rna3436, rna3436 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3436
Unique Name	rna3436
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3188
Alignment location	CM002461.1:418120..419446 -

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100038g34.7710.mrna
Orig protein id	gnl\|cribi\|Naga_100038g34.7710
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:418120..419446 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100038g34	gene3310	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3436	rna3436-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27255.1	cds3427	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002461.1:418120..419446-
coding sequence from alignment at CM002461.1:418120..419446-

mRNA sequence

>rna3436 ID=rna3436|Name=rna3436|organism=Nannochloropsis gaditana|type=mRNA|length=3188bp
GATAGTCTAATTTGCAACAGTCGAGTTTCTCATGCGGTCCAGATTGTGGG
CTGCTCAAGCATTGCTGTCAACGGTCTCATGTGCTCTATCCGGTTCCGAA
TCGCGCAGTCTTTCGTACTTGATGTATACCGTTGCAGCGTCTTTATTGTA
GATGTAAGACTTCAACTATCCACATTTGCATCCTGAATCACAGTACACTG
CAGGAGATTGGAAGGGTTTTCCTGCACGACCATATTGTTGCTCATCCCAT
TTTGAGGATCGACTTGGCTGTCCAGCCGACAGAGAAAAGCTGTCCTTTTA
CGGGTTTTCACTGCTTAAAAGATAAATCAATTGTAAAATATAAAGACTTT
TATTAATACACTACTCCATGGTCCGCCGGAATACGGACAATAATATAGCC
ATGTCGAGTCCCATGCAAGAAACAGATGAGACGGAGATAGACGCTGACGA
AGAAGGTTATGGATGTTCGCGCATCGAAGAAGTTATGCTGGAGGATGAGT
CCGAACGAGACAGGGCAGGTGTCCTCAAGCTATCTCCTAGGAACTCTGCT
CCAATTGCGCCTCCTCCCGGGAAAAAAAGGGCAGCTCCACAGCAATCTCG
CGCTGCCGGGGGGAGTTCATCTCTGGCTCCAAGCTCCTCATCGGAACATA
ACAGTTCTCACGCTGGAAAAAGTGATAACGCTAAGGAAAAGCCCGGTACA
TCAGCTGTGAGTGCAGAAATGATGCGTGTAGCATTTGCGGGATGGAATGA
GGCTGACGTAGGGCCCACGGACTCGCCCGTGGAGGAAGACATAGAGAGCG
CAGATGACGTACAGTCCTACCGAAGCAGCTATCCAGACCCTCAGGCTCAA
AAACTTCTACTTTCCGGACGCATTAATCAATTAATAGCCATTCTTAACAT
TGGATTTGGCCTGGTTTATCTATGTTGGCGTGTTTTCCGGTCCATGAATC
CGAAACACGACTGGCATGACTGGGCCCCCGTCGGCGCCTACTTTATCGAT
CCCGAGGATCCGGAGCGTGCGTGGTCCCTCAAAGAGGAGTTCAAGTACAA
CTGGTTCTGCTGGTTACTATTCGTTGCTGAGATCTTTTTCATGGTCAGCG
TTTGGCTGGGTCATGCCAGTCGATGCTTCCCGTCCAAGAGGACGAAGTGC
ACGATGGATGAGCTCGTGGACATTGACTACGAGCTTTCGGAGCGCACGGC
TGTCTGCGTCGTCATTCCCACCCGCGGCGAGTCCTTGAACATCCTCCGCG
AGGTAATCCTCAATGCTATGTCCCTTAACCTATGGCCTGGCCTCCTAGAC
GTCCGGAAAAATGCTCGTTTGGTGGTTGTGGATGACCGTCGACGTGCCGA
GGTTTTGTTGCTCATTGCCTTGTGCTATCGATTCGCTGCGCTCTTTTGCA
ATAACCGCAAGGTGCGCACACAGCTGAAATTGGAGGGCCGCGCAGGCATG
AGCCTCGCCGCCTTCTATGACCATTACTTGGCGTGTACAGCGGGATTCGG
GCAGACATATGCAGATAGTTTCATTGACATATTCTCCATAGCGGACATGA
TCCACAAGATGTGCAAAGACGATTGCATCCCGCCCGAATGGGATGGTCTA
GAGCTACCTTCCGGGACTCGGATCGAGCCTAAACAAACACAGACGGACCT
GAGCAAAGTACCCCGCTTGCGGGAAGACTTTGCGGACGTGCGAAGCATTC
TGACATTAGTGTACTTCTCTAGGCCAAGCAACGAGTTTCCTGCCTCCTGC
CCGGTGGCGGGGATGCTCAACAGTCTTCTCTTCCCGGAGGACCCCGCCGA
TGCCAACATTCTGGGCATGGCCCGCTACATGGTAGTCAATGATCCTCGTC
ACGCGCTTCAGACCGAGTTCCTTCAGCGCACCATGCCGTACTTCTTCCGT
CCCGTCGCCGACACAGAAATGGGCACCGTTGAGTACGAGGAATGCCAAGA
TGTGGCGTTCGTGCAGGTCGCTCTTCGTGTCAAGAAAGCCGACAAGTTTG
ATACGGATCCCTTGTCCAACCGGGACCTGATCCTGCAGGATATCATAAAC
ATTGGGCGGGACGGTGTGGGAGGAGCCATGGCCAAGAGCAACGGCTGCAT
GTATCGTATCGACGTCTTGAAGAGCGGCAAAAACGTCCGCGGGCGGAGCG
TCGTCTCGGAGGAGGATCCGACGCAACTGCTGGGGAAAGGCCTGGGTTTC
TCCACCCTGACGCGATGCGAGTGGCTGCCAACCTCCGTGGAGCTCTTCCA
CCGAGGTTTCCGTTCCGTGTACGTGAACGAGATCGACGAGACCCTCTCCT
TGTGCTTCCACGAGACACCGCGCCTGACGGGCCGCGTGGAGGAGGTGTTT
GACATCCACTTGAGCGCCACGGAAGTGCTCGTCCGGGACCCGCTGGGCCT
GCTTAAAGCCCGTTACACGACCCGGATGCACCGGCTCTTCGTGATGGAGG
ACCTGTGGCAGGGATTCTTCATGGCTATGGGCATCGAGCTCCTGCTCCTG
TGCGCGGTCCTGTACTCGTACCTGTGGAGGACGCCTTTCTACACGCATGG
CATTGAAGTGCTCTTCTTCTTCCTCCCCTACTACTTTACCGCCGCCTTGC
CCACGGCCGCGGCCCTCAATTGGAAGCGAACCCCTCCTGACCCGGCGTTC
CGATCCGTCCAGCTCAGCTTCGCCACGGCCTTCGTCCCCTTCGTGGTGTA
CATCGGCTCTGGGCTCGCCGAGATGTCCCGGGTCGTCTGCAGCCGGTCGG
GCCGGCGTCAGTTCAGCGTGGAGGGCTGCCCGACCTGGCCTCTGTACATG
ACCCTGGTCCTGCTCCTCGCCAGCATGGTCGTCACCTTCATCAATTGGGC
GCGCGGGAATTTCCGGCACGCAGGCCTCTGGGTCACCTCCGTGGTGATGC
TCGCCTGCGCCATCAGCATGATCCTCCCCACTGCCATGCGCGGCGTCAAG
TTCCACGGCATCCCCAGCTTCTACCTCCGGTACGCGGCCCTGGCCGTGGT
CCTGGTGGTGGTGGCCTTCTGGCAGGGGGCGGGGGTGGAGGATCCGCGCG
CCCCGCCCTCGGCAGCATAGGCGAAAAGTTTTCTTATTGTCCTTGGCAAG
GGTGCACGGGGACTCTAGGGAAGGGGGGGGTAATCGGCCTGTCGCCTGGG
CTAGGAGATTTCAAAGTTAGCATGCAGGAACCAGGAAG

protein sequence of rna3436

>rna3436-protein ID=rna3436-protein|Name=rna3436|organism=Nannochloropsis gaditana|type=polypeptide|length=189bp
MSLMFISVLGKRSSAASAVKGKQRARKLQREDRLFSLSSVTSPPMVTVRR
AVTEEGDEEEGDQEEEEEEEEEEEEEEEGEEEEEGQEEEEEEEEEEEGEE
EEEEGEGEEEEEEEEEEEEEEEEEEEVSPKQRKRPSTTSSRRSAKTGVRG
RGSGRGGGRRPPGGRAQKRSRRPAKRSPSPKKKAARRRR

mRNA from alignment at CM002461.1:418120..419446-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3436 ID=rna3436|Name=rna3436|organism=Nannochloropsis gaditana|type=mRNA|length=1327bp|location=Sequence derived from alignment at CM002461.1:418120..419446- (Nannochloropsis gaditana)
ACGTGCTCTACGGCAGATATACAAGCACGTGTACATGGCTTTAAACTATC
TCTTTAATTACGACGATTCATGTACAGGAAGGCCGGTATTGTTTTCTGTG
CTGTCGCATTTGCTGCGGTAAAGGTCCATTGGAGCTTCCTCCTCTCTGAG
GAAGCACACAGGAAATCGGGAGCCGGAGTGTTGCGCTTCAAGATGATTGT
AGAGGAGAATACCCTTGAGCAGCGGCGTGCGGGGTGAGCTATGATCGACG
GTGGGCGGAGAATGCGAGGAAAAGCCATGTATGGGGAGGAGGTGTATCGA
ATTTCACATCCTCTCTCTTTCGTCCCAAATCAACAACCAGACTCAAGGCG
GAGCTGCAGAACATTGAACGACAAATTTTCGACTTGGAGGGGAGTTATTT
GGACGACACATTGACGACAGGCAATATCCTGCGGGGCTGGGATGCGGCGT
TGACGAATGGGAGCACGAGGTAAGAAGAGGGTGGGATGGAGGGGCGGATT
AAATTCTGGCAAGCCTGACGAATGGAAAGACCGGGGCACGTTTGATGCAC
ACAGTCCTTTGTACGAGCTTGACCAACCATGTCACTCATGTTCATTTCCG
TTTTGGGAAAACGTTCCAGTGCGGCCTCTGCTGTCAAGGGAAAACAACGC
GCGAGAAAGCTCCAACGAGAGGTAATGCCACACCGGGAGGCCGGAGACGA
CGCCAGTTCCAGGCAATTTTAACGAATTGTAACCCACGCCTGCACAGGAC
CGCTTGTTCTCTCTCTCCTCCGTCACGTCACCGCCAATGGTGACTGTGAG
GAGAGCCGTGACCGAGGAGGGAGATGAGGAGGAAGGTGATCAGGAGGAGG
AAGAAGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAGGGGGAAGAAGAG
GAAGAGGGCCAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAAGAAGGTGA
AGAAGAGGAGGAGGAGGGGGAAGGGGAAGAAGAAGAAGAAGAAGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGCCCAAAGCAGCGT
AAAAGGCCGTCGACAACTTCGAGCAGGCGGAGCGCGAAGACAGGGGTCAG
AGGCCGAGGCAGTGGTAGGGGCGGGGGCAGGCGACCACCTGGAGGGAGGG
CTCAGAAGCGGTCGAGGCGACCCGCCAAGAGAAGCCCCAGCCCGAAGAAG
AAAGCAGCGAGGCGCCGCCGGTGATAGGGCCTAGATGGGTGCAAGCCTGG
AGTGCTGCGTGCCCCTGTGGCCAGGCGTTTCTATACATTGATTAAAACGC
AAAGCAAATAAGTAAAAGGAATGTGTA

Coding sequence (CDS) from alignment at CM002461.1:418120..419446-

>rna3436 ID=rna3436|Name=rna3436|organism=Nannochloropsis gaditana|type=CDS|length=1140bp|location=Sequence derived from alignment at CM002461.1:418120..419446- (Nannochloropsis gaditana)
GACCGCTTGTTCTCTCTCTCCTCCGTCACGTCACCGCCAATGGTGACTGT
GAGGAGAGCCGTGACCGAGGAGGGAGATGAGGAGGAAGGTGATCAGGAGG
AGGAAGAAGAGGAGGAGGAGGAAGAGGAAGAGGAAGAAGAGGGGGAAGAA
GAGGAAGAGGGCCAGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAAGAAGG
TGAAGAAGAGGAGGAGGAGGGGGAAGGGGAAGAAGAAGAAGAAGAAGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAAGTGAGCCCAAAGCAG
CGTAAAAGGCCGTCGACAACTTCGAGCAGGCGGAGCGCGAAGACAGGGGT
CAGAGGCCGAGGCAGTGGTAGGGGCGGGGGCAGGCGACCACCTGGAGGGA
GGGCTCAGAAGCGGTCGAGGCGACCCGCCAAGAGAAGCCCCAGCCCGAAG
AAGAAAGCAGCGAGGCGCCGCCGGTGAATGTCACTCATGTTCATTTCCGT
TTTGGGAAAACGTTCCAGTGCGGCCTCTGCTGTCAAGGGAAAACAACGCG
CGAGAAAGCTCCAACGAGAGGACCGCTTGTTCTCTCTCTCCTCCGTCACG
TCACCGCCAATGGTGACTGTGAGGAGAGCCGTGACCGAGGAGGGAGATGA
GGAGGAAGGTGATCAGGAGGAGGAAGAAGAGGAGGAGGAGGAAGAGGAAG
AGGAAGAAGAGGGGGAAGAAGAGGAAGAGGGCCAGGAAGAGGAGGAGGAG
GAAGAGGAGGAGGAAGAAGGTGAAGAAGAGGAGGAGGAGGGGGAAGGGGA
AGAAGAAGAAGAAGAAGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGG
AGGAAGTGAGCCCAAAGCAGCGTAAAAGGCCGTCGACAACTTCGAGCAGG
CGGAGCGCGAAGACAGGGGTCAGAGGCCGAGGCAGTGGTAGGGGCGGGGG
CAGGCGACCACCTGGAGGGAGGGCTCAGAAGCGGTCGAGGCGACCCGCCA
AGAGAAGCCCCAGCCCGAAGAAGAAAGCAGCGAGGCGCCGCCGGTGAATG
TCACTCATGTTCATTTCCGTTTTGGGAAAACGTTCCAGTGCGGCCTCTGC
TGTCAAGGGAAAACAACGCGCGAGAAAGCTCCAACGAGAG

Synonyms

Publications