EWM27350.1, cds3321 (CDS) Nannochloropsis gaditana

Overview
NameEWM27350.1
Unique Namecds3321
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:133810..134562 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27350.1
Productprotein of unknown function DUF218
Orig transcript idgnl|cribi|Naga_100394g1.5316.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:133810..134562 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003848DUF218
Homology
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|585109559|gb|EWM27350.1| (protein of unknown function DUF218 [Nannochloropsis gaditana])

HSP 1 Score: 496.893 bits (1278), Expect = 1.204e-177
Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query:    1 MVASAISTYAVAPGLALVLVVILAVGRARPFSPSLHRRHPRSGSFLPRQLQRVWTGRDDRPCHGKDTIAFRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ 250
            MVASAISTYAVAPGLALVLVVILAVGRARPFSPSLHRRHPRSGSFLPRQLQRVWTGRDDRPCHGKDTIAFRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ
Sbjct:    1 MVASAISTYAVAPGLALVLVVILAVGRARPFSPSLHRRHPRSGSFLPRQLQRVWTGRDDRPCHGKDTIAFRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ 250          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|873223627|emb|CEM28362.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 101.679 bits (252), Expect = 1.665e-22
Identity = 71/184 (38.59%), Postives = 92/184 (50.00%), Query Frame = 0
Query:   69 AFRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGE-----EGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRK 247
            A  +DA+LVLGGDR RE  A+ L   G L  L  P A                 + +SSGALS +++    L     ++ DRRA+ T+TNF +  P FR  ++R V+V TS  H  R + V  IVLGS  +RV  L +           E  GR  RD LRAW WVW G +   V  W HP R+
Sbjct:   70 AVLSDALLVLGGDRAREAAALTLLKDGHL--LLSPSAM----------------VIISSGALSHEDITALGLST-DHVIFDRRAVDTVTNFVTTGPLFREHRVRQVMVATSDYHARRGIAVARIVLGSFRMRVVPLVIASSEKMRQERGETRGRVIRDCLRAWLWVWAGLDLSSVTVWLHPTRQ 234          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|515866046|ref|WP_017296674.1| (hypothetical protein [Nodosilinea nodulosa])

HSP 1 Score: 92.4337 bits (228), Expect = 2.122e-19
Identity = 65/170 (38.24%), Postives = 85/170 (50.00%), Query Frame = 0
Query:   73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFR----RIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREV 238
            D +LVLGG  HRE TA RL M      LHP                 Q+ ++ SSG L PD   P      R    RI LD +A+ T+TNFT+L+ TFR   + H+ +VTS  H+ RA  + +IVLGS  I    +        E   R GRD +R+W W+ TGW G  +
Sbjct:   53 DGILVLGGQPHREATAARLAM------LHP-----------------QLHIWSSSG-LGPDMAYP-IFDALRVSRDRITLDYQAVDTVTNFTTLVKTFRQQHVHHLYLVTSDYHMPRARAIATIVLGSHHIAFTPVVAPSSQATESPFRIGRDMVRSWIWLTTGWSGAAI 197          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|504969617|ref|WP_015156719.1| (hypothetical protein [Chroococcidiopsis thermalis] >gi|428011616|gb|AFY90179.1| protein of unknown function DUF218 [Chroococcidiopsis thermalis PCC 7203])

HSP 1 Score: 87.4261 bits (215), Expect = 1.834e-17
Identity = 57/164 (34.76%), Postives = 80/164 (48.78%), Query Frame = 0
Query:   73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELP-PATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEG 235
             A++ LGGD  RE  AV   +       HPP                 + +++SS  L    LP P++     RI +DRRA+ T+TNFTSL+  F+    +HV ++TS  H++RA  +   V GSQGI V  + V      E W    RD  R W W++TG  G
Sbjct:   53 QAIIALGGDPRRESFAVDFALR------HPP-----------------LEIWISSPYLKAFNLPDPSSSR--SRIHIDRRAVDTVTNFTSLVAEFKQRYFQHVYLITSDFHMARAKAIAFFVFGSQGIAVTPISVPSNQQPESWFHISRDVCRTWLWMFTGRTG 191          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|1176602504|ref|WP_082429485.1| (hypothetical protein [Pseudanabaena sp. 'Roaring Creek'])

HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-17
Identity = 57/164 (34.76%), Postives = 82/164 (50.00%), Query Frame = 0
Query:   73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPF----RRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTG 232
             A+LVLGG   RE                        F+    L++ Q+P+FVSSG  SP+E              R+ LD RA+ T+TNFT ++  F+  KI  V V+TS+ H+ RAL +G IVLGS+GI +  + +      E   +  RD LR+ +W+ TG
Sbjct:   21 QAILVLGGSPTRE-----------------------KFAAQFALEHPQLPIFVSSG--SPEEYAQYVFDQAGVKRDRLHLDYRAVDTVTNFTVMVTEFQQRKITDVYVITSEFHMPRALVIGKIVLGSRGIEMHPVAIPSQIKSENPTKSLRDGLRSVFWLVTG 159          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|1175425116|ref|WP_081972903.1| (hypothetical protein [Leptolyngbya sp. KIOST-1])

HSP 1 Score: 86.6557 bits (213), Expect = 3.613e-17
Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = 0
Query:   73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPP---ATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREV 238
            D +L+LGG R RE TA RL       SL P                  +P+++SSG L PD+  P   A      RI LD +A+ T+TNFT+L+ TF+   + H+ +VTS  H++RA  + +I+LGS  I    +        E   R GRD +R+W W+ TGW G  +
Sbjct:   53 DGILILGGQRDREGTAARL------ASLRP-----------------GLPVWLSSG-LGPDQAYPIFDALGVSRDRITLDYQAVDTVTNFTTLVKTFQHQNVHHLYLVTSDYHMARARAIATIILGSHRIAFTPVVTPSTRPAESPFRIGRDMVRSWIWLATGWSGAAI 197          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|504977636|ref|WP_015164738.1| (hypothetical protein [Pseudanabaena sp. PCC 7367] >gi|427989514|gb|AFY69769.1| protein of unknown function DUF218 [Pseudanabaena sp. PCC 7367])

HSP 1 Score: 85.8853 bits (211), Expect = 4.967e-17
Identity = 52/133 (39.10%), Postives = 74/133 (55.64%), Query Frame = 0
Query:  104 PARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLH----PFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTG 232
            P+R   F+    LD+ Q+P++VSSG  SP +           P  R+ LD RA+ T+TNFT+L+  F A  I  V V+TS  H+ RA  +G IVLGSQGIR+  + +     +E   +  RD  R+ +W  TG
Sbjct:   46 PSREQ-FAAQFALDHPQLPIWVSSG--SPVDYAEYVFQEAGIPLDRVTLDYRAVDTVTNFTTLVDDFAANDITDVYVITSDYHMPRAKVIGKIVLGSQGIRMHPVEIPSKYNQELAVKSWRDGARSVFWTVTG 175          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|915593040|ref|WP_050857469.1| (hypothetical protein [Acaryochloris sp. CCMEE 5410])

HSP 1 Score: 85.8853 bits (211), Expect = 5.002e-17
Identity = 59/170 (34.71%), Postives = 88/170 (51.76%), Query Frame = 0
Query:   73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFR-------RIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEG 235
             A+LVLGG+  RE +A ++    Q E+               HLD     +++SSG       P   L  F+       R+ LD +A  T+TNFT+L+P F+  +I+H+ V+TS  H+ RA  + SIVLGSQGI    + V     +E   +  RD+ R+  WV+TG+ G
Sbjct:   42 QAILVLGGNPDREKSAAQI---AQFEN---------------HLD-----IWISSGTK-----PEKALSFFQALGIERSRVHLDYQATDTVTNFTTLVPKFKQRRIQHIYVITSNDHMPRAKAIASIVLGSQGITFTPVYVPTNNEQEPIYKVLRDSGRSLIWVFTGFSG 183          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|856995385|ref|WP_048347352.1| (hypothetical protein [Synechococcus sp. WH 8020] >gi|852373116|gb|AKN61330.1| hypothetical protein WB44_09770 [Synechococcus sp. WH 8020])

HSP 1 Score: 84.7297 bits (208), Expect = 1.577e-16
Identity = 68/164 (41.46%), Postives = 89/164 (54.27%), Query Frame = 0
Query:   75 VLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDE----LPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGV--EDGGGEEGWGRRGRDALRAWWWVWTG 232
            +LVLGGD  RE   +RL  A QLE                      +PL VS G+ +P+     +  A L    R+VLD RA  T TNFTSL+   +   +RHV +VTS+ HL RA+TVG +V GS+GIR+ G+ V  +   G+E  G+R  D LRA  WV TG
Sbjct:   40 ILVLGGDLDRERVGLRL--AQQLE----------------------LPLVVSGGS-NPEYAKWLVRDAGLDQ-SRVVLDYRAKDTFTNFTSLVDDLKRDGVRHVYLVTSEDHLPRAMTVGRLVAGSRGIRLTGVPVACQPSCGKETLGKRLGDGLRALTWVVTG 177          
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|497312127|ref|WP_009626344.1| (DUF218 domain-containing protein [Pseudanabaena biceps] >gi|443019429|gb|ELS33520.1| protein of unknown function DUF218 [Pseudanabaena biceps PCC 7429])

HSP 1 Score: 84.3445 bits (207), Expect = 2.022e-16
Identity = 57/164 (34.76%), Postives = 81/164 (49.39%), Query Frame = 0
Query:   73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPF----RRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTG 232
             A+LVLGG   RE                        F+    L++ Q+P+FVSSG  SP+E              RI LD RA+ T+TNFT ++  F+  KI  V V+TS+ H+ RAL +G IVLGS+GI +  + +      E   +  RD LR+ +W+  G
Sbjct:   45 QAILVLGGSPTRE-----------------------RFAAQFALEHPQLPIFVSSG--SPEEYAQYVFDQAGVKRDRIHLDYRAVDTVTNFTVMVTEFQQRKITDVYVITSEFHMPRALVIGKIVLGSRGIEMHPVAIPSQIKSENPTKSLRDGLRSVFWLVMG 183          
The following BLAST results are available for this feature:
BLAST of EWM27350.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109559|gb|EWM27350.1|1.204e-177100.00protein of unknown function DUF218 [Nannochloropsi... [more]
gi|873223627|emb|CEM28362.1|1.665e-2238.59unnamed protein product [Vitrella brassicaformis C... [more]
gi|515866046|ref|WP_017296674.1|2.122e-1938.24hypothetical protein [Nodosilinea nodulosa][more]
gi|504969617|ref|WP_015156719.1|1.834e-1734.76hypothetical protein [Chroococcidiopsis thermalis]... [more]
gi|1176602504|ref|WP_082429485.1|1.852e-1734.76hypothetical protein [Pseudanabaena sp. 'Roaring C... [more]
gi|1175425116|ref|WP_081972903.1|3.613e-1736.09hypothetical protein [Leptolyngbya sp. KIOST-1][more]
gi|504977636|ref|WP_015164738.1|4.967e-1739.10hypothetical protein [Pseudanabaena sp. PCC 7367] ... [more]
gi|915593040|ref|WP_050857469.1|5.002e-1734.71hypothetical protein [Acaryochloris sp. CCMEE 5410... [more]
gi|856995385|ref|WP_048347352.1|1.577e-1641.46hypothetical protein [Synechococcus sp. WH 8020] >... [more]
gi|497312127|ref|WP_009626344.1|2.022e-1634.76DUF218 domain-containing protein [Pseudanabaena bi... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3330rna3330Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications