EWM27180.1, cds3462 (CDS) Nannochloropsis gaditana

Overview
NameEWM27180.1
Unique Namecds3462
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:492723..493526 +
Alignment locationCM002461.1:493626..494018 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27180.1
Producturacil-dna glycosylase superfamily
Orig transcript idgnl|cribi|Naga_100010g24.6150.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:492723..493526 +
CM002461.1supercontigCM002461.1:493626..494018 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0016799hydrolase activity, hydrolyzing N-glycosyl compounds
Vocabulary: Biological Process
TermDefinition
GO:0006950response to stress
GO:0006259DNA metabolic process
GO:0006281DNA repair
Vocabulary: INTERPRO
TermDefinition
IPR015637DNA_glycosylase_G/T-mismatch
IPR005122Uracil-DNA_glycosylase-like
Homology
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|585109360|gb|EWM27180.1| (uracil-dna glycosylase superfamily [Nannochloropsis gaditana])

HSP 1 Score: 832.017 bits (2148), Expect = 0.000e+0
Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 0
Query:    1 MRSVLQLHVHGRRWNSKRICKPRQNGRNDSVIHDARKSAEERCDRNRGDQLKKAKADHAGHCIKKLTGLCFGTVTSRPCQTTTEDKLPSGLCAAQRAATCLVTFHEVQPLQTRTGTPSMHFDRRSCILYCFCASLFFFTAVSADLWEVNYAFIMVGVARRKSQALTTTALAFRERRGLATISLHKSKTPAHENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPPVS 398
            MRSVLQLHVHGRRWNSKRICKPRQNGRNDSVIHDARKSAEERCDRNRGDQLKKAKADHAGHCIKKLTGLCFGTVTSRPCQTTTEDKLPSGLCAAQRAATCLVTFHEVQPLQTRTGTPSMHFDRRSCILYCFCASLFFFTAVSADLWEVNYAFIMVGVARRKSQALTTTALAFRERRGLATISLHKSKTPAHENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPPVS
Sbjct:    1 MRSVLQLHVHGRRWNSKRICKPRQNGRNDSVIHDARKSAEERCDRNRGDQLKKAKADHAGHCIKKLTGLCFGTVTSRPCQTTTEDKLPSGLCAAQRAATCLVTFHEVQPLQTRTGTPSMHFDRRSCILYCFCASLFFFTAVSADLWEVNYAFIMVGVARRKSQALTTTALAFRERRGLATISLHKSKTPAHENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPPVS 398          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|298708386|emb|CBJ48449.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 197.978 bits (502), Expect = 1.975e-56
Identity = 110/245 (44.90%), Postives = 138/245 (56.33%), Query Frame = 0
Query:  196 GLREKY---GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSH----------------------------ARRAGAP-----------------PKIVAFTGKRQFRELFFD--------SKAYKSISISYGLQSA--RPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELL 382
            GL EKY   G+PE PLRL++VGHNPS  AW  GHYY NPSNRMW LL +  IIP G+TA +D+ CP T G+GFTD+G+  PGT SS F    LH+WRR  Y RL +H                            A   GA                  P+I+AF GKRQ+ ELFFD        +K  K+    +GLQ A  RP G+PF A+ T++FV+ SSSGAAAM+N ARE PY++L + +
Sbjct:   66 GLVEKYRSPGEPEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHM 310          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|159490884|ref|XP_001703403.1| (hypothetical protein CHLREDRAFT_143778 [Chlamydomonas reinhardtii] >gi|158280327|gb|EDP06085.1| predicted protein [Chlamydomonas reinhardtii])

HSP 1 Score: 187.963 bits (476), Expect = 1.183e-52
Identity = 102/217 (47.00%), Postives = 130/217 (59.91%), Query Frame = 0
Query:  189 PAHENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYT--AKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAG----------APPKIVAFTGKRQFRELFFDSKA---YKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVP 390
            P+ ++  G+ EK GD   PLRLV+VGHNPS  AWR GHYYSNPSN +W LLR   I P       +DD   P+  G+GF D+G G PGTDSS FK+ V   W R  Y RL +H RRA             P++VAFTGKRQ+ EL          K  ++ +G Q+A P G+P     T+++V TS+SGAA M+  ARE PY +LAE L Q+PW +P
Sbjct:  111 PSLDSAPGVPEKLGD--DPLRLVIVGHNPSEHAWRSGHYYSNPSNHLWPLLRRTGIAPPDRIRGPQDDGLMPAVAGVGFLDVGCGVPGTDSSRFKSEVFEGWSRGFYSRLRAHMRRAATSIGCRCGLCGAPRLVAFTGKRQYLELMNVGAGPARNKVKTVEFGRQAALPPGWPL-PPSTEVWVCTSTSGAAPMTREAREQPYVQLAERLAQLPWPLP 324          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|1004148845|gb|KXZ56817.1| (hypothetical protein GPECTOR_1g736 [Gonium pectorale])

HSP 1 Score: 182.185 bits (461), Expect = 4.003e-51
Identity = 102/214 (47.66%), Postives = 135/214 (63.08%), Query Frame = 0
Query:  196 GLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGY-TAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGA----------PPKIVAFTGKRQFRELFFDSKAY--KSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPP 396
            G+ EK GD   PLRLV+VGHNPS  AW+ GHYYSNPSN MW +L +  I P G   A+DDDR P   G+GF D+G G+PGTDSS+F + V  AW R+ Y RL +H  RA A           P++VAF+GKRQF EL    ++   ++ ++ +G QS  P G+PF    T+++V +S+SGAAAM+   RE PY+ LAE L +  W   P + PP
Sbjct:   40 GVPEKLGDA--PLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASIGCTCGLCGAPRLVAFSGKRQFLELLNVGRSGRDRAKTVEFGPQSELPRGWPF-PRSTEVWVCSSTSGAAAMTKEQREGPYKRLAERLAREEW---PRRGPP 247          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|302830280|ref|XP_002946706.1| (hypothetical protein VOLCADRAFT_116135 [Volvox carteri f. nagariensis] >gi|300267750|gb|EFJ51932.1| hypothetical protein VOLCADRAFT_116135 [Volvox carteri f. nagariensis])

HSP 1 Score: 182.956 bits (463), Expect = 4.739e-51
Identity = 99/205 (48.29%), Postives = 128/205 (62.44%), Query Frame = 0
Query:  196 GLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGY-TAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGA----------PPKIVAFTGKRQFRELFFDSKAYKS--ISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387
            G+ EK GD  +PLRL++VGHNPSA AW+ GHYYSNPSN MW LL    I P     A+DDDR P   G+GF D+G G+PGTDSS+FK+ V  +W R+ Y RL  H  RA A           P  VAF+GKRQF EL    +A +    ++ +G Q   P  +PF    T ++V +S+SGAAA++   RE PY++LAE LK +PW
Sbjct:   72 GVPEKLGD--QPLRLIIVGHNPSAHAWQSGHYYSNPSNHMWRLLVATGIAPSWVRGAQDDDRLPGAVGVGFLDVGCGHPGTDSSSFKSEVFLSWSRAFYTRLRDHMARAAASIGCTCGCCGAPCFVAFSGKRQFLELLNVDRAPRDRVKTVEHGPQVLLPREWPFPRTRTAVWVCSSTSGAAALTRQQREEPYRQLAEKLKGVPW 274          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|545365234|ref|XP_005647609.1| (hypothetical protein COCSUDRAFT_15676, partial [Coccomyxa subellipsoidea C-169] >gi|384249584|gb|EIE23065.1| hypothetical protein COCSUDRAFT_15676, partial [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 157.918 bits (398), Expect = 1.396e-42
Identity = 88/209 (42.11%), Postives = 122/209 (58.37%), Query Frame = 0
Query:  192 ENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYT-AKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAG----------APPKIVAFTGKRQFRELFFDSKAY--KSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387
            EN  GL E+ GD   PLRL++ G+NPS  AW  GHYYS+P+N MW +LR   I P     A+DD+R  +  G+GF D+G G+PGT  S F +    +W  + Y RL  H  RA             P +V F GKRQ+ EL    +    K   + +GLQ  RP+G+PF A  T+++VL S+SGAA M+ A R  P+QEL++ ++Q+ W
Sbjct:    2 ENAKGLPERLGD--MPLRLIVGGNNPSDHAWSTGHYYSHPANWMWRILRKTGIAPAWVKGAQDDERMVTEAGVGFLDVGCGHPGTLLSEFSSQTFQSWAPAFYTRLKMHMDRASKNSGCVCGKCGAPAVVGFAGKRQWMELLNVGRKGRDKYTKLDHGLQHMRPEGWPFPAS-TEVWVLPSTSGAAPMATADRMGPWQELSDRVEQMEW 207          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|301112152|ref|XP_002905155.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095485|gb|EEY53537.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 157.918 bits (398), Expect = 2.483e-42
Identity = 90/194 (46.39%), Postives = 117/194 (60.31%), Query Frame = 0
Query:  204 PERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNV-------KIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNA-DETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEV 389
            PER LRL++VGHNPS  AW+ G+ YSNP+NRMW LL           I+P      + +  P   G+GFT +G   PG D+S +    + AWR S +QRL  HA      P ++AF+GKRQF  LF  S A   I  SYG QS  P G+P     +++++VL SSSG AAM+ A R +PYQ+LAE L+QIPW V
Sbjct:   49 PERRLRLLIVGHNPSDHAWKTGYSYSNPTNRMWMLLTGTLSPHSWEGIVPSTARIDEQNILPDVHGVGFTSIGL-EPGNDASKYGKATMEAWRTSFFQRLRRHALPHA--PILIAFSGKRQFSYLF--SPALSKIE-SYGKQSKLPPGWPHELRADSEVWVLPSSSGRAAMTTAQRTLPYQQLAERLRQIPWGV 236          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|552827913|ref|XP_005847338.1| (hypothetical protein CHLNCDRAFT_134530 [Chlorella variabilis] >gi|307106992|gb|EFN55236.1| hypothetical protein CHLNCDRAFT_134530 [Chlorella variabilis])

HSP 1 Score: 158.303 bits (399), Expect = 2.436e-41
Identity = 97/251 (38.65%), Postives = 125/251 (49.80%), Query Frame = 0
Query:  199 EKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYT--AKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGA----------PPKIVAFTGKRQFRELFFDS--------------------------------------------------KAYKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387
            EK GD   PLRLV+VGHNPS  AW   H+YSNP+N  W +LR+  I P      A DD + P+  G+GFTD+G G PGTDSS F A    AWR + YQR+ + ARRA A           P IVAF+GKRQF+ELF  +                                                  +A +   +  G Q   P+G+P   D T+++V+TS+SGAA M+   R  P+Q LAE L+Q PW
Sbjct:   75 EKMGD--APLRLVIVGHNPSEHAWASSHFYSNPTNWFWRILRDTGIAPPAAISGAADDGKMPAVAGVGFTDVGSGAPGTDSSQFTAQDFEAWRPAFYQRMATQARRASAAIGCTCGACGAPCIVAFSGKRQFQELFAGAAGGGRGRSKGAAVAQAAPAAAGAAGPPLGEGAVAAAAAPQQQQQQRAPTLQARRPRRVDTGRQWVLPEGWPLPLD-TEVWVMTSTSGAAPMTRQQRLAPWQALAERLRQEPW 322          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|1214684047|gb|OWZ01664.1| (hypothetical protein PHMEG_00026906 [Phytophthora megakarya])

HSP 1 Score: 142.895 bits (359), Expect = 7.067e-36
Identity = 87/212 (41.04%), Postives = 116/212 (54.72%), Query Frame = 0
Query:  205 ERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNV-------KIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRA--------------------GAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFP--FNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387
            ER LRL++VGHNPS  AW+ G+ YSNP+NRMW LL           ++P      + +  P   G+GFT +G   PG D+S +    + AWR S ++RL  HA +                     G  P +VAF+GKRQF  LF  S     I  +YG Q+  P G+P    AD ++++VL SSSG AAM+ A R +PYQ+LAE L QIPW
Sbjct:   88 ERRLRLLIVGHNPSDHAWKTGYSYSNPTNRMWMLLTGTLAPHSWEGVVPSTARIVEQNIMPHIYGVGFTSIGL-EPGNDASKYGKTTMEAWRDSFFKRLRRHAAQVCLNDHSDIKHEESDVKKCELGHAPILVAFSGKRQFSWLF--SPPLSKIE-NYGRQTKLPPGWPHELRAD-SEVWVLPSSSGRAAMTTAQRTLPYQQLAERLHQIPW 294          
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|568008605|gb|ETL82822.1| (hypothetical protein L917_17089 [Phytophthora parasitica] >gi|570316620|gb|ETO64568.1| hypothetical protein F444_17877 [Phytophthora parasitica P1976])

HSP 1 Score: 142.124 bits (357), Expect = 1.097e-35
Identity = 87/218 (39.91%), Postives = 118/218 (54.13%), Query Frame = 0
Query:  204 PERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNV-------KIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRA-------------------------GAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFP--FNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387
            PER LRL++VGHNPS  AW+ G+ YSNP+NRMW LL           ++P   +  + +  P+  G+GFT +G   PG D+S +    + AWR S +QRL  HA +                             P ++AF+GKRQF  LF  S     I  +YG Q+  P G+P    AD ++++VL SSSG AAM+ A R +PYQ+LAE L QIPW
Sbjct:   87 PERRLRLLIVGHNPSDHAWKTGYSYSNPTNRMWMLLTGTLSPHSWEGVVPSTASIMEQNILPTVHGVGFTSIGL-VPGNDASKYGKATMEAWRDSFFQRLRRHAAQVCLNDHDAIVKQEDEGEEAQQTECTLPHAPILIAFSGKRQFSWLF--SPPLSKIE-NYGKQTRFPPGWPRELRAD-SEVWVLPSSSGRAAMTTAQRTLPYQQLAERLHQIPW 299          
The following BLAST results are available for this feature:
BLAST of EWM27180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109360|gb|EWM27180.1|0.000e+0100.00uracil-dna glycosylase superfamily [Nannochloropsi... [more]
gi|298708386|emb|CBJ48449.1|1.975e-5644.90conserved unknown protein [Ectocarpus siliculosus][more]
gi|159490884|ref|XP_001703403.1|1.183e-5247.00hypothetical protein CHLREDRAFT_143778 [Chlamydomo... [more]
gi|1004148845|gb|KXZ56817.1|4.003e-5147.66hypothetical protein GPECTOR_1g736 [Gonium pectora... [more]
gi|302830280|ref|XP_002946706.1|4.739e-5148.29hypothetical protein VOLCADRAFT_116135 [Volvox car... [more]
gi|545365234|ref|XP_005647609.1|1.396e-4242.11hypothetical protein COCSUDRAFT_15676, partial [Co... [more]
gi|301112152|ref|XP_002905155.1|2.483e-4246.39conserved hypothetical protein [Phytophthora infes... [more]
gi|552827913|ref|XP_005847338.1|2.436e-4138.65hypothetical protein CHLNCDRAFT_134530 [Chlorella ... [more]
gi|1214684047|gb|OWZ01664.1|7.067e-3641.04hypothetical protein PHMEG_00026906 [Phytophthora ... [more]
gi|568008605|gb|ETL82822.1|1.097e-3539.91hypothetical protein L917_17089 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3471rna3471Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications