EWM27350.1, cds3321 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|585109559|gb|EWM27350.1| (protein of unknown function DUF218 [Nannochloropsis gaditana]) HSP 1 Score: 496.893 bits (1278), Expect = 1.204e-177 Identity = 250/250 (100.00%), Postives = 250/250 (100.00%), Query Frame = 0
Query: 1 MVASAISTYAVAPGLALVLVVILAVGRARPFSPSLHRRHPRSGSFLPRQLQRVWTGRDDRPCHGKDTIAFRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ 250
MVASAISTYAVAPGLALVLVVILAVGRARPFSPSLHRRHPRSGSFLPRQLQRVWTGRDDRPCHGKDTIAFRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ
Sbjct: 1 MVASAISTYAVAPGLALVLVVILAVGRARPFSPSLHRRHPRSGSFLPRQLQRVWTGRDDRPCHGKDTIAFRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRKEEQ 250
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|873223627|emb|CEM28362.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 101.679 bits (252), Expect = 1.665e-22 Identity = 71/184 (38.59%), Postives = 92/184 (50.00%), Query Frame = 0
Query: 69 AFRADAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGE-----EGWGRRGRDALRAWWWVWTGWEGREVVRWAHPMRK 247
A +DA+LVLGGDR RE A+ L G L L P A + +SSGALS +++ L ++ DRRA+ T+TNF + P FR ++R V+V TS H R + V IVLGS +RV L + E GR RD LRAW WVW G + V W HP R+
Sbjct: 70 AVLSDALLVLGGDRAREAAALTLLKDGHL--LLSPSAM----------------VIISSGALSHEDITALGLST-DHVIFDRRAVDTVTNFVTTGPLFREHRVRQVMVATSDYHARRGIAVARIVLGSFRMRVVPLVIASSEKMRQERGETRGRVIRDCLRAWLWVWAGLDLSSVTVWLHPTRQ 234
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|515866046|ref|WP_017296674.1| (hypothetical protein [Nodosilinea nodulosa]) HSP 1 Score: 92.4337 bits (228), Expect = 2.122e-19 Identity = 65/170 (38.24%), Postives = 85/170 (50.00%), Query Frame = 0
Query: 73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFR----RIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREV 238
D +LVLGG HRE TA RL M LHP Q+ ++ SSG L PD P R RI LD +A+ T+TNFT+L+ TFR + H+ +VTS H+ RA + +IVLGS I + E R GRD +R+W W+ TGW G +
Sbjct: 53 DGILVLGGQPHREATAARLAM------LHP-----------------QLHIWSSSG-LGPDMAYP-IFDALRVSRDRITLDYQAVDTVTNFTTLVKTFRQQHVHHLYLVTSDYHMPRARAIATIVLGSHHIAFTPVVAPSSQATESPFRIGRDMVRSWIWLTTGWSGAAI 197
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|504969617|ref|WP_015156719.1| (hypothetical protein [Chroococcidiopsis thermalis] >gi|428011616|gb|AFY90179.1| protein of unknown function DUF218 [Chroococcidiopsis thermalis PCC 7203]) HSP 1 Score: 87.4261 bits (215), Expect = 1.834e-17 Identity = 57/164 (34.76%), Postives = 80/164 (48.78%), Query Frame = 0
Query: 73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELP-PATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEG 235
A++ LGGD RE AV + HPP + +++SS L LP P++ RI +DRRA+ T+TNFTSL+ F+ +HV ++TS H++RA + V GSQGI V + V E W RD R W W++TG G
Sbjct: 53 QAIIALGGDPRRESFAVDFALR------HPP-----------------LEIWISSPYLKAFNLPDPSSSR--SRIHIDRRAVDTVTNFTSLVAEFKQRYFQHVYLITSDFHMARAKAIAFFVFGSQGIAVTPISVPSNQQPESWFHISRDVCRTWLWMFTGRTG 191
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|1176602504|ref|WP_082429485.1| (hypothetical protein [Pseudanabaena sp. 'Roaring Creek']) HSP 1 Score: 86.2705 bits (212), Expect = 1.852e-17 Identity = 57/164 (34.76%), Postives = 82/164 (50.00%), Query Frame = 0
Query: 73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPF----RRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTG 232
A+LVLGG RE F+ L++ Q+P+FVSSG SP+E R+ LD RA+ T+TNFT ++ F+ KI V V+TS+ H+ RAL +G IVLGS+GI + + + E + RD LR+ +W+ TG
Sbjct: 21 QAILVLGGSPTRE-----------------------KFAAQFALEHPQLPIFVSSG--SPEEYAQYVFDQAGVKRDRLHLDYRAVDTVTNFTVMVTEFQQRKITDVYVITSEFHMPRALVIGKIVLGSRGIEMHPVAIPSQIKSENPTKSLRDGLRSVFWLVTG 159
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|1175425116|ref|WP_081972903.1| (hypothetical protein [Leptolyngbya sp. KIOST-1]) HSP 1 Score: 86.6557 bits (213), Expect = 3.613e-17 Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = 0
Query: 73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPP---ATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEGREV 238
D +L+LGG R RE TA RL SL P +P+++SSG L PD+ P A RI LD +A+ T+TNFT+L+ TF+ + H+ +VTS H++RA + +I+LGS I + E R GRD +R+W W+ TGW G +
Sbjct: 53 DGILILGGQRDREGTAARL------ASLRP-----------------GLPVWLSSG-LGPDQAYPIFDALGVSRDRITLDYQAVDTVTNFTTLVKTFQHQNVHHLYLVTSDYHMARARAIATIILGSHRIAFTPVVTPSTRPAESPFRIGRDMVRSWIWLATGWSGAAI 197
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|504977636|ref|WP_015164738.1| (hypothetical protein [Pseudanabaena sp. PCC 7367] >gi|427989514|gb|AFY69769.1| protein of unknown function DUF218 [Pseudanabaena sp. PCC 7367]) HSP 1 Score: 85.8853 bits (211), Expect = 4.967e-17 Identity = 52/133 (39.10%), Postives = 74/133 (55.64%), Query Frame = 0
Query: 104 PARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLH----PFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTG 232
P+R F+ LD+ Q+P++VSSG SP + P R+ LD RA+ T+TNFT+L+ F A I V V+TS H+ RA +G IVLGSQGIR+ + + +E + RD R+ +W TG
Sbjct: 46 PSREQ-FAAQFALDHPQLPIWVSSG--SPVDYAEYVFQEAGIPLDRVTLDYRAVDTVTNFTTLVDDFAANDITDVYVITSDYHMPRAKVIGKIVLGSQGIRMHPVEIPSKYNQELAVKSWRDGARSVFWTVTG 175
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|915593040|ref|WP_050857469.1| (hypothetical protein [Acaryochloris sp. CCMEE 5410]) HSP 1 Score: 85.8853 bits (211), Expect = 5.002e-17 Identity = 59/170 (34.71%), Postives = 88/170 (51.76%), Query Frame = 0
Query: 73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPFR-------RIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTGWEG 235
A+LVLGG+ RE +A ++ Q E+ HLD +++SSG P L F+ R+ LD +A T+TNFT+L+P F+ +I+H+ V+TS H+ RA + SIVLGSQGI + V +E + RD+ R+ WV+TG+ G
Sbjct: 42 QAILVLGGNPDREKSAAQI---AQFEN---------------HLD-----IWISSGTK-----PEKALSFFQALGIERSRVHLDYQATDTVTNFTTLVPKFKQRRIQHIYVITSNDHMPRAKAIASIVLGSQGITFTPVYVPTNNEQEPIYKVLRDSGRSLIWVFTGFSG 183
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|856995385|ref|WP_048347352.1| (hypothetical protein [Synechococcus sp. WH 8020] >gi|852373116|gb|AKN61330.1| hypothetical protein WB44_09770 [Synechococcus sp. WH 8020]) HSP 1 Score: 84.7297 bits (208), Expect = 1.577e-16 Identity = 68/164 (41.46%), Postives = 89/164 (54.27%), Query Frame = 0
Query: 75 VLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDE----LPPATLHPFRRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGV--EDGGGEEGWGRRGRDALRAWWWVWTG 232
+LVLGGD RE +RL A QLE +PL VS G+ +P+ + A L R+VLD RA T TNFTSL+ + +RHV +VTS+ HL RA+TVG +V GS+GIR+ G+ V + G+E G+R D LRA WV TG
Sbjct: 40 ILVLGGDLDRERVGLRL--AQQLE----------------------LPLVVSGGS-NPEYAKWLVRDAGLDQ-SRVVLDYRAKDTFTNFTSLVDDLKRDGVRHVYLVTSEDHLPRAMTVGRLVAGSRGIRLTGVPVACQPSCGKETLGKRLGDGLRALTWVVTG 177
BLAST of EWM27350.1 vs. NCBI_GenBank
Match: gi|497312127|ref|WP_009626344.1| (DUF218 domain-containing protein [Pseudanabaena biceps] >gi|443019429|gb|ELS33520.1| protein of unknown function DUF218 [Pseudanabaena biceps PCC 7429]) HSP 1 Score: 84.3445 bits (207), Expect = 2.022e-16 Identity = 57/164 (34.76%), Postives = 81/164 (49.39%), Query Frame = 0
Query: 73 DAVLVLGGDRHRELTAVRLFMAGQLESLHPPPARAHAFSPAIHLDYDQIPLFVSSGALSPDELPPATLHPF----RRIVLDRRALCTLTNFTSLLPTFRAAKIRHVLVVTSQSHLSRALTVGSIVLGSQGIRVRGLGVEDGGGEEGWGRRGRDALRAWWWVWTG 232
A+LVLGG RE F+ L++ Q+P+FVSSG SP+E RI LD RA+ T+TNFT ++ F+ KI V V+TS+ H+ RAL +G IVLGS+GI + + + E + RD LR+ +W+ G
Sbjct: 45 QAILVLGGSPTRE-----------------------RFAAQFALEHPQLPIFVSSG--SPEEYAQYVFDQAGVKRDRIHLDYRAVDTVTNFTVMVTEFQQRKITDVYVITSEFHMPRALVIGKIVLGSRGIEMHPVAIPSQIKSENPTKSLRDGLRSVFWLVMG 183 The following BLAST results are available for this feature:
BLAST of EWM27350.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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