EWM27145.1, cds3451 (CDS) Nannochloropsis gaditana

Overview
NameEWM27145.1
Unique Namecds3451
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:466336..466402 -
Alignment locationCM002461.1:466164..466249 -
Alignment locationCM002461.1:465624..465887 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27145.1
ProductPleckstrin like protein
Orig transcript idgnl|cribi|Naga_100010g13.6115.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:466336..466402 -
CM002461.1supercontigCM002461.1:466164..466249 -
CM002461.1supercontigCM002461.1:465624..465887 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011993PH-like_dom
IPR001849PH_domain
Homology
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|585109325|gb|EWM27145.1| (Pleckstrin like protein [Nannochloropsis gaditana])

HSP 1 Score: 289.271 bits (739), Expect = 4.407e-99
Identity = 138/138 (100.00%), Postives = 138/138 (100.00%), Query Frame = 0
Query:    1 MRGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED 138
            MRGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED
Sbjct:    1 MRGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED 138          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|1210523946|dbj|GAX17270.1| (hypothetical protein FisN_10Lh127 [Fistulifera solaris])

HSP 1 Score: 185.652 bits (470), Expect = 1.823e-55
Identity = 82/118 (69.49%), Postives = 102/118 (86.44%), Query Frame = 0
Query:    2 RGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTY 119
            R  Y+DP TNI Y+T  +D+EG+LTKQS+WLKEWRRRYFILKGSKLFF KNE+ +PHGM+DL+   TVKSA+LK++KR+++E+STPET +L+YADTE EKDDWIG VG+AIVR S TY
Sbjct:  185 RPPYVDPITNIVYETEPSDYEGYLTKQSAWLKEWRRRYFILKGSKLFFGKNELSAPHGMLDLALATTVKSADLKSKKRHSMEISTPETCYLLYADTESEKDDWIGRVGKAIVRCSRTY 302          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|1210522647|dbj|GAX18660.1| (hypothetical protein FisN_10Hh127 [Fistulifera solaris])

HSP 1 Score: 184.111 bits (466), Expect = 7.122e-55
Identity = 82/118 (69.49%), Postives = 101/118 (85.59%), Query Frame = 0
Query:    2 RGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTY 119
            R  Y+DP TNI Y+T  +D+EG+LTKQS WLKEWRRRYFILKGSKLFF KNE+ +PHGM+DL+   TVKSA+LK++KR+++E+STPET +L+YADTE EKDDWIG VG+AIVR S TY
Sbjct:  179 RPPYVDPITNIVYETEPSDYEGYLTKQSVWLKEWRRRYFILKGSKLFFGKNELSAPHGMLDLALATTVKSADLKSKKRHSMEISTPETCYLLYADTESEKDDWIGRVGKAIVRCSRTY 296          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|1072238619|gb|OEU23346.1| (PH domain-like protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 182.956 bits (463), Expect = 9.754e-55
Identity = 80/118 (67.80%), Postives = 100/118 (84.75%), Query Frame = 0
Query:    2 RGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTY 119
            R  Y+DP TNI YDT+  ++EG+LTKQS WLK+WRRRYF+LKGS LF+  N+  SPHGMIDL+ C TVKSA+LK++KRN+ E+STPE T+L+YADTE+EKDDWIG VG+AIVR S+TY
Sbjct:  129 RPPYVDPNTNIIYDTDQPEYEGFLTKQSMWLKDWRRRYFLLKGSNLFYCSNDYSSPHGMIDLALCTTVKSADLKSRKRNSFEISTPEITYLLYADTEQEKDDWIGRVGKAIVRCSSTY 246          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|299115983|emb|CBN75984.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 176.792 bits (447), Expect = 1.311e-54
Identity = 82/118 (69.49%), Postives = 97/118 (82.20%), Query Frame = 0
Query:    2 RGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTY 119
            R  + D +T +RYD NN D  GWL K+S WLK+WR R+F+LKGS LFFAK+E  +PHG IDLSSCMTVKSAE K  KRNALEVST ETT+ MYA+TEKEKDDWIGA+GRAIV++S+TY
Sbjct:    7 RPPFHDQKTGVRYDCNNPDHAGWLRKESVWLKDWRPRFFVLKGSNLFFAKSEYETPHGRIDLSSCMTVKSAEQKTSKRNALEVSTHETTYFMYANTEKEKDDWIGAIGRAIVQASSTY 124          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|676385449|ref|XP_009036003.1| (hypothetical protein AURANDRAFT_8195, partial [Aureococcus anophagefferens] >gi|323453094|gb|EGB08966.1| hypothetical protein AURANDRAFT_8195, partial [Aureococcus anophagefferens])

HSP 1 Score: 171.785 bits (434), Expect = 5.257e-53
Identity = 80/105 (76.19%), Postives = 91/105 (86.67%), Query Frame = 0
Query:   25 LTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDE 129
            LTKQS WLK+WRRRYF+LK SKLFF K E   PHGMIDL+SCMTVKSAE KA KRNALEVSTP+TT+LM+AD+EKEKDDWIGA+GRAIVR S+TYT + G  GD+
Sbjct:    1 LTKQSVWLKDWRRRYFVLKSSKLFFCKGESSVPHGMIDLASCMTVKSAEYKAHKRNALEVSTPDTTYLMFADSEKEKDDWIGAIGRAIVRCSSTYTNDDGMEGDD 105          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|553190814|ref|XP_005855267.1| (1-like protein [Nannochloropsis gaditana CCMP526] >gi|422293792|gb|EKU21092.1| 1-like protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 166.777 bits (421), Expect = 2.760e-51
Identity = 92/138 (66.67%), Postives = 92/138 (66.67%), Query Frame = 0
Query:    1 MRGTYMDPETNIRYDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED 138
            MRGTYMDPETNIRYDTNNADFE                                              VKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED
Sbjct:    1 MRGTYMDPETNIRYDTNNADFE----------------------------------------------VKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDDGSDYED 92          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|673016752|ref|XP_008862337.1| (hypothetical protein H310_01094 [Aphanomyces invadans] >gi|574481540|gb|ETW08532.1| hypothetical protein H310_01094 [Aphanomyces invadans])

HSP 1 Score: 151.754 bits (382), Expect = 6.611e-45
Identity = 71/117 (60.68%), Postives = 95/117 (81.20%), Query Frame = 0
Query:   14 YDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDED 130
            YD +N DFEG LTK+S WLKEWR RYF+LKG+KL+F + +  SPHG+IDLS C+TVKSAE K  KR   EV+TPE+T+ M+A++EK+K++WIGA+GRAIV+ S+++T E G A DE+
Sbjct:    5 YDLSNPDFEGELTKRSVWLKEWRARYFVLKGNKLYFCRVKGESPHGVIDLSECLTVKSAEEKTNKRYCFEVATPESTYYMHAESEKQKEEWIGAIGRAIVKFSSSFTGEEG-ANDEE 120          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|698777622|ref|XP_009821855.1| (hypothetical protein H257_00729 [Aphanomyces astaci] >gi|574123980|gb|ETV89455.1| hypothetical protein H257_00729 [Aphanomyces astaci])

HSP 1 Score: 149.443 bits (376), Expect = 4.689e-44
Identity = 70/117 (59.83%), Postives = 93/117 (79.49%), Query Frame = 0
Query:   14 YDTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDED 130
            +D +N DFEG LTK+S WLKEWR RYF+LKG+KL+F + +  SPHG+IDLS C+TVKSAE K  KR   EV+TPE T+ M+A++EK+K++WIGA+GR IV+ S+++T E G A DED
Sbjct:    5 FDLSNPDFEGELTKRSVWLKEWRTRYFVLKGNKLYFCRVKGESPHGVIDLSECLTVKSAEEKTNKRYCFEVATPEATYYMHAESEKQKEEWIGAIGRTIVKFSSSFTGEEG-ANDED 120          
BLAST of EWM27145.1 vs. NCBI_GenBank
Match: gi|1173951086|gb|OQR98999.1| (hypothetical protein ACHHYP_07492 [Achlya hypogyna])

HSP 1 Score: 147.132 bits (370), Expect = 4.277e-43
Identity = 68/118 (57.63%), Postives = 94/118 (79.66%), Query Frame = 0
Query:   15 DTNNADFEGWLTKQSSWLKEWRRRYFILKGSKLFFAKNEMCSPHGMIDLSSCMTVKSAELKAQKRNALEVSTPETTFLMYADTEKEKDDWIGAVGRAIVRSSTTYTQEVGEAGDEDDD 132
            D +N D+EG LTK+S WLKEWR RYF+LKG+KL+F + +  +PHG+IDLS C+TVKSAE K  KR   EV+TPE+T+ M+A++EK+KD+WIGA+GRAIV+ S+++T   G+ G +D D
Sbjct:    6 DLSNPDYEGLLTKRSVWLKEWRTRYFVLKGNKLYFCRAQGEAPHGVIDLSECLTVKSAEEKTNKRFCFEVATPESTYYMHAESEKQKDEWIGAIGRAIVKFSSSFT---GDDGYDDQD 120          
The following BLAST results are available for this feature:
BLAST of EWM27145.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109325|gb|EWM27145.1|4.407e-99100.00Pleckstrin like protein [Nannochloropsis gaditana][more]
gi|1210523946|dbj|GAX17270.1|1.823e-5569.49hypothetical protein FisN_10Lh127 [Fistulifera sol... [more]
gi|1210522647|dbj|GAX18660.1|7.122e-5569.49hypothetical protein FisN_10Hh127 [Fistulifera sol... [more]
gi|1072238619|gb|OEU23346.1|9.754e-5567.80PH domain-like protein [Fragilariopsis cylindrus C... [more]
gi|299115983|emb|CBN75984.1|1.311e-5469.49conserved unknown protein [Ectocarpus siliculosus][more]
gi|676385449|ref|XP_009036003.1|5.257e-5376.19hypothetical protein AURANDRAFT_8195, partial [Aur... [more]
gi|553190814|ref|XP_005855267.1|2.760e-5166.671-like protein [Nannochloropsis gaditana CCMP526] ... [more]
gi|673016752|ref|XP_008862337.1|6.611e-4560.68hypothetical protein H310_01094 [Aphanomyces invad... [more]
gi|698777622|ref|XP_009821855.1|4.689e-4459.83hypothetical protein H257_00729 [Aphanomyces astac... [more]
gi|1173951086|gb|OQR98999.1|4.277e-4357.63hypothetical protein ACHHYP_07492 [Achlya hypogyna... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3460rna3460Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications