rna3471, rna3471 (mRNA) Nannochloropsis gaditana

Overview
Namerna3471
Unique Namerna3471
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length633
Alignment locationCM002461.1:492723..494018 +

Link to JBrowse

Properties
Property NameValue
Producturacil-dna glycosylase superfamily
Orig transcript idgnl|cribi|Naga_100010g24.6150.mrna
Orig protein idgnl|cribi|Naga_100010g24.6150
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:492723..494018 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g24gene3345Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3471rna3471-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27180.1cds3462Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3471 ID=rna3471|Name=rna3471|organism=Nannochloropsis gaditana|type=mRNA|length=633bp
ATGGCAAATAGAGGAAAGCAAGGTGCTCAGTCGAAATATGACCATCTGAT
CAAGCTTCTCTTGATTGGAGATAGTGGTGTTGGTAAGAGTTGTCTATTGC
TTCGGTATTCGGAAGACTCATTCACCCCTTCTTTCATAACCACTATCGGC
ATCGATTTCAAAATTAAATCTTTGCCATTGGAGGACAAGAAGCTCAAGTT
ACAAATCTGGGACACTGCCGGTCAGGAGCGTTTCCGCACCATCACAACCG
CGTACTATCGTGGCGCGATGGGCATTCTTTTGGTATATGACGTAACAGAC
GAGCGCTCTTTTGCAAATGTAAAAAATTGGATGAGACAAATCGAGCAGCA
CGCTTCCGAAAGCGTCAATAAAATTTTGATTGGTAACAAGTGTGATGTGG
ACCCTGCTGATCGGCGCGTCTCATTAGAACAAGGAAGAAAACTGGCAGAG
GAGTATCGAATTAAATTTTTCGAAACATCAGCCAAAGAAAATGTGAATGT
GGACGAGGCCTTCTATACTGTGGCTAGGGATATTGCACTGAGGATTGATA
ATGAAGTTGATTTGACCGCCAGCGGCAAGAACGTCAAGATCGGGCCTGGA
GTTGGTCCCGCAGGGGGCAAGGAGTGTTGCTAA
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protein sequence of rna3471

>rna3471-protein ID=rna3471-protein|Name=rna3471|organism=Nannochloropsis gaditana|type=polypeptide|length=398bp
MRSVLQLHVHGRRWNSKRICKPRQNGRNDSVIHDARKSAEERCDRNRGDQ
LKKAKADHAGHCIKKLTGLCFGTVTSRPCQTTTEDKLPSGLCAAQRAATC
LVTFHEVQPLQTRTGTPSMHFDRRSCILYCFCASLFFFTAVSADLWEVNY
AFIMVGVARRKSQALTTTALAFRERRGLATISLHKSKTPAHENCGGLREK
YGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYT
AKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHA
RRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNAD
ETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPPVS
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mRNA from alignment at CM002461.1:492723..494018+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3471 ID=rna3471|Name=rna3471|organism=Nannochloropsis gaditana|type=mRNA|length=1296bp|location=Sequence derived from alignment at CM002461.1:492723..494018+ (Nannochloropsis gaditana)
ATGCGGTCTGTTTTACAATTACATGTACATGGTAGGAGGTGGAACAGCAA
GCGAATTTGTAAACCCCGTCAAAATGGTCGAAACGATTCTGTAATCCATG
ATGCTCGAAAGTCTGCAGAAGAAAGATGTGACAGAAACCGAGGAGATCAA
TTGAAAAAAGCCAAAGCGGATCACGCAGGTCATTGTATAAAAAAACTCAC
TGGGTTGTGTTTTGGAACGGTAACCTCCCGGCCATGTCAGACGACAACCG
AGGACAAGCTACCAAGCGGCCTTTGCGCGGCCCAACGAGCCGCTACCTGC
CTCGTGACTTTCCATGAAGTACAACCCCTTCAGACACGAACAGGCACGCC
TTCTATGCATTTTGACCGCCGCAGCTGCATTTTATATTGCTTttgcgcct
ccctctttttcttcactGCTGTCTCCGCTGATTTGTGGGAAGTCAACTAC
GCTTTCATAATGGTTGGTGTAGCACGACGGAAGTCGCAAGCATTGACGAC
CACGGCGCTCGCATTTCGAGAGAGACGCGGCCTTGCTACTATATCTTTGC
ACAAATCGAAAACGCCTGCGCACGAGAATTGCGGTGGACTTCGTGAGAAA
TACGGCGATCCTGAACGGCCATTgcgccttgtcctcgtcggCCACAACCC
CTCAGCAGCCGCGTGGCGTGACGGGCACTATTACTCCAATCCATCCAACA
GAATGTGGTCATTGCTGAGAAATGTGAAAATCATTCCTGAGGGCTACACT
GCCAAAGATGATGACCGCTGCCCCTCGACGTGCGGGATCGGATTCACGGA
CCTGGTGAGTGATCAGTGGTGTTACGTTGCGGAACTACTCCATATAATTC
TATGCCTCGTGATGTTACCGTAATTTTGCCTGCCTCGTCATCTTTTGCTC
CAGGGCTACGGGAACCCGGGCACAGATTCTTCAAATTTTAAAGCTCCTGT
TTTGCACGCATGGCGTCGAAGTCTGTATCAGCGGTTGCTATCGCACGCGA
GACGGGCGGGAGCACCCCCAAAGATTGTGGCATTCACAGGCAAACGTCAG
TTCAGAGAACTTTTTTTCGATTCCAAAGCGTACAAATCAATATCTATTTC
CTACGGCCTCCAGAGCGCCCGGCCCGACGGCTTCCCTTTCAATGCGGATG
AGACAAAGCTATTCGTCCTCACGTCATCGAGCGGGGCGGCCGCCATGAGC
AACGCTGCCCGTGAAATGCCGTATCAGGAGCTAGCCGAACTACTTAAGCA
GATTCCTTGGGAAGTACCGCCATTAAAACCGCCTCCAGTGAGCTAG
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Coding sequence (CDS) from alignment at CM002461.1:492723..494018+

>rna3471 ID=rna3471|Name=rna3471|organism=Nannochloropsis gaditana|type=CDS|length=2394bp|location=Sequence derived from alignment at CM002461.1:492723..494018+ (Nannochloropsis gaditana)
ATGCGGTCTGTTTTACAATTACATGTACATGGTAGGAGGTGGAACAGCAA
GCGAATTTGTAAACCCCGTCAAAATGGTCGAAACGATTCTGTAATCCATG
ATGCTCGAAAGTCTGCAGAAGAAAGATGTGACAGAAACCGAGGAGATCAA
TTGAAAAAAGCCAAAGCGGATCACGCAGGTCATTGTATAAAAAAACTCAC
TGGGTTGTGTTTTGGAACGGTAACCTCCCGGCCATGTCAGACGACAACCG
AGGACAAGCTACCAAGCGGCCTTTGCGCGGCCCAACGAGCCGCTACCTGC
CTCGTGACTTTCCATGAAGTACAACCCCTTCAGACACGAACAGGCACGCC
TTCTATGCATTTTGACCGCCGCAGCTGCATTTTATATTGCTTttgcgcct
ccctctttttcttcactGCTGTCTCCGCTGATTTGTGGGAAGTCAACTAC
GCTTTCATAATGGTTGGTGTAGCACGACGGAAGTCGCAAGCATTGACGAC
CACGGCGCTCGCATTTCGAGAGAGACGCGGCCTTGCTACTATATCTTTGC
ACAAATCGAAAACGCCTGCGCACGAGAATTGCGGTGGACTTCGTGAGAAA
TACGGCGATCCTGAACGGCCATTgcgccttgtcctcgtcggCCACAACCC
CTCAGCAGCCGCGTGGCGTGACGGGCACTATTACTCCAATCCATCCAACA
GAATGTGGTCATTGCTGAGAAATGTGAAAATCATTCCTGAGGGCTACACT
GCCAAAGATGATGACCGCTGCCCCTCGACGTGCGGGATCGGATTCACGGA
CCTGGGCTACGGGAACCCGGGCACAGATTCTTCAAATTTTAAAGCTCCTG
TTTTGCACGCATGGCGTCGAAGTCTGTATCAGCGGTTGCTATCGCACGCG
AGACGGGCGGGAGCACCCCCAAAGATTGTGGCATTCACAGGCAAACGTCA
GTTCAGAGAACTTTTTTTCGATTCCAAAGCGTACAAATCAATATCTATTT
CCTACGGCCTCCAGAGCGCCCGGCCCGACGGCTTCCCTTTCAATGCGGAT
GAGACAAAGCTATTCGTCCTCACGTCATCGAGCGGGGCGGCCGCCATGAG
CAACGCTGCCCGTGAAATGCCGTATCAGGAGCTAGCCGAACTACTTAAGC
AGATTCCTTGGGAAGTACCGCCATTAAAACCGCCTCCAGTGAGCTAGATG
CGGTCTGTTTTACAATTACATGTACATGGTAGGAGGTGGAACAGCAAGCG
AATTTGTAAACCCCGTCAAAATGGTCGAAACGATTCTGTAATCCATGATG
CTCGAAAGTCTGCAGAAGAAAGATGTGACAGAAACCGAGGAGATCAATTG
AAAAAAGCCAAAGCGGATCACGCAGGTCATTGTATAAAAAAACTCACTGG
GTTGTGTTTTGGAACGGTAACCTCCCGGCCATGTCAGACGACAACCGAGG
ACAAGCTACCAAGCGGCCTTTGCGCGGCCCAACGAGCCGCTACCTGCCTC
GTGACTTTCCATGAAGTACAACCCCTTCAGACACGAACAGGCACGCCTTC
TATGCATTTTGACCGCCGCAGCTGCATTTTATATTGCTTttgcgcctccc
tctttttcttcactGCTGTCTCCGCTGATTTGTGGGAAGTCAACTACGCT
TTCATAATGGTTGGTGTAGCACGACGGAAGTCGCAAGCATTGACGACCAC
GGCGCTCGCATTTCGAGAGAGACGCGGCCTTGCTACTATATCTTTGCACA
AATCGAAAACGCCTGCGCACGAGAATTGCGGTGGACTTCGTGAGAAATAC
GGCGATCCTGAACGGCCATTgcgccttgtcctcgtcggCCACAACCCCTC
AGCAGCCGCGTGGCGTGACGGGCACTATTACTCCAATCCATCCAACAGAA
TGTGGTCATTGCTGAGAAATGTGAAAATCATTCCTGAGGGCTACACTGCC
AAAGATGATGACCGCTGCCCCTCGACGTGCGGGATCGGATTCACGGACCT
GGGCTACGGGAACCCGGGCACAGATTCTTCAAATTTTAAAGCTCCTGTTT
TGCACGCATGGCGTCGAAGTCTGTATCAGCGGTTGCTATCGCACGCGAGA
CGGGCGGGAGCACCCCCAAAGATTGTGGCATTCACAGGCAAACGTCAGTT
CAGAGAACTTTTTTTCGATTCCAAAGCGTACAAATCAATATCTATTTCCT
ACGGCCTCCAGAGCGCCCGGCCCGACGGCTTCCCTTTCAATGCGGATGAG
ACAAAGCTATTCGTCCTCACGTCATCGAGCGGGGCGGCCGCCATGAGCAA
CGCTGCCCGTGAAATGCCGTATCAGGAGCTAGCCGAACTACTTAAGCAGA
TTCCTTGGGAAGTACCGCCATTAAAACCGCCTCCAGTGAGCTAG
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Synonyms
Publications