EWM27147.1, cds3459 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|585109327|gb|EWM27147.1| (thioredoxin m [Nannochloropsis gaditana]) HSP 1 Score: 348.206 bits (892), Expect = 2.520e-121 Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0 Query: 1 MTGPRLPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEEIKDV 173 MTGPRLPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEEIKDV Sbjct: 1 MTGPRLPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEEIKDV 173
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|298711621|emb|CBJ32678.1| (thioredoxin-related protein [Ectocarpus siliculosus]) HSP 1 Score: 122.865 bits (307), Expect = 1.259e-31 Identity = 68/179 (37.99%), Postives = 103/179 (57.54%), Query Frame = 0 Query: 14 LSVAGLLVLIALTQAFVPTSVSKIKSV-RYVSGPKG-------------------RPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEEIKD 172 L+ A LL L+ AF+ + VS +++ R +S P G R A ++ V+GEELE +L E P++LDV+A WCGPC L E++K+ + K RVLK+DSDEE +A AL +YGLPT+ ++++G++ HR EG +PA E+ +L + + FG P E+ D Sbjct: 7 LATAVLLTLVGPGAAFIISPVSSTRALQRRLSSPTGIRNRDASQRDSSNTNCATSRRGRTAMQAAARLVTGEELEVELTEWELPMILDVFATWCGPCIQLKPEIEKLSQALEGKCRVLKLDSDEEEDMAGALNIYGLPTVIYMKDGKIQHRTEGFLPAEEMLQLADIHLFGKPPPEVTD 185
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|551569802|ref|XP_005770861.1| (hypothetical protein EMIHUDRAFT_61580, partial [Emiliania huxleyi CCMP1516] >gi|485621989|gb|EOD18432.1| hypothetical protein EMIHUDRAFT_61580, partial [Emiliania huxleyi CCMP1516]) HSP 1 Score: 112.464 bits (280), Expect = 1.343e-28 Identity = 57/141 (40.43%), Postives = 85/141 (60.28%), Query Frame = 0 Query: 20 LVLIALTQAFVPTSVSKIKSVRYVSGPKGR-PLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVN 159 LVL A +++ R P R P + G V +V+ EE E +L + +P+LLDV+A WCGPCQ++A E+DKV Y D+ RVLK+D+D+E +A L+V GLPT+ I + ++ R EGA+ A EL ++V+ Sbjct: 7 LVLAACITPLHALALTAAGGQRLALRPSSRSPALAMG--AVRQVTTEEFEAELQDCATPILLDVFAVWCGPCQLMAPEMDKVAEHYGDRCRVLKIDADDEAEVADTLQVRGLPTVLLINDMSVVMRAEGALMADELKEIVD 145
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|1189389462|gb|OSX76447.1| (hypothetical protein BU14_0190s0004 [Porphyra umbilicalis]) HSP 1 Score: 106.686 bits (265), Expect = 1.320e-25 Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 0 Query: 57 SGVLKVSGEELEKQL-AEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEE 169 S V +V + LE L + +P+L+D YA WCGPCQ L LD++ Y+ +LR+LKVD++ EP +ASAL + GLPT+ F+R+G L +R+EGA+ A EL +++ AP E Sbjct: 97 SAVTQVDHDGLEAALKNDSTTPLLVDFYAPWCGPCQFLLPVLDELATRYEGRLRILKVDTESEPELASALAIRGLPTLCFVRDGALKYRMEGALAADELASIIDQILLDAPATE 210
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|1210523219|dbj|GAX17856.1| (hypothetical protein FisN_18Hh059 [Fistulifera solaris]) HSP 1 Score: 100.908 bits (250), Expect = 7.077e-24 Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 0 Query: 14 LSVAGLLVLIALTQAFV-PTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQ----------LIHRVEGAMPASELTKLVNHYCFGAP 166 L+ LL+L++ T AF P SV + S+ G E V VSGE+LE L + P+++D YA WCGPC ++A E ++ K K++ +K+D+D+E +AS L + GLPT+ F+ + Q L R+EGAM + LV HY F P Sbjct: 4 LTATPLLLLVSSTHAFTAPRSVQRSVSLYAAEGE---------EKAVAMVSGEDLELLLQNMEQPLVVDAYATWCGPCLLMAPEFEQAAQELKGKVKFVKLDTDQEEEMASRLNIMGLPTLLFLDKYQDDENPDARAVLKGRIEGAMQKKSILDLVEHYFFDGP 158
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|551671159|ref|XP_005838337.1| (thioredoxin y [Guillardia theta CCMP2712] >gi|428182496|gb|EKX51357.1| thioredoxin y [Guillardia theta CCMP2712]) HSP 1 Score: 100.908 bits (250), Expect = 1.141e-23 Identity = 46/113 (40.71%), Postives = 74/113 (65.49%), Query Frame = 0 Query: 51 LMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCF 163 L MAG V V E E + E P+++D YA+WCGPC+++A +L++V KD++R LK+++DE R+A+ ++VY LPT+ I++G ++ R EGAM A+++ LV F Sbjct: 69 LRMAG--AVEAVDAETFEVIIQEETKPLVVDFYAEWCGPCRLVAPQLEEVAQTMKDQVRFLKINTDENERLATLMQVYALPTLLLIKDGAVVQRAEGAMMANQIRDLVKTSFF 179
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|493564582|ref|WP_006517946.1| (thiol reductase thioredoxin [Leptolyngbya sp. PCC 7375] >gi|425762732|gb|EKV03585.1| thioredoxin [Leptolyngbya sp. PCC 7375]) HSP 1 Score: 98.2117 bits (243), Expect = 1.305e-23 Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 0 Query: 67 LEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASEL 154 E LA P L+D YA WCGPCQ++AGEL KVK +DKL+++K+D+D +AS +++ LPT+ ++GQ + R+EGAM A++L Sbjct: 10 FEDMLAGSDKPTLVDFYANWCGPCQLMAGELKKVKDELQDKLQIVKIDTDRYDTLASKYQIHALPTMVLFKDGQEVDRIEGAMNATQL 97
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|504999620|ref|WP_015186722.1| (MULTISPECIES: thiol reductase thioredoxin [Chroococcaceae] >gi|428262899|gb|AFZ28845.1| thioredoxin [Gloeocapsa sp. PCC 7428] >gi|1115262037|gb|OKH25737.1| thioredoxin [Chroogloeocystis siderophila 5.2 s.c.1]) HSP 1 Score: 98.2117 bits (243), Expect = 1.787e-23 Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 0 Query: 71 LAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTK 156 LA+ PVL+D YA WCGPCQ++A L++V ++ +LRV+K+D+++ P IAS +V LPT+ F + GQ + R+EG MPA L + Sbjct: 14 LAQSNVPVLVDFYADWCGPCQMMAAILERVNAQFQQQLRVVKIDTEKYPEIASQYQVQALPTLVFFKHGQPVERIEGVMPADALIQ 99
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|553740629|ref|WP_023074805.1| (thiol reductase thioredoxin [Leptolyngbya sp. Heron Island J] >gi|553082588|gb|ESA34384.1| thioredoxin [Leptolyngbya sp. Heron Island J]) HSP 1 Score: 97.0561 bits (240), Expect = 5.002e-23 Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0 Query: 67 LEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASEL 154 E LA P L+D YA WCGPCQ++AGEL KVK +DKL+++K+D+D +AS +++ LPT+ ++GQ I R+EGAM A +L Sbjct: 10 FEDMLAGADKPTLVDFYATWCGPCQLMAGELKKVKDELQDKLQIVKIDTDRYNTLASKHQIHALPTMVLFKDGQEIDRIEGAMTAPQL 97
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|1210516578|dbj|GAX24507.1| (hypothetical protein FisN_18Lh059 [Fistulifera solaris]) HSP 1 Score: 97.4413 bits (241), Expect = 1.540e-22 Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 0 Query: 14 LSVAGLLVLIALTQAFV-PTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQ----------LIHRVEGAMPASELTKLVNHYCFGAP 166 L+ L +LI+ QAF P V + S+ G E V VSGE+LE L + P+++D YA WCGPC ++A E ++ K K++ +K+D+D+E +AS L + GLPT+ F+ + Q L R+EGAM + LV HY F P Sbjct: 4 LTAISLSLLISSAQAFTAPRRVQRSVSLYAAEGE---------EKAVAMVSGEDLELLLQNMEQPLVVDAYATWCGPCLLMAPEFEQAAQELKGKVKFVKLDTDQEEEMASRLNIMGLPTLLFLDKYQDDENPDARAVLKGRIEGAMQKKSILDLVEHYFFDGP 158 The following BLAST results are available for this feature:
BLAST of EWM27147.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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