rna3468, rna3468 (mRNA) Nannochloropsis gaditana

Overview
Namerna3468
Unique Namerna3468
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1868
Alignment locationCM002461.1:487443..488957 +

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Properties
Property NameValue
Productthioredoxin m
Orig transcript idgnl|cribi|Naga_100010g21.6117.mrna
Orig protein idgnl|cribi|Naga_100010g21.6117
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:487443..488957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g21gene3342Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3468rna3468-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27147.1cds3459Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3468 ID=rna3468|Name=rna3468|organism=Nannochloropsis gaditana|type=mRNA|length=1868bp
ACAGGTGACCTTTGGTAAGATCCTGGTTTATCAGCAGATGGTGGGCCCAA
AACGACGAACCTCCTTGGTCTTTGCAGTATTGATGCTGAGTACAACACGA
TCGTTTATCGCTTCTGCTTTCTCAAATGTACAAAATGCTGGGTTTCTGGG
ACGAGGAGGAGGTCAGATACCTGGCCGCGTCTTTCGGACAGCCGAGCAAA
GAAGAGGCTTGGTCCGCACGCCTTCGAGGGCGCCTCCCACAAAAGAGCTC
TTGGTTACCTCCCCAGATGAAGATACCACTGTTTCTACATACAACATGGA
GGATATTGTGAACGTCTGCAAGCGACGAGGTTTCGTGTTCCAATCTTCCG
AGATATATAATGGCTTCAATGGGTTCTACGACTACGGGCCCCTGGGTGTG
GAGCTCAAGAATAATATCAAGCAACGCTGGTGGCGGGACATGGTGCACAG
CCGTGACGATATGGTCGGTCTCGACTCCTCCATCATCGCCTCCCCCCGGG
TGTGGGAGGCCTCCGGTCACGTCGCCGGGTTCGTGGACCCCATGGTTGAT
TGCCGCGTGTCCAAGCTGCGCTACCGTGCCGACCAACTCTATTTCACCAA
GGTGGAGCTGCAGGAGGACGGGGAGGTGATTGGGTACATTGCTCTTCTGG
ACTCTGGCGACCTGCACGGCGAAGCGAGGAAGCTAGCAGAAAAGTTGAAA
AAAAAGGCCGGAAAAGAGGGGACGATCAAATTTCCCCTTGACATCAAAGA
TATGACCAAGGCTACAGTGGCCGAGATGGCGCTGATCCCTTCCCCAGCCA
CCGGGGAGCCGGGGTCCCTCACGCCGCCGCGAGCGTTCAACCTCATGTTC
CAGACCTCCGTGGGCGCGCTGGCCGACGCCTCCTCCACGGCCTTCCTTCG
GCCAGAGACAGCGCAAGGTATTTTCACCAACTTTAAGAACGTCCAGAGCA
CTGGTCGCGTCAAAGTGCCTTTCGGGATCGCTCAGATCGGTAAGGCATTC
CGTAACGAGATCACTCCCCGCAACTTCATCTTCCGGTCGAGGGAGTTTGA
GCAGATGGAGATCGAGTACTTCATTCCACCTGAGGAAGAGGTTTGGCCAG
ACTTTTACAACAAGTGGATCGAAACGGCCTGGCAATGGCTGACGAGCATC
GGCATGCGCGAAGATCTGATGGGAAGGGATGTGCACCTCAAAGGCGACCT
CGCCCACTACGCTAAGGCGTGCACTGACATTGTCTTCCGATTCCCGTTCG
GGCAAGTTGAGCTCCAAGGCATCGCTGCACGAGGAGACTACGATTTGACT
CAGCATCAGACCTCATCGGGCAAGTCCATGGAGTACTTCGACGAGGCCAA
CAAGCGCCGCTACGTGCCACACGTAATCGAGCCTTCCATCGGAGTGGATC
GCCTCTTCCTGGCACTCATATGCTCCGCGTACGCTGAGGATGAGATCGAA
GGCGAGAAACGAGTTGTCCTCAAGTTTCACCCGTCTATGGCTCCCATCAA
GGTGGGCGTTTTCCCTCTGGTGAAGAATAAGCCTGAGATAATGGAAAAAG
CTCGCGCTATATACGACCAGCTCAAGCGCCGGTACAATGTGTTTTGGGAT
GTGAGCGGAGCAATCGGTCGGAGGTACCGGCGGATGGACGAGGCCGGCAC
GCCCTTCTGTATCACTGTGGATTTCGACACCTTGGAAGACGACTCTGTCA
CGGTGAGGGAGCGAGACAGCACAAGACAGACGCGGATGAAAGTGGATGAT
CTGCTGGCCTTCTTTGATAAAGAAATAAATGGGTAGGCTCCCTAAGTCTC
CCCTCAGCTTATGAACTCGGGGCTCGAAAGCATCATCTTTCAAAGAACAT
CGGCACCGTGCAATCTTT
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protein sequence of rna3468

>rna3468-protein ID=rna3468-protein|Name=rna3468|organism=Nannochloropsis gaditana|type=polypeptide|length=173bp
MTGPRLPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRP
LMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKV
KGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMP
ASELTKLVNHYCFGAPEEEIKDV
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mRNA from alignment at CM002461.1:487443..488957+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3468 ID=rna3468|Name=rna3468|organism=Nannochloropsis gaditana|type=mRNA|length=1515bp|location=Sequence derived from alignment at CM002461.1:487443..488957+ (Nannochloropsis gaditana)
acctcctcctcgtcccagaAACCCAGCATTTTGTACATTTGAGAAAGCAG
AAGCGATAAACGATCCTTTGTGAAAGTAGGAGAAAGATATCCCGAGAAAT
AATGCAAATTAAGCCAGGGCAGAGTCCTAGCACGGGGTACGTACGCTTAA
GTAGTATCCAACCCATTCCCCTACGACATCCTTACGTGTTGTACTCAGCA
TCAATACTGCAAAGACCAAGGAGGTTCGTCGTTTTGGGCCCACCATCTGC
TGATAAACCAGGATCTTACCAAAGGTCACCTGTGATCGTGTGGTGTAAGC
AATTGAGGACCGCCATGTTGCCTCTCGCATATCGCCTTCCTCAGACGAAA
TCAGGCACGGAGTAATCAACGGGCGATGACGCTCGAGCCTTCGGGGACAA
TATCCGCCCGAGAATGCCTCTGACCACCTCAGTTCTCTCATGAAAGGCTC
TCAACTTCATTCACATGACTCTGCAGACGAGGGGATCGTCGCCTTCAAGT
CTATCAACTCGCAAGCCAAGCCGTAGCCGATGACGGGACCCCGACTGCCT
CTGTTGAGGAAGCAGTGCCTTTCTGTAGCCGGCCTTCTGGTGCTTATTGC
CCTCACGCAAGCCTTTGTCCCTACATCTGTTTCAAAGATTAAGTCAGGTG
AGAAGTGGTCATCTCGGGAGATGCCTGTTAATTGCGTGATGCTTGCGCGC
TCGGTTTTGTTGAGGAGAAAATTGGAGCATGTAGTATCTTCCTACGTGCT
CATGACGATCACTCCGAGGACCAATTTTGCGAGCGATGCTCTTTCTTAAG
CACACTGGCATTTTTAAAATATATATACAGTGCGTTACGTAAGTGGTCCC
AAGGGCAGGCCCCTCATGATGGCAGGGGAGAGTGGTGTGCTCAAAGTGAG
TGGGGAAGAACTCGAGAAGCAATTAGCGGAAGTGGGAAGCCCGGTTCTCC
TGGATGTGTACGCACAGTGGTGCGGCCCCTGTCAGATCCTAGCGGGGGAG
CTCGATAAGGTTAAGGGTTTGTACAAGGACAAGTTGAGAGTGTTAAAAGT
AGACTCGGACGAGGAACCCCGCATCGCTTCTGCCCTGAAGGTGTACGGCC
TGCCCACCATTTTCTTCATCCGAGAAGGCCAGCTGATTCACCGTGTGGAG
GGTGCAATGCCTGCTTCTGAGCTGACAAAATTGGTGAATCATTACTGTTT
CGGGGCGCCGGAAGAGGAGATTAAGGATGTCTAACTGGGTCAGCAAgact
ttggaggaggggcaagaagggaatGATGGATTCCGCACGGGAAGGGGACA
CCGTAGATTGTAATACACGTGACGCAAACGTTACTGTACATATGgatgga
ggatgatggaggtcGAGCGGTTGTCCCTCGGTcacgcgaggagggcggga
gccgGATAAcggcaagaagggggaaagacgggcTTGGGGCCCACGGAAAG
CATGGTGGTATGGCGGGAATAGCGAAAACAACAAATCGATAGCCCGAATC
TGAGGCCCACATTCG
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Coding sequence (CDS) from alignment at CM002461.1:487443..488957+

>rna3468 ID=rna3468|Name=rna3468|organism=Nannochloropsis gaditana|type=CDS|length=1044bp|location=Sequence derived from alignment at CM002461.1:487443..488957+ (Nannochloropsis gaditana)
ATGACGGGACCCCGACTGCCTCTGTTGAGGAAGCAGTGCCTTTCTGTAGC
CGGCCTTCTGGTGCTTATTGCCCTCACGCAAGCCTTTGTCCCTACATCTG
TTTCAAAGATTAAGTCAGTGCGTTACGTAAGTGGTCCCAAGGGCAGGCCC
CTCATGATGGCAGGGGAGAGTGGTGTGCTCAAAGTGAGTGGGGAAGAACT
CGAGAAGCAATTAGCGGAAGTGGGAAGCCCGGTTCTCCTGGATGTGTACG
CACAGTGGTGCGGCCCCTGTCAGATCCTAGCGGGGGAGCTCGATAAGGTT
AAGGGTTTGTACAAGGACAAGTTGAGAGTGTTAAAAGTAGACTCGGACGA
GGAACCCCGCATCGCTTCTGCCCTGAAGGTGTACGGCCTGCCCACCATTT
TCTTCATCCGAGAAGGCCAGCTGATTCACCGTGTGGAGGGTGCAATGCCT
GCTTCTGAGCTGACAAAATTGGTGAATCATTACTGTTTCGGGGCGCCGGA
AGAGGAGATTAAGGATGTCTAAATGACGGGACCCCGACTGCCTCTGTTGA
GGAAGCAGTGCCTTTCTGTAGCCGGCCTTCTGGTGCTTATTGCCCTCACG
CAAGCCTTTGTCCCTACATCTGTTTCAAAGATTAAGTCAGTGCGTTACGT
AAGTGGTCCCAAGGGCAGGCCCCTCATGATGGCAGGGGAGAGTGGTGTGC
TCAAAGTGAGTGGGGAAGAACTCGAGAAGCAATTAGCGGAAGTGGGAAGC
CCGGTTCTCCTGGATGTGTACGCACAGTGGTGCGGCCCCTGTCAGATCCT
AGCGGGGGAGCTCGATAAGGTTAAGGGTTTGTACAAGGACAAGTTGAGAG
TGTTAAAAGTAGACTCGGACGAGGAACCCCGCATCGCTTCTGCCCTGAAG
GTGTACGGCCTGCCCACCATTTTCTTCATCCGAGAAGGCCAGCTGATTCA
CCGTGTGGAGGGTGCAATGCCTGCTTCTGAGCTGACAAAATTGGTGAATC
ATTACTGTTTCGGGGCGCCGGAAGAGGAGATTAAGGATGTCTAA
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Synonyms
Publications