EWM27255.1, cds3427 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27255.1
Unique Name	cds3427
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002461.1:418776..418868 -
Alignment location	CM002461.1:418223..418699 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27255.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100038g34.7710.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002461.1	supercontig	CM002461.1:418776..418868 -
CM002461.1	supercontig	CM002461.1:418223..418699 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM27255.1 vs. NCBI_GenBank
Match: gi|585109436|gb|EWM27255.1| (hypothetical protein Naga_100038g34 [Nannochloropsis gaditana])

HSP 1 Score: 325.479 bits (833), Expect = 9.652e-112
Identity = 189/189 (100.00%), Postives = 189/189 (100.00%), Query Frame = 0

Query:    1 MSLMFISVLGKRSSAASAVKGKQRARKLQREDRLFSLSSVTSPPMVTVRRAVTEEGDEEEGDQEEEEEEEEEEEEEEEGEEEEEGQEEEEEEEEEEEGEEEEEEGEGEEEEEEEEEEEEEEEEEEEVSPKQRKRPSTTSSRRSAKTGVRGRGSGRGGGRRPPGGRAQKRSRRPAKRSPSPKKKAARRRR 189
            MSLMFISVLGKRSSAASAVKGKQRARKLQREDRLFSLSSVTSPPMVTVRRAVTEEGDEEEGDQEEEEEEEEEEEEEEEGEEEEEGQEEEEEEEEEEEGEEEEEEGEGEEEEEEEEEEEEEEEEEEEVSPKQRKRPSTTSSRRSAKTGVRGRGSGRGGGRRPPGGRAQKRSRRPAKRSPSPKKKAARRRR
Sbjct:    1 MSLMFISVLGKRSSAASAVKGKQRARKLQREDRLFSLSSVTSPPMVTVRRAVTEEGDEEEGDQEEEEEEEEEEEEEEEGEEEEEGQEEEEEEEEEEEGEEEEEEGEGEEEEEEEEEEEEEEEEEEEVSPKQRKRPSTTSSRRSAKTGVRGRGSGRGGGRRPPGGRAQKRSRRPAKRSPSPKKKAARRRR 189

The following BLAST results are available for this feature:

BLAST of EWM27255.1 vs. NCBI_GenBank

BLAST of EWM27255.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585109436\|gb\|EWM27255.1\|	9.652e-112	100.00	hypothetical protein Naga_100038g34 [Nannochlorops...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna3436	rna3436	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications