EWM27147.1, cds3459 (CDS) Nannochloropsis gaditana

Overview
NameEWM27147.1
Unique Namecds3459
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:487972..488089 +
Alignment locationCM002461.1:488273..488676 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27147.1
Productthioredoxin m
Orig transcript idgnl|cribi|Naga_100010g21.6117.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:487972..488089 +
CM002461.1supercontigCM002461.1:488273..488676 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0008152metabolic process
GO:0019725cellular homeostasis
GO:0006662glycerol ether metabolic process
GO:0045454cell redox homeostasis
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0015035protein disulfide oxidoreductase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005623cell
Vocabulary: INTERPRO
TermDefinition
IPR017937Thioredoxin_CS
IPR005746Thioredoxin
IPR013766Thioredoxin_domain
IPR012336Thioredoxin-like_fold
Homology
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|585109327|gb|EWM27147.1| (thioredoxin m [Nannochloropsis gaditana])

HSP 1 Score: 348.206 bits (892), Expect = 2.520e-121
Identity = 173/173 (100.00%), Postives = 173/173 (100.00%), Query Frame = 0
Query:    1 MTGPRLPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEEIKDV 173
            MTGPRLPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEEIKDV
Sbjct:    1 MTGPRLPLLRKQCLSVAGLLVLIALTQAFVPTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEEIKDV 173          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|298711621|emb|CBJ32678.1| (thioredoxin-related protein [Ectocarpus siliculosus])

HSP 1 Score: 122.865 bits (307), Expect = 1.259e-31
Identity = 68/179 (37.99%), Postives = 103/179 (57.54%), Query Frame = 0
Query:   14 LSVAGLLVLIALTQAFVPTSVSKIKSV-RYVSGPKG-------------------RPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEEIKD 172
            L+ A LL L+    AF+ + VS  +++ R +S P G                   R    A ++    V+GEELE +L E   P++LDV+A WCGPC  L  E++K+    + K RVLK+DSDEE  +A AL +YGLPT+ ++++G++ HR EG +PA E+ +L + + FG P  E+ D
Sbjct:    7 LATAVLLTLVGPGAAFIISPVSSTRALQRRLSSPTGIRNRDASQRDSSNTNCATSRRGRTAMQAAARLVTGEELEVELTEWELPMILDVFATWCGPCIQLKPEIEKLSQALEGKCRVLKLDSDEEEDMAGALNIYGLPTVIYMKDGKIQHRTEGFLPAEEMLQLADIHLFGKPPPEVTD 185          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|551569802|ref|XP_005770861.1| (hypothetical protein EMIHUDRAFT_61580, partial [Emiliania huxleyi CCMP1516] >gi|485621989|gb|EOD18432.1| hypothetical protein EMIHUDRAFT_61580, partial [Emiliania huxleyi CCMP1516])

HSP 1 Score: 112.464 bits (280), Expect = 1.343e-28
Identity = 57/141 (40.43%), Postives = 85/141 (60.28%), Query Frame = 0
Query:   20 LVLIALTQAFVPTSVSKIKSVRYVSGPKGR-PLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVN 159
            LVL A        +++     R    P  R P +  G   V +V+ EE E +L +  +P+LLDV+A WCGPCQ++A E+DKV   Y D+ RVLK+D+D+E  +A  L+V GLPT+  I +  ++ R EGA+ A EL ++V+
Sbjct:    7 LVLAACITPLHALALTAAGGQRLALRPSSRSPALAMG--AVRQVTTEEFEAELQDCATPILLDVFAVWCGPCQLMAPEMDKVAEHYGDRCRVLKIDADDEAEVADTLQVRGLPTVLLINDMSVVMRAEGALMADELKEIVD 145          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|1189389462|gb|OSX76447.1| (hypothetical protein BU14_0190s0004 [Porphyra umbilicalis])

HSP 1 Score: 106.686 bits (265), Expect = 1.320e-25
Identity = 51/114 (44.74%), Postives = 75/114 (65.79%), Query Frame = 0
Query:   57 SGVLKVSGEELEKQL-AEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCFGAPEEE 169
            S V +V  + LE  L  +  +P+L+D YA WCGPCQ L   LD++   Y+ +LR+LKVD++ EP +ASAL + GLPT+ F+R+G L +R+EGA+ A EL  +++     AP  E
Sbjct:   97 SAVTQVDHDGLEAALKNDSTTPLLVDFYAPWCGPCQFLLPVLDELATRYEGRLRILKVDTESEPELASALAIRGLPTLCFVRDGALKYRMEGALAADELASIIDQILLDAPATE 210          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|1210523219|dbj|GAX17856.1| (hypothetical protein FisN_18Hh059 [Fistulifera solaris])

HSP 1 Score: 100.908 bits (250), Expect = 7.077e-24
Identity = 59/164 (35.98%), Postives = 87/164 (53.05%), Query Frame = 0
Query:   14 LSVAGLLVLIALTQAFV-PTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQ----------LIHRVEGAMPASELTKLVNHYCFGAP 166
            L+   LL+L++ T AF  P SV +  S+    G          E  V  VSGE+LE  L  +  P+++D YA WCGPC ++A E ++     K K++ +K+D+D+E  +AS L + GLPT+ F+ + Q          L  R+EGAM    +  LV HY F  P
Sbjct:    4 LTATPLLLLVSSTHAFTAPRSVQRSVSLYAAEGE---------EKAVAMVSGEDLELLLQNMEQPLVVDAYATWCGPCLLMAPEFEQAAQELKGKVKFVKLDTDQEEEMASRLNIMGLPTLLFLDKYQDDENPDARAVLKGRIEGAMQKKSILDLVEHYFFDGP 158          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|551671159|ref|XP_005838337.1| (thioredoxin y [Guillardia theta CCMP2712] >gi|428182496|gb|EKX51357.1| thioredoxin y [Guillardia theta CCMP2712])

HSP 1 Score: 100.908 bits (250), Expect = 1.141e-23
Identity = 46/113 (40.71%), Postives = 74/113 (65.49%), Query Frame = 0
Query:   51 LMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTKLVNHYCF 163
            L MAG   V  V  E  E  + E   P+++D YA+WCGPC+++A +L++V    KD++R LK+++DE  R+A+ ++VY LPT+  I++G ++ R EGAM A+++  LV    F
Sbjct:   69 LRMAG--AVEAVDAETFEVIIQEETKPLVVDFYAEWCGPCRLVAPQLEEVAQTMKDQVRFLKINTDENERLATLMQVYALPTLLLIKDGAVVQRAEGAMMANQIRDLVKTSFF 179          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|493564582|ref|WP_006517946.1| (thiol reductase thioredoxin [Leptolyngbya sp. PCC 7375] >gi|425762732|gb|EKV03585.1| thioredoxin [Leptolyngbya sp. PCC 7375])

HSP 1 Score: 98.2117 bits (243), Expect = 1.305e-23
Identity = 41/88 (46.59%), Postives = 61/88 (69.32%), Query Frame = 0
Query:   67 LEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASEL 154
             E  LA    P L+D YA WCGPCQ++AGEL KVK   +DKL+++K+D+D    +AS  +++ LPT+   ++GQ + R+EGAM A++L
Sbjct:   10 FEDMLAGSDKPTLVDFYANWCGPCQLMAGELKKVKDELQDKLQIVKIDTDRYDTLASKYQIHALPTMVLFKDGQEVDRIEGAMNATQL 97          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|504999620|ref|WP_015186722.1| (MULTISPECIES: thiol reductase thioredoxin [Chroococcaceae] >gi|428262899|gb|AFZ28845.1| thioredoxin [Gloeocapsa sp. PCC 7428] >gi|1115262037|gb|OKH25737.1| thioredoxin [Chroogloeocystis siderophila 5.2 s.c.1])

HSP 1 Score: 98.2117 bits (243), Expect = 1.787e-23
Identity = 40/86 (46.51%), Postives = 60/86 (69.77%), Query Frame = 0
Query:   71 LAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASELTK 156
            LA+   PVL+D YA WCGPCQ++A  L++V   ++ +LRV+K+D+++ P IAS  +V  LPT+ F + GQ + R+EG MPA  L +
Sbjct:   14 LAQSNVPVLVDFYADWCGPCQMMAAILERVNAQFQQQLRVVKIDTEKYPEIASQYQVQALPTLVFFKHGQPVERIEGVMPADALIQ 99          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|553740629|ref|WP_023074805.1| (thiol reductase thioredoxin [Leptolyngbya sp. Heron Island J] >gi|553082588|gb|ESA34384.1| thioredoxin [Leptolyngbya sp. Heron Island J])

HSP 1 Score: 97.0561 bits (240), Expect = 5.002e-23
Identity = 42/88 (47.73%), Postives = 60/88 (68.18%), Query Frame = 0
Query:   67 LEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQLIHRVEGAMPASEL 154
             E  LA    P L+D YA WCGPCQ++AGEL KVK   +DKL+++K+D+D    +AS  +++ LPT+   ++GQ I R+EGAM A +L
Sbjct:   10 FEDMLAGADKPTLVDFYATWCGPCQLMAGELKKVKDELQDKLQIVKIDTDRYNTLASKHQIHALPTMVLFKDGQEIDRIEGAMTAPQL 97          
BLAST of EWM27147.1 vs. NCBI_GenBank
Match: gi|1210516578|dbj|GAX24507.1| (hypothetical protein FisN_18Lh059 [Fistulifera solaris])

HSP 1 Score: 97.4413 bits (241), Expect = 1.540e-22
Identity = 58/164 (35.37%), Postives = 85/164 (51.83%), Query Frame = 0
Query:   14 LSVAGLLVLIALTQAFV-PTSVSKIKSVRYVSGPKGRPLMMAGESGVLKVSGEELEKQLAEVGSPVLLDVYAQWCGPCQILAGELDKVKGLYKDKLRVLKVDSDEEPRIASALKVYGLPTIFFIREGQ----------LIHRVEGAMPASELTKLVNHYCFGAP 166
            L+   L +LI+  QAF  P  V +  S+    G          E  V  VSGE+LE  L  +  P+++D YA WCGPC ++A E ++     K K++ +K+D+D+E  +AS L + GLPT+ F+ + Q          L  R+EGAM    +  LV HY F  P
Sbjct:    4 LTAISLSLLISSAQAFTAPRRVQRSVSLYAAEGE---------EKAVAMVSGEDLELLLQNMEQPLVVDAYATWCGPCLLMAPEFEQAAQELKGKVKFVKLDTDQEEEMASRLNIMGLPTLLFLDKYQDDENPDARAVLKGRIEGAMQKKSILDLVEHYFFDGP 158          
The following BLAST results are available for this feature:
BLAST of EWM27147.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109327|gb|EWM27147.1|2.520e-121100.00thioredoxin m [Nannochloropsis gaditana][more]
gi|298711621|emb|CBJ32678.1|1.259e-3137.99thioredoxin-related protein [Ectocarpus siliculosu... [more]
gi|551569802|ref|XP_005770861.1|1.343e-2840.43hypothetical protein EMIHUDRAFT_61580, partial [Em... [more]
gi|1189389462|gb|OSX76447.1|1.320e-2544.74hypothetical protein BU14_0190s0004 [Porphyra umbi... [more]
gi|1210523219|dbj|GAX17856.1|7.077e-2435.98hypothetical protein FisN_18Hh059 [Fistulifera sol... [more]
gi|551671159|ref|XP_005838337.1|1.141e-2340.71thioredoxin y [Guillardia theta CCMP2712] >gi|4281... [more]
gi|493564582|ref|WP_006517946.1|1.305e-2346.59thiol reductase thioredoxin [Leptolyngbya sp. PCC ... [more]
gi|504999620|ref|WP_015186722.1|1.787e-2346.51MULTISPECIES: thiol reductase thioredoxin [Chrooco... [more]
gi|553740629|ref|WP_023074805.1|5.002e-2347.73thiol reductase thioredoxin [Leptolyngbya sp. Hero... [more]
gi|1210516578|dbj|GAX24507.1|1.540e-2235.37hypothetical protein FisN_18Lh059 [Fistulifera sol... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3468rna3468Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications