rna3330, rna3330 (mRNA) Nannochloropsis gaditana

Overview
Namerna3330
Unique Namerna3330
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length638
Alignment locationCM002461.1:133490..135271 -

Link to JBrowse

Properties
Property NameValue
Productprotein of unknown function DUF218
Orig transcript idgnl|cribi|Naga_100394g1.5316.mrna
Orig protein idgnl|cribi|Naga_100394g1.5316
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:133490..135271 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100394g1gene3206Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27350.1cds3321Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3330rna3330-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3330 ID=rna3330|Name=rna3330|organism=Nannochloropsis gaditana|type=mRNA|length=638bp
TCCAGACTAGTGGGATGAAAGCGATGAAGTTAGCCCTGGGGGGCGTAGGG
AGCAAAAGAGAGAAACAACAGCAACAACAACGACAGCAGCAGCAACAACA
ACAGGCACAAGCCGAACAAAGAGGGCTGTTGTCCCACCACACCCGTCAAG
AGGAACGAACCCTCCTTCCTTCCCACTCATCGCGCCCAGCTTCTGGTCAA
CATACGGAGGGAATAGAGCCATGCACGAAGCTGGAAGGGGACTCCAACCA
CCCATCTGCAGGAGAGAAGGAGGAGGTGGTGACGAAGTTGCGGGAGGACA
GGCAAGGGCCAAAAGGATCCGGAGGACCGTCGCCATCGGCCACGGCGGGC
TTCCCTCCTGGACCCCCTCCTATTCCGCTCGAGCTCACCGTGGTTTCCGA
TCTGACATTTTCAATGGATGGAGGGAGGGGCGGAGAGAGGGAGAGCGAGG
AGGGCACACGGTGTGCGAGCAGCGATGAAGAACCCTACTTCACCTTCTCC
CCCTCGCCGTCCCCGCCCGCCTGCTACGGTAAAGGGGGGGAGGGAGGGAG
GGAGCGAGGGAGGGAAGGACGGAGGGATGGAGGGAGAGGGATGGAGAAGA
GGGGCTGCAAGGTTCGGAGCGGATCGCCTCCTATCTGA
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protein sequence of rna3330

>rna3330-protein ID=rna3330-protein|Name=rna3330|organism=Nannochloropsis gaditana|type=polypeptide|length=250bp
MVASAISTYAVAPGLALVLVVILAVGRARPFSPSLHRRHPRSGSFLPRQL
QRVWTGRDDRPCHGKDTIAFRADAVLVLGGDRHRELTAVRLFMAGQLESL
HPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDR
RALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIR
VRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ
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mRNA from alignment at CM002461.1:133490..135271-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3330 ID=rna3330|Name=rna3330|organism=Nannochloropsis gaditana|type=mRNA|length=1782bp|location=Sequence derived from alignment at CM002461.1:133490..135271- (Nannochloropsis gaditana)
CGCATGGCATCAGCACGCCCAAAAAATGGCCCCGAAAAGAACAGCGAGCA
AGAATTTACGTCCCACCCGTGTGGATACCTTGACGTCAAACTACGACAAG
TGCTTGGCACTTTTTGACGAGCCATTAAGGACGTGTACGGTGAAGCTGGA
TGCAGCTGTATGGTACCAATTCAATTGCTCTTCATTTTTGATTTTAACCA
GGCATGTATTGGCAATACGATATAAGCAGCAGAAGAGAAATAAGTTAGTC
AGCGACCGACATATGCACTTCAAGTCATAATGCCCGCACGGTTCATCAAA
CTGTGGGGCCAGCGTGACAATGAGGAGATGGGATCGTGGTGGTGTGTGCG
TTGCATTGCGTAGCACTGTATTGCAACAAGTCTGGGTTGCGCTTCAATGG
GTGGCGGAAGCGGCCAATGCCGTGTAGTCAACGTGTTGCAGTCAGCTCTA
CTTGTTTCTACACGTCTCTCCCAGCCTATCCCGATCGTACTGGTGTTTCC
CGACCAAGCATGCACAAAGGGCCAACGGCATGCCCATTGTACTTAGCAAT
GTGGAGTATCACATCACGAAACGAGACAAGGAGTGATGGCCTCCCCCAAA
GACAGATGATGCAATGGAGTGGAAAGTTTATCTTCTCATTTTCCTGCTCA
CCTCCCCCCCTGCGGCAGAAAGGATGAGCTAAGGTCTCACCGCCCGGACG
AGAGCAGGGATGGTGGCATCCGCCATATCCACTTACGCAGTCGCTCCAGG
TCTTGCGTTGGTTCTTGTCGTTATCCTTGCGGTAGGCCGCGCTCGTCCTT
TTTCTCCCAGCTTGCATCGGCGGCATCCACGGAGCGGGTCCTTCCTTCCT
CGCCAGCTGCAACGGGTCTGGACGGGCCGTGACGATCGTCCCTGCCATGG
CAAAGACACCATCGCCTTCCGCGCAGATGCCGTTTTGGTTTTGGGTGGAG
ACCGCCACCGGGAATTGACGGCAGTACGTCTCTTTATGGCAGGCCAGCTC
GAGTCTCTCCACCCTCCCCCCGCACGCGCACACGCCTTTTCCCCTGCTAT
ACACCTGGACTACGACCAGATTCCTCTCTTTGTGTCGTCGGGTGCCCTCA
GCCCCGACGAATTGCCCCCTGCTACCTTGCATCCCTTCCGGCGGATCGTC
TTGGACCGGCGCGCTCTGTGCACATTGACCAATTTTACCTCGCTTCTGCC
TACCTTCCGTGCGGCAAAGATCAGGCATGTGTTGGTGGTGACCTCCCAGA
GTCATTTGTCGCGGGCCTTGACGGTGGGTAGCATCGTCCTTGGCTCCCAA
GGGATTCGGGTTCGCGGACTCGGTGTGGAGGATGGAGGGGGGGAGGAGGG
GTGGGGGAGGAGGGGGAGGGACGCGCTTCGAGCGTGGTGGTGGGTGTGGA
CCGGGTGGGAGGGAAGGGAAGTGGTGAGATGGGCGCATCCGATGAGGAAG
GAAGAGCAATGATGGATCGGGAGGGCCTTGACGGGGGGGAGGTGGCGGGA
GGGAGGGCGGGAGGGAGGGCGGGAGGGAGGGGTTCAGGGTCTGTGAAGGG
CGGGTGCGTGCGTTTGACAGGGAAACTGTGGATTAATAATGACGTCTCTG
CAAGAAGCCGCACACTTACACGCAGTGAACATGGAAAAGAAGCTGGGCGT
GATAGCATCCCAAAGAATCTCTCCTTGACTTGCCTTGTGGCTTCCCTACC
CCGAAGCCTAACGAAACGAAACGCTCGTGTCGATCGCGGAAAATAAAGAA
AACATATCACCCTCCCCGCCACTGCCACATCC
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Coding sequence (CDS) from alignment at CM002461.1:133490..135271-

>rna3330 ID=rna3330|Name=rna3330|organism=Nannochloropsis gaditana|type=CDS|length=753bp|location=Sequence derived from alignment at CM002461.1:133490..135271- (Nannochloropsis gaditana)
ATGGTGGCATCCGCCATATCCACTTACGCAGTCGCTCCAGGTCTTGCGTT
GGTTCTTGTCGTTATCCTTGCGGTAGGCCGCGCTCGTCCTTTTTCTCCCA
GCTTGCATCGGCGGCATCCACGGAGCGGGTCCTTCCTTCCTCGCCAGCTG
CAACGGGTCTGGACGGGCCGTGACGATCGTCCCTGCCATGGCAAAGACAC
CATCGCCTTCCGCGCAGATGCCGTTTTGGTTTTGGGTGGAGACCGCCACC
GGGAATTGACGGCAGTACGTCTCTTTATGGCAGGCCAGCTCGAGTCTCTC
CACCCTCCCCCCGCACGCGCACACGCCTTTTCCCCTGCTATACACCTGGA
CTACGACCAGATTCCTCTCTTTGTGTCGTCGGGTGCCCTCAGCCCCGACG
AATTGCCCCCTGCTACCTTGCATCCCTTCCGGCGGATCGTCTTGGACCGG
CGCGCTCTGTGCACATTGACCAATTTTACCTCGCTTCTGCCTACCTTCCG
TGCGGCAAAGATCAGGCATGTGTTGGTGGTGACCTCCCAGAGTCATTTGT
CGCGGGCCTTGACGGTGGGTAGCATCGTCCTTGGCTCCCAAGGGATTCGG
GTTCGCGGACTCGGTGTGGAGGATGGAGGGGGGGAGGAGGGGTGGGGGAG
GAGGGGGAGGGACGCGCTTCGAGCGTGGTGGTGGGTGTGGACCGGGTGGG
AGGGAAGGGAAGTGGTGAGATGGGCGCATCCGATGAGGAAGGAAGAGCAA
TGA
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Synonyms
Publications