTTTGC
TGAGTACGATTCTCTTCTTGCCGCTAGCTGTTTCCTTTCAATCGACAGAC
ACCTTACAAAGCTCTCAGGCATCTTTTCCCGAAGATGGTGCTGTGGTGTC
CATTCGGATCCCTGAGCAAAAAGTCTTTGATGGCATTGAGTTCCCTCTCG
TCCTGGGACCCAATAAAAAGATGAATATCAGTGAAGGTACCTTGCAAGAG
AGGTTGACTAAGTGGGTGCTGGCGTCGACTCCTAAGTTGTTGGACGACTT
GTTGCTAAAACACGGAGCCATCCTCTTCAAGGGCTTTCACATTGATTCGC
CACATCATTTCAACGACATAGTCGAAACATTTGGGTTTGAAAATTTTCCT
TATGTGGGTGGGGCGGCCGTGCGGCGGCAACTCGCCCCAAGGGTTTTCAC
AACGAATGAGTCTCCGCCCACAGAGAAAATTCCTTTCCACCACGAGATGG
CGCAGGTGCCCGCTTTCCCGGATAAGGTTTTCTTTCAATGCGATATGCCC
TCTGAGACCGGGGGAGAAACTCCGGTGCTCCCATCTTGGGAAATTTGCAG
GCGCCTTGAAGCCCTTCACCCCGAATTTATTCGAAAGCTGGAGAAGGGTG
TGCGATATATCCGCGTCATGCCCGAGGAGGACGACCCTTCCTCCGCCATT
GGACGAGGTTGGAAGTCGACATATGCGACATCGGACCGTTCTAAAGTCAG
CAATATCCTGAAGTCACTAAATTATTCAGGAGAATGGTTGCCAGATGGCA
GTCTTCGCACTATCTCACCTGTCTTGCCAGCTGTGCGGCACGATCTGGGG
GAAAACCGATCCGGGCGCAAAACGTTCTTTAACTCGGTCGTGGCGGTTTT
CACGGGCTGGAATGATTCGCGCAACAAAGGGGAAACAGCCATAGAGTTTG
CAGACGGGAGCTACCTTGATCCCAGCCTCATAACGGTAGCTGGTAGGCTA
ATGGAGGAGCTTGCAGTGGCATTTCCATGGTGTCGGGGTGACTTCATATT
GATTGACAATCACACCGTGATGCATTCCCGGAGGCCATTTACAGGTAAAC
GCATTGTCACAGCCTCCCTTGCTAAAGCTTTGCGTGCTCCTCTTGATGAA
CTTAAAAAAGGTCCGAGAGAGGAGCTCTAAGTCAAGATTGGCCGTGATCT
GAAGAATGAAACGTGCGAATCCACGAGTGTGGGAGTCTTTTTGCCCTGGA
AGGCCTGTCACGCGTAATTTTTCTTTGAAATTCTTGTACTATATTTCCTG
GTATTCGCACGAAAGAAGACATCGCGTGCATGGCTTAGGACGTACGGGTG
CCACTGGAAGGAGACGATGACGACGCGTCGCTGATAACATCCATACCAAT
CAATAGGACGGCATACGGTACATTGCGACGAAACGCTGTTGAGATCAGGA
GAGGTGGTATGGTACACAAAGCTGCTGTGGCGGGATTTCCCCAATCACAT
TCACTTCGAGCCACCTTCGTTATGTATTTTATGCCCTGATAGGACGAATA
GAAGCTGTAAGAGAAGCGGGAGACCGCAGACAGGTGGACATAGCAAGGTT
AAATTTGTATAAGATGCCATATGTAACGATAGCGTTCCAATTATATGTTT
GGAGTTTCAGTCGAATGAAAGCGTTGTAGCTGGGTCAAGTCAGATATGTT
ACTATCACTTACATGGAAAAGATAGCCGCAGCACTGCCGACGTGTTCGGC
AGAAAATTTTACTTTAGCTTGAAAGTTGTTCAACACCACGCCAAAGGCTT
TACCCTTTTTAATACCCTGTACTGCATCTACTGTAGGGATAAGCGGACAT
TCAACTTTTAGCACGAGGGTGAGTCAGCTTTTCAACAAAGCAGGAAACAG
AAGGTCCCGATACAACAAGGCTTATCATCCTTACAAATAGTCCAGATAAC
TTTCGGCTTATAGAAACCA

protein sequence of rna3495

>rna3495-protein ID=rna3495-protein|Name=rna3495|organism=Nannochloropsis gaditana|type=polypeptide|length=807bp
MPSCTWPTSGWYFLLFITSNITLKYYAKQFESAFSLQALIQWVRNLSNCT
DEIGLCRTSKRISKRMGGRKIIDTIHSVLAEGGTTLSLEFFPAKTEEGMG
NLLARIEDMVARLQPTFVTLTWRSAFADESLWLKIGGIVQREFSVDVLLH
LTCHLPRADLVRVLQNARDAGIRNILALRGDPPIGEDRWQPVPGGFSNAV
ELVHLIRELHGDHFCIAVAGYPEVHTECWNSPDLPPSEQSFAQDLTFLKD
KVDAGADLVITQFFYDVPKYIRFHDKCREIGIPAHIPILPGYLPIQNYAS
FRKFTSWCKTSVPNPIDKALEKVKDDDEQVKALGVQEALRACRQLLDHGH
RTLHFYTLNLESTVTSVVEGLGLLPKANLRELSWQRHKASGNRVRAKGGP
AEEVRPIFWANRQTSYVSRTNDWDEFPNGRWGDSRSPAYGELSHYYLEFK
RPKVDRQKLWGIPTKHEDVYNVFVRFLDGKVGSLPWCEQAPAPETSAISS
NLKFLNANGYLTINSQPAVDGRPSTDPEVGWGGPGGIVYQKAYVEFFCSP
DKLKVLMEEMDRHPNLSYHAVNVKGQEYTNTRSARVNAVTWGVFPGREIV
QPTVVDSVSFGAWKDEAFELWLTQWATAYQEGSLPRMLIHEIHDTFYLVN
IVDENYGGDKTAVAETEDAVRLEHKSEGNDVTRLEKTVNRHLDIFSLFKC
VITRGFTSEQLFHFASETQRESEHLYAVVKELKAINHDTANENRMLRTSL
MQTQQEIADIKSELKRLRIQRGLDLIKPTTGFLHSGQHAAAGAITPLVAS
NTICKNA

mRNA from alignment at CM002461.1:542399..545383+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3495 ID=rna3495|Name=rna3495|organism=Nannochloropsis gaditana|type=mRNA|length=2985bp|location=Sequence derived from alignment at CM002461.1:542399..545383+ (Nannochloropsis gaditana)
CGGCCCGAGGCCGCCACGTTTGTGTCCATGCGAGCCGTACGCCTTCTCTT
TTCGGGGAACTCCGGAGACTATTGACAGGGAAGGTGCGCATGTGTATAGT
TTTCTCATTCGCCTTGAAACGGTCGCGCGTGCATTATGCCGTCATGTACC
TGGCCGACCTCCGGGTGGTACTTTCTCCTGTTCATCACATCAAACATAAC
GCTAAAATATTATGCTAAACAATTTGAATCTGCGTTTTCACTCCAAGCCC
TCATTCAGTGGGTGCGCAACCTCTCCAATTGCACTGACGAGATTGGTCTC
TGTAGGACTTCGAAAAGGATTTCAAAAAGGATGGGGGGACGCAAGATAAT
TGATACCATTCACTCTGTGCTGGCTGAAGGTGGCACGACTTTGTCGCTGG
AGTTCTTTCCGGCCaagacagaggaagggatgggcaACCTTTTGGCCCGC
ATTGAGGACATGGTTGCTCGCTTGCAGCCCACATTTGTGACGCTGACATG
GCGTTCAGCCTTTGCGGACGAGAGTCTGTGGCTGAAGATAGGTGGCATTG
TGCAACGCGAGTTCTCTGTCGACGTCCTATTACATTTGACCTGTCACTTG
CCACGAGCAGACCTGGTCCGTGTGCTTCAAAACGCTAGGGATGCTGGGAT
TCGCAACATTTTGGCTTTAAGAGGAGATCCTCCTATCGGGGAGGACCGAT
GGCAGCCTGTGCCTGGAGGCTTTTCGAACGCCGTTGAATTGGTTCATTTG
ATTCGGGAGCTGCATGGCGACCATTTCTGTATAGCTGTTGCTGGCTACCC
TGAGGTTCACACAGAATGCTGGAATTCCCCAGATTTACCTCCATCCGAGC
AGAGTTTTGCGCAAGACCTGACCTTTCTCAAGGACAAAGTCGATGCTGGA
GCAGACCTGGTTATCACCCAGTTTTTTTACGACGTCCCTAAGTACATAAG
ATTTCATGATAAGTGCCGGGAGATTGGTATCCCGGCGCACATCCCAATAT
TACCAGGCTACCTGCCGATTCAAAATTACGCTTCATTTCGCAAGTTTACA
TCCTGGTGCAAGACCTCTGTACCGAATCCCATTGACAAGGCACTGGAGAA
GGTTAAAGATGATGACGAGCAGGTCAAAGCTCTGGGAGTTCAAGAGGCCT
TGCGAGCTTGCCGGCAGCTTTTAGACCACGGCCATCGTACCCTCCATTTC
TACACCCTCAACTTGGAGTCCACTGTGACAAGTGTGGTCGAGGGCCTGGG
ACTTCTTCCTAAAGCCAACCTTCGCGAGCTCTCCTGGCAACGTCATAAAG
CGTCCGGAAACCGGGTTCGGGCTAAGGGTGGCCCCGCGGAAGAGGTACGT
CCCATATTCTGGGCAAATCGCCAGACAAGCTACGTGTCTCGCACCAATGA
TTGGGACGAGTTTCCGAACGGCCGATGGGGAGATTCTCGTTCACCCGCCT
ACGGTGAACTGTCGCACTATTATCTAGAATTCAAGAGGCCGAAGGTTGAC
CGACAAAAGCTATGGGGAATTCCCACGAAACACGAAGATGTGTACAATGT
ATTCGTTCGATTCTTGGACGGCAAAGTGGGAAGTCTACCCTGGTGTGAAC
AAGCTCCAGCGCCGGAAACGTCAGCCATCTCATCGAACCTCAAATTTTTG
AATGCAAATGGGTATTTGACCATCAATTCCCAGCCAGCAGTGGACGGGCG
CCCCTCAACAGATCCTGAAGTGGGATGGGGCGGCCCGGGAGGTATTGTCT
ATCAGAAGGCCTACGTGGAATTTTTCTGCAGCCCTGACAAGCTCAAAGTT
CTCatggaggaaatggacaGACATCCAAATTTGTCATATCATGCTGTGAA
TGTCAAGGGTCAAGAATATACTAACACGAGAAGTGCTCGTGTGAATGCGG
TTACCTGGGGCGTATTCCCTGGGCGCGAGATTGTGCAGCCGACAGTGGTT
GACTCTGTGTCCTTTGGGGCCTGGAAAGACGAGGCATTTGAACTCTGGCT
CACACAATGGGCCACAGCGTACCAAGAGGGCTCTTTGCCACGAATGCTGA
TCCACGAGATACACGACACATTTTATCTCGTTAACATTGTCGACGAGAAC
TACGGTGGGGATAAGACAGCAGTAGCCGAGACAGAAGATGCGGTTCGCCT
GGAGCACAAAAGCGAAGGAAATGACGTCACCCGTCTGGAAAAAACAGTAA
ATCGCCATCTGGAcatcttctctctttttaAATGTGTGATTACGCGGGGG
TTCACCTCTGAGCAGCTCTTCCATTTTGCGTCAGAAACACAACGGGAAAG
CGAGCATCTTTACGCTGTTGtgaaggagctgaaggcTATAAACCATGACA
CGGCGAATGAAAACCGGATGTTGCGTACTTCCCTCATGCAGACTCAACAA
GAAATTGCGGACATTAAATCCGAGTTAAAGCGTCTTCGAATCCAGCGCGG
ACTCGATCTCATAAAGCCCACTACTGGCTTTCTTCATTCAGGGCAGCATG
CGGCCGCCGGCGCTATAACTCCTCTAGTCGCTTCAAATACGATTTGCAAA
AACGCATGATCACACACAGGCAAACAAGGAGTACGAGGCGTTGCGATAGC
GGAGTTTCAAAAAGTCATGGACATGATACATGTAGTTTGGGAGTCTTCGT
CATAGCAATCCAATTTGCCAAGTGACATGGAACATCAGGCTACTTATGCC
AGTACTGTAATGGCACACGTCACACATTCTCCTCCGCAATTTTAGTAACG
TCACTCACGCACATATGGCTAGCTTCACAAAACCGTGAATGAagtgagag
gaaggaaattcGCGTACCGTCAAATGATTGCAAACGCTACTGATATCATC
GAAAAGAACTTTGACACGTGAAATAGAAACCCGATTCTCTGATCGTATAG
AGCATTTATTAGCACTTACAGACTTTTGCTATGTAGCCATCTGAAAATTT
CTCAACTTTTGATAATCAGAAATCTTACCGAGACA

Coding sequence (CDS) from alignment at CM002461.1:542399..545383+

>rna3495 ID=rna3495|Name=rna3495|organism=Nannochloropsis gaditana|type=CDS|length=2424bp|location=Sequence derived from alignment at CM002461.1:542399..545383+ (Nannochloropsis gaditana)
ATGCCGTCATGTACCTGGCCGACCTCCGGGTGGTACTTTCTCCTGTTCAT
CACATCAAACATAACGCTAAAATATTATGCTAAACAATTTGAATCTGCGT
TTTCACTCCAAGCCCTCATTCAGTGGGTGCGCAACCTCTCCAATTGCACT
GACGAGATTGGTCTCTGTAGGACTTCGAAAAGGATTTCAAAAAGGATGGG
GGGACGCAAGATAATTGATACCATTCACTCTGTGCTGGCTGAAGGTGGCA
CGACTTTGTCGCTGGAGTTCTTTCCGGCCaagacagaggaagggatgggc
aACCTTTTGGCCCGCATTGAGGACATGGTTGCTCGCTTGCAGCCCACATT
TGTGACGCTGACATGGCGTTCAGCCTTTGCGGACGAGAGTCTGTGGCTGA
AGATAGGTGGCATTGTGCAACGCGAGTTCTCTGTCGACGTCCTATTACAT
TTGACCTGTCACTTGCCACGAGCAGACCTGGTCCGTGTGCTTCAAAACGC
TAGGGATGCTGGGATTCGCAACATTTTGGCTTTAAGAGGAGATCCTCCTA
TCGGGGAGGACCGATGGCAGCCTGTGCCTGGAGGCTTTTCGAACGCCGTT
GAATTGGTTCATTTGATTCGGGAGCTGCATGGCGACCATTTCTGTATAGC
TGTTGCTGGCTACCCTGAGGTTCACACAGAATGCTGGAATTCCCCAGATT
TACCTCCATCCGAGCAGAGTTTTGCGCAAGACCTGACCTTTCTCAAGGAC
AAAGTCGATGCTGGAGCAGACCTGGTTATCACCCAGTTTTTTTACGACGT
CCCTAAGTACATAAGATTTCATGATAAGTGCCGGGAGATTGGTATCCCGG
CGCACATCCCAATATTACCAGGCTACCTGCCGATTCAAAATTACGCTTCA
TTTCGCAAGTTTACATCCTGGTGCAAGACCTCTGTACCGAATCCCATTGA
CAAGGCACTGGAGAAGGTTAAAGATGATGACGAGCAGGTCAAAGCTCTGG
GAGTTCAAGAGGCCTTGCGAGCTTGCCGGCAGCTTTTAGACCACGGCCAT
CGTACCCTCCATTTCTACACCCTCAACTTGGAGTCCACTGTGACAAGTGT
GGTCGAGGGCCTGGGACTTCTTCCTAAAGCCAACCTTCGCGAGCTCTCCT
GGCAACGTCATAAAGCGTCCGGAAACCGGGTTCGGGCTAAGGGTGGCCCC
GCGGAAGAGGTACGTCCCATATTCTGGGCAAATCGCCAGACAAGCTACGT
GTCTCGCACCAATGATTGGGACGAGTTTCCGAACGGCCGATGGGGAGATT
CTCGTTCACCCGCCTACGGTGAACTGTCGCACTATTATCTAGAATTCAAG
AGGCCGAAGGTTGACCGACAAAAGCTATGGGGAATTCCCACGAAACACGA
AGATGTGTACAATGTATTCGTTCGATTCTTGGACGGCAAAGTGGGAAGTC
TACCCTGGTGTGAACAAGCTCCAGCGCCGGAAACGTCAGCCATCTCATCG
AACCTCAAATTTTTGAATGCAAATGGGTATTTGACCATCAATTCCCAGCC
AGCAGTGGACGGGCGCCCCTCAACAGATCCTGAAGTGGGATGGGGCGGCC
CGGGAGGTATTGTCTATCAGAAGGCCTACGTGGAATTTTTCTGCAGCCCT
GACAAGCTCAAAGTTCTCatggaggaaatggacaGACATCCAAATTTGTC
ATATCATGCTGTGAATGTCAAGGGTCAAGAATATACTAACACGAGAAGTG
CTCGTGTGAATGCGGTTACCTGGGGCGTATTCCCTGGGCGCGAGATTGTG
CAGCCGACAGTGGTTGACTCTGTGTCCTTTGGGGCCTGGAAAGACGAGGC
ATTTGAACTCTGGCTCACACAATGGGCCACAGCGTACCAAGAGGGCTCTT
TGCCACGAATGCTGATCCACGAGATACACGACACATTTTATCTCGTTAAC
ATTGTCGACGAGAACTACGGTGGGGATAAGACAGCAGTAGCCGAGACAGA
AGATGCGGTTCGCCTGGAGCACAAAAGCGAAGGAAATGACGTCACCCGTC
TGGAAAAAACAGTAAATCGCCATCTGGAcatcttctctctttttaAATGT
GTGATTACGCGGGGGTTCACCTCTGAGCAGCTCTTCCATTTTGCGTCAGA
AACACAACGGGAAAGCGAGCATCTTTACGCTGTTGtgaaggagctgaagg
cTATAAACCATGACACGGCGAATGAAAACCGGATGTTGCGTACTTCCCTC
ATGCAGACTCAACAAGAAATTGCGGACATTAAATCCGAGTTAAAGCGTCT
TCGAATCCAGCGCGGACTCGATCTCATAAAGCCCACTACTGGCTTTCTTC
ATTCAGGGCAGCATGCGGCCGCCGGCGCTATAACTCCTCTAGTCGCTTCA
AATACGATTTGCAAAAACGCATGA

Synonyms

Publications