rna3460, rna3460 (mRNA) Nannochloropsis gaditana

Overview
Namerna3460
Unique Namerna3460
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length927
Alignment locationCM002461.1:465539..466584 -

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Properties
Property NameValue
ProductPleckstrin like protein
Orig transcript idgnl|cribi|Naga_100010g13.6115.mrna
Orig protein idgnl|cribi|Naga_100010g13.6115
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:465539..466584 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100010g13gene3334Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3460rna3460-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27145.1cds3451Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3460 ID=rna3460|Name=rna3460|organism=Nannochloropsis gaditana|type=mRNA|length=927bp
ATGCTTCGGAGAATTCGTCATCAGGAATATAGAGTTTCGACAGCTCTTTT
GGGCTCCCTCAGGGGCTTCACAGCCGAGACTGTCCGAAAACGAAGGCCGC
CGTCCACTACTGTTGGCAAGGCAGTCGCGTCCCTAAATTCTGCCCGGGCA
AGCCAGCGAAGCTCGAGTCCGGTCACCTCCTCCCATTCACTGTTGCAATC
CTCACCTTCTGCTCCTTCGTCGTCCAGGGTCACAGAGGCGTTGCCAATAA
GAGATGCTTTGGCAGCAGTGCTTCAGTATGCAAAGGAGGAAAAACGGAGA
AATTTTACCGAGACTGTCGATCTTGCCATTCAGTTGGGAGTAGATCCTCG
AAAGCCCAATCAAAGCGTGCGAGGCGTACAAACATTGCCCAATGGCACTG
GTAAATCTGTTCGGGTGGCTGTGTTCGCCCGCGGAGACGACGCAGAAGCC
GCCAAGGCCGCGGGCGCCGCTGTGGTGGGCGCGGAGGATTTAGTGAAGGC
CATCCAAGACGGAGAGCTGGCGTTCGACCGGTGCGTGGCGACGCCCGAGG
TGATGCCGCTGGTGAGTCGGGTGGCGCGGGTCCTGGGCCCGCGCGGCCTC
ATGCCCAACCCAAAGATGGGCACCGTCACCAAGGACGTGGGCGCGGCTGT
CAAGTCGGCCATGGCGGGGCAGGCCCAGTTCAAGGCGGATCGATTCGGGA
TGGTGCACGTGGGGGTGGGCAAGGTCTCGTTCGAGCCAGAGGCCCTCTTG
GAGAACATCCGGGTATTGATGGTGGCGCTAGGCAACGCAAAGCCGGAGGG
GGCCAAGGGGAAGTATTTCAAGGGTGTCTTTCTCACCTCCACCATGGGCA
AGGCGGTGCCGGTGGAGGTGGCGACAGTCGATCCTCGGTCCTCGCGGTTC
ATGCTCGAGGCGGCACTCACGACCTGA
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protein sequence of rna3460

>rna3460-protein ID=rna3460-protein|Name=rna3460|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MRGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFA
KNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKE
KDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED
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mRNA from alignment at CM002461.1:465539..466584-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3460 ID=rna3460|Name=rna3460|organism=Nannochloropsis gaditana|type=mRNA|length=1046bp|location=Sequence derived from alignment at CM002461.1:465539..466584- (Nannochloropsis gaditana)
TTTACAGGCATCAGTGCTTCTTCCAGGTCGTTTTCACCATTGGATCTCGG
CCTTTGAGTCGTGCTCAAGCTGCTAGGAACGTTGCAGTGAATCGCCTGCT
CTTCCACTGTTGCTTACGAAAAGCACGACCGAAAGACGTGTGAAAAGGCC
GCCCTGAAGAACGCATACCTGATTTCTCTATCATGAGGGGCACCTACATG
GATCCCGAGACCAACATCCGATACGACACGAATAATGCGGATTTCGAAGG
TACGTAGACACGCCGGCCGAGGGGCCTGACCCCCTGTTGATCTCTTATGA
GTACGCTACAATTTCGCCCTTCACACTGCAAACAGGATGGTTGACCAAGC
AAAGCAGCTGGCTAAAGGAATGGAGAAGACGTTACTTCATTTTGAAAGGC
AGCAAGCTATTTTTTGCCAAGGTAGGGGAGTGAGAGTATTGGGCGTCCGG
GTGCTCACGGGGCCCCGTGGCGGAAATGTTGAGTTTCGACTCTGGAAAGG
GGCCATCGCAATGTTGCCCCCGTCATTAGAAGGCGCTACAGCGCTACATC
CCGAGGGGCGCGTGGCATAAGGCATGCGCCATGTCTGCATGATGACGGTC
TGCATGCTTCCTTTGCCCCGTGTTCGATCCTGCCTTCATCGACTCAGACC
GTGTCCATCCATTGCATTTCCCGCTTTGGCGCCCCCCCTATTCTTAGAAT
GAAATGTGCTCCCCGCACGGCATGATAGACCTGTCGTCGTGCATGACAGT
CAAGTCGGCGGAGCTTAAGGCTCAGAAGCGGAATGCTCTGGAGGTCTCCA
CGCCCGAGACGACCTTTTTGATGTACGCGGACACGGAGAAAGAGAAGGAC
GACTGGATCGGGGCGGTGGGTCGGGCAATCGTGCGAAGCTCCACCACCTA
CACGCAGGAGGTGGGGGAGGCGGGGGACGAGGATGACGACGGGAGTGACT
ACGAGGATTAAGGTGAAGTCTTGTACAGGCGAGAGGGGGGGCTTGCGCCA
CGGTAGAGCGAAGTGAAAGAAACAAAAGGCGGTTGCCACGTTTGCG
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Coding sequence (CDS) from alignment at CM002461.1:465539..466584-

>rna3460 ID=rna3460|Name=rna3460|organism=Nannochloropsis gaditana|type=CDS|length=1251bp|location=Sequence derived from alignment at CM002461.1:465539..466584- (Nannochloropsis gaditana)
AATGAAATGTGCTCCCCGCACGGCATGATAGACCTGTCGTCGTGCATGAC
AGTCAAGTCGGCGGAGCTTAAGGCTCAGAAGCGGAATGCTCTGGAGGTCT
CCACGCCCGAGACGACCTTTTTGATGTACGCGGACACGGAGAAAGAGAAG
GACGACTGGATCGGGGCGGTGGGTCGGGCAATCGTGCGAAGCTCCACCAC
CTACACGCAGGAGGTGGGGGAGGCGGGGGACGAGGATGACGACGGGAGTG
ACTACGAGGATTAAGATGGTTGACCAAGCAAAGCAGCTGGCTAAAGGAAT
GGAGAAGACGTTACTTCATTTTGAAAGGCAGCAAGCTATTTTTTGCCAAG
ATGAGGGGCACCTACATGGATCCCGAGACCAACATCCGATACGACACGAA
TAATGCGGATTTCGAAGAATGAAATGTGCTCCCCGCACGGCATGATAGAC
CTGTCGTCGTGCATGACAGTCAAGTCGGCGGAGCTTAAGGCTCAGAAGCG
GAATGCTCTGGAGGTCTCCACGCCCGAGACGACCTTTTTGATGTACGCGG
ACACGGAGAAAGAGAAGGACGACTGGATCGGGGCGGTGGGTCGGGCAATC
GTGCGAAGCTCCACCACCTACACGCAGGAGGTGGGGGAGGCGGGGGACGA
GGATGACGACGGGAGTGACTACGAGGATTAAGATGGTTGACCAAGCAAAG
CAGCTGGCTAAAGGAATGGAGAAGACGTTACTTCATTTTGAAAGGCAGCA
AGCTATTTTTTGCCAAGATGAGGGGCACCTACATGGATCCCGAGACCAAC
ATCCGATACGACACGAATAATGCGGATTTCGAAGAATGAAATGTGCTCCC
CGCACGGCATGATAGACCTGTCGTCGTGCATGACAGTCAAGTCGGCGGAG
CTTAAGGCTCAGAAGCGGAATGCTCTGGAGGTCTCCACGCCCGAGACGAC
CTTTTTGATGTACGCGGACACGGAGAAAGAGAAGGACGACTGGATCGGGG
CGGTGGGTCGGGCAATCGTGCGAAGCTCCACCACCTACACGCAGGAGGTG
GGGGAGGCGGGGGACGAGGATGACGACGGGAGTGACTACGAGGATTAAGA
TGGTTGACCAAGCAAAGCAGCTGGCTAAAGGAATGGAGAAGACGTTACTT
CATTTTGAAAGGCAGCAAGCTATTTTTTGCCAAGATGAGGGGCACCTACA
TGGATCCCGAGACCAACATCCGATACGACACGAATAATGCGGATTTCGAA
G
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Synonyms
Publications