EWM27180.1, cds3462 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|585109360|gb|EWM27180.1| (uracil-dna glycosylase superfamily [Nannochloropsis gaditana]) HSP 1 Score: 832.017 bits (2148), Expect = 0.000e+0 Identity = 398/398 (100.00%), Postives = 398/398 (100.00%), Query Frame = 0 Query: 1 MRSVLQLHVHGRRWNSKRICKPRQNGRNDSVIHDARKSAEERCDRNRGDQLKKAKADHAGHCIKKLTGLCFGTVTSRPCQTTTEDKLPSGLCAAQRAATCLVTFHEVQPLQTRTGTPSMHFDRRSCILYCFCASLFFFTAVSADLWEVNYAFIMVGVARRKSQALTTTALAFRERRGLATISLHKSKTPAHENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPPVS 398 MRSVLQLHVHGRRWNSKRICKPRQNGRNDSVIHDARKSAEERCDRNRGDQLKKAKADHAGHCIKKLTGLCFGTVTSRPCQTTTEDKLPSGLCAAQRAATCLVTFHEVQPLQTRTGTPSMHFDRRSCILYCFCASLFFFTAVSADLWEVNYAFIMVGVARRKSQALTTTALAFRERRGLATISLHKSKTPAHENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPPVS Sbjct: 1 MRSVLQLHVHGRRWNSKRICKPRQNGRNDSVIHDARKSAEERCDRNRGDQLKKAKADHAGHCIKKLTGLCFGTVTSRPCQTTTEDKLPSGLCAAQRAATCLVTFHEVQPLQTRTGTPSMHFDRRSCILYCFCASLFFFTAVSADLWEVNYAFIMVGVARRKSQALTTTALAFRERRGLATISLHKSKTPAHENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPPVS 398
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|298708386|emb|CBJ48449.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 197.978 bits (502), Expect = 1.975e-56 Identity = 110/245 (44.90%), Postives = 138/245 (56.33%), Query Frame = 0 Query: 196 GLREKY---GDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSH----------------------------ARRAGAP-----------------PKIVAFTGKRQFRELFFD--------SKAYKSISISYGLQSA--RPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELL 382 GL EKY G+PE PLRL++VGHNPS AW GHYY NPSNRMW LL + IIP G+TA +D+ CP T G+GFTD+G+ PGT SS F LH+WRR Y RL +H A GA P+I+AF GKRQ+ ELFFD +K K+ +GLQ A RP G+PF A+ T++FV+ SSSGAAAM+N ARE PY++L + + Sbjct: 66 GLVEKYRSPGEPEWPLRLIIVGHNPSEKAWELGHYYGNPSNRMWKLLSSAGIIPPGFTASNDEDCPITSGVGFTDVGFSIPGTVSSEFGKKELHSWRRGFYDRLTAHAERAAATVAASKSYPAEPATERGTDSTSAAGKGADQGVATAATIKAKIEDGCPRIIAFAGKRQWEELFFDASAKDKAKTKGGKTGPFRFGLQPADLRPPGWPFPAERTEMFVVPSSSGAAAMTNEARETPYRDLGQHM 310
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|159490884|ref|XP_001703403.1| (hypothetical protein CHLREDRAFT_143778 [Chlamydomonas reinhardtii] >gi|158280327|gb|EDP06085.1| predicted protein [Chlamydomonas reinhardtii]) HSP 1 Score: 187.963 bits (476), Expect = 1.183e-52 Identity = 102/217 (47.00%), Postives = 130/217 (59.91%), Query Frame = 0 Query: 189 PAHENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYT--AKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAG----------APPKIVAFTGKRQFRELFFDSKA---YKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVP 390 P+ ++ G+ EK GD PLRLV+VGHNPS AWR GHYYSNPSN +W LLR I P +DD P+ G+GF D+G G PGTDSS FK+ V W R Y RL +H RRA P++VAFTGKRQ+ EL K ++ +G Q+A P G+P T+++V TS+SGAA M+ ARE PY +LAE L Q+PW +P Sbjct: 111 PSLDSAPGVPEKLGD--DPLRLVIVGHNPSEHAWRSGHYYSNPSNHLWPLLRRTGIAPPDRIRGPQDDGLMPAVAGVGFLDVGCGVPGTDSSRFKSEVFEGWSRGFYSRLRAHMRRAATSIGCRCGLCGAPRLVAFTGKRQYLELMNVGAGPARNKVKTVEFGRQAALPPGWPL-PPSTEVWVCTSTSGAAPMTREAREQPYVQLAERLAQLPWPLP 324
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|1004148845|gb|KXZ56817.1| (hypothetical protein GPECTOR_1g736 [Gonium pectorale]) HSP 1 Score: 182.185 bits (461), Expect = 4.003e-51 Identity = 102/214 (47.66%), Postives = 135/214 (63.08%), Query Frame = 0 Query: 196 GLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGY-TAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGA----------PPKIVAFTGKRQFRELFFDSKAY--KSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEVPPLKPPP 396 G+ EK GD PLRLV+VGHNPS AW+ GHYYSNPSN MW +L + I P G A+DDDR P G+GF D+G G+PGTDSS+F + V AW R+ Y RL +H RA A P++VAF+GKRQF EL ++ ++ ++ +G QS P G+PF T+++V +S+SGAAAM+ RE PY+ LAE L + W P + PP Sbjct: 40 GVPEKLGDA--PLRLVIVGHNPSEHAWQSGHYYSNPSNLMWRILISTGIAPPGTRGAEDDDRLPREAGVGFLDVGCGHPGTDSSSFASEVFDAWSRAFYSRLKAHMARAAASIGCTCGLCGAPRLVAFSGKRQFLELLNVGRSGRDRAKTVEFGPQSELPRGWPF-PRSTEVWVCSSTSGAAAMTKEQREGPYKRLAERLAREEW---PRRGPP 247
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|302830280|ref|XP_002946706.1| (hypothetical protein VOLCADRAFT_116135 [Volvox carteri f. nagariensis] >gi|300267750|gb|EFJ51932.1| hypothetical protein VOLCADRAFT_116135 [Volvox carteri f. nagariensis]) HSP 1 Score: 182.956 bits (463), Expect = 4.739e-51 Identity = 99/205 (48.29%), Postives = 128/205 (62.44%), Query Frame = 0 Query: 196 GLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGY-TAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGA----------PPKIVAFTGKRQFRELFFDSKAYKS--ISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387 G+ EK GD +PLRL++VGHNPSA AW+ GHYYSNPSN MW LL I P A+DDDR P G+GF D+G G+PGTDSS+FK+ V +W R+ Y RL H RA A P VAF+GKRQF EL +A + ++ +G Q P +PF T ++V +S+SGAAA++ RE PY++LAE LK +PW Sbjct: 72 GVPEKLGD--QPLRLIIVGHNPSAHAWQSGHYYSNPSNHMWRLLVATGIAPSWVRGAQDDDRLPGAVGVGFLDVGCGHPGTDSSSFKSEVFLSWSRAFYTRLRDHMARAAASIGCTCGCCGAPCFVAFSGKRQFLELLNVDRAPRDRVKTVEHGPQVLLPREWPFPRTRTAVWVCSSTSGAAALTRQQREEPYRQLAEKLKGVPW 274
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|545365234|ref|XP_005647609.1| (hypothetical protein COCSUDRAFT_15676, partial [Coccomyxa subellipsoidea C-169] >gi|384249584|gb|EIE23065.1| hypothetical protein COCSUDRAFT_15676, partial [Coccomyxa subellipsoidea C-169]) HSP 1 Score: 157.918 bits (398), Expect = 1.396e-42 Identity = 88/209 (42.11%), Postives = 122/209 (58.37%), Query Frame = 0 Query: 192 ENCGGLREKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYT-AKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAG----------APPKIVAFTGKRQFRELFFDSKAY--KSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387 EN GL E+ GD PLRL++ G+NPS AW GHYYS+P+N MW +LR I P A+DD+R + G+GF D+G G+PGT S F + +W + Y RL H RA P +V F GKRQ+ EL + K + +GLQ RP+G+PF A T+++VL S+SGAA M+ A R P+QEL++ ++Q+ W Sbjct: 2 ENAKGLPERLGD--MPLRLIVGGNNPSDHAWSTGHYYSHPANWMWRILRKTGIAPAWVKGAQDDERMVTEAGVGFLDVGCGHPGTLLSEFSSQTFQSWAPAFYTRLKMHMDRASKNSGCVCGKCGAPAVVGFAGKRQWMELLNVGRKGRDKYTKLDHGLQHMRPEGWPFPAS-TEVWVLPSTSGAAPMATADRMGPWQELSDRVEQMEW 207
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|301112152|ref|XP_002905155.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095485|gb|EEY53537.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 157.918 bits (398), Expect = 2.483e-42 Identity = 90/194 (46.39%), Postives = 117/194 (60.31%), Query Frame = 0 Query: 204 PERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNV-------KIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFPFNA-DETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPWEV 389 PER LRL++VGHNPS AW+ G+ YSNP+NRMW LL I+P + + P G+GFT +G PG D+S + + AWR S +QRL HA P ++AF+GKRQF LF S A I SYG QS P G+P +++++VL SSSG AAM+ A R +PYQ+LAE L+QIPW V Sbjct: 49 PERRLRLLIVGHNPSDHAWKTGYSYSNPTNRMWMLLTGTLSPHSWEGIVPSTARIDEQNILPDVHGVGFTSIGL-EPGNDASKYGKATMEAWRTSFFQRLRRHALPHA--PILIAFSGKRQFSYLF--SPALSKIE-SYGKQSKLPPGWPHELRADSEVWVLPSSSGRAAMTTAQRTLPYQQLAERLRQIPWGV 236
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|552827913|ref|XP_005847338.1| (hypothetical protein CHLNCDRAFT_134530 [Chlorella variabilis] >gi|307106992|gb|EFN55236.1| hypothetical protein CHLNCDRAFT_134530 [Chlorella variabilis]) HSP 1 Score: 158.303 bits (399), Expect = 2.436e-41 Identity = 97/251 (38.65%), Postives = 125/251 (49.80%), Query Frame = 0 Query: 199 EKYGDPERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNVKIIPEGYT--AKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRAGA----------PPKIVAFTGKRQFRELFFDS--------------------------------------------------KAYKSISISYGLQSARPDGFPFNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387 EK GD PLRLV+VGHNPS AW H+YSNP+N W +LR+ I P A DD + P+ G+GFTD+G G PGTDSS F A AWR + YQR+ + ARRA A P IVAF+GKRQF+ELF + +A + + G Q P+G+P D T+++V+TS+SGAA M+ R P+Q LAE L+Q PW Sbjct: 75 EKMGD--APLRLVIVGHNPSEHAWASSHFYSNPTNWFWRILRDTGIAPPAAISGAADDGKMPAVAGVGFTDVGSGAPGTDSSQFTAQDFEAWRPAFYQRMATQARRASAAIGCTCGACGAPCIVAFSGKRQFQELFAGAAGGGRGRSKGAAVAQAAPAAAGAAGPPLGEGAVAAAAAPQQQQQQRAPTLQARRPRRVDTGRQWVLPEGWPLPLD-TEVWVMTSTSGAAPMTRQQRLAPWQALAERLRQEPW 322
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|1214684047|gb|OWZ01664.1| (hypothetical protein PHMEG_00026906 [Phytophthora megakarya]) HSP 1 Score: 142.895 bits (359), Expect = 7.067e-36 Identity = 87/212 (41.04%), Postives = 116/212 (54.72%), Query Frame = 0 Query: 205 ERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNV-------KIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRA--------------------GAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFP--FNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387 ER LRL++VGHNPS AW+ G+ YSNP+NRMW LL ++P + + P G+GFT +G PG D+S + + AWR S ++RL HA + G P +VAF+GKRQF LF S I +YG Q+ P G+P AD ++++VL SSSG AAM+ A R +PYQ+LAE L QIPW Sbjct: 88 ERRLRLLIVGHNPSDHAWKTGYSYSNPTNRMWMLLTGTLAPHSWEGVVPSTARIVEQNIMPHIYGVGFTSIGL-EPGNDASKYGKTTMEAWRDSFFKRLRRHAAQVCLNDHSDIKHEESDVKKCELGHAPILVAFSGKRQFSWLF--SPPLSKIE-NYGRQTKLPPGWPHELRAD-SEVWVLPSSSGRAAMTTAQRTLPYQQLAERLHQIPW 294
BLAST of EWM27180.1 vs. NCBI_GenBank
Match: gi|568008605|gb|ETL82822.1| (hypothetical protein L917_17089 [Phytophthora parasitica] >gi|570316620|gb|ETO64568.1| hypothetical protein F444_17877 [Phytophthora parasitica P1976]) HSP 1 Score: 142.124 bits (357), Expect = 1.097e-35 Identity = 87/218 (39.91%), Postives = 118/218 (54.13%), Query Frame = 0 Query: 204 PERPLRLVLVGHNPSAAAWRDGHYYSNPSNRMWSLLRNV-------KIIPEGYTAKDDDRCPSTCGIGFTDLGYGNPGTDSSNFKAPVLHAWRRSLYQRLLSHARRA-------------------------GAPPKIVAFTGKRQFRELFFDSKAYKSISISYGLQSARPDGFP--FNADETKLFVLTSSSGAAAMSNAAREMPYQELAELLKQIPW 387 PER LRL++VGHNPS AW+ G+ YSNP+NRMW LL ++P + + + P+ G+GFT +G PG D+S + + AWR S +QRL HA + P ++AF+GKRQF LF S I +YG Q+ P G+P AD ++++VL SSSG AAM+ A R +PYQ+LAE L QIPW Sbjct: 87 PERRLRLLIVGHNPSDHAWKTGYSYSNPTNRMWMLLTGTLSPHSWEGVVPSTASIMEQNILPTVHGVGFTSIGL-VPGNDASKYGKATMEAWRDSFFQRLRRHAAQVCLNDHDAIVKQEDEGEEAQQTECTLPHAPILIAFSGKRQFSWLF--SPPLSKIE-NYGKQTRFPPGWPRELRAD-SEVWVLPSSSGRAAMTTAQRTLPYQQLAERLHQIPW 299 The following BLAST results are available for this feature:
BLAST of EWM27180.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10 Position : 0 Zoom : x 1
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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