rna3322, rna3322 (mRNA) Nannochloropsis gaditana

Overview
Namerna3322
Unique Namerna3322
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1182
Alignment locationCM002461.1:119971..120867 +

Link to JBrowse

Properties
Property NameValue
ProductPlastid lipid-associated protein/fibrillin conserved domain protein
Orig transcript idgnl|cribi|Naga_101253g1.10008.mrna
Orig protein idgnl|cribi|Naga_101253g1.10008
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:119971..120867 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101253g1gene3198Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3322rna3322-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27360.1cds3313Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3322 ID=rna3322|Name=rna3322|organism=Nannochloropsis gaditana|type=mRNA|length=1182bp
TCTTTTTCTCCCCTTGACTGCTTTGTGATTCATCCCCACTGCCCTTCAAC
CTATCTCAAGCACATTACCATGAGAACCATCTCTCCCCCCTCCACCATCC
TTCTCCCGCCCTCCCTTCCTCCCCCCCTCAGGCATGGGAGGCGCCATGGA
TTTGGTCGGAAGTGGGAATCGGGTGGTCGTCACCATGGAGCACACCGCCA
AGGGTGATAGCAAGAAGATCTTGAAGAGCTGCACGCTGCCCTTGACTGGG
CCCAAGGTGGTGGATAGGATCATAACAGAGCTCTGTGTCTTCGATGTCGA
CAAGGTTCGCGCCATTTTCCCCCACTCCCTTCACTCCCGGGGCTTCTCTG
TTGTCTTCCGTAATGCCTTCCGATCTATTTGGCTGTAATACGCGCAATTG
ATAAGGATCTTGGTCCTCCTTTTTTGTTCCTTATCCCTCGCTTTACCTAT
ACGTCTTCGATCGTTGATTTCTCTGTCTCATTCCCTCCAATATAGCCGTT
TTATTCTTTCTCCTCCGCCCCCTTCGTTCCCTCCTCGCTCACTTCCTCGT
GCGCCCTCGTTTTCGTGTCCCCGCTTCCTTCCTACATCACGCAATTTAAA
AAGTCTCTTGGCATCTACTTTAAGATCTTCGATTCATTCCTCCCCTCCCT
TCCTCTCTCTTCTCCCGTATGTCTTAGGCCAAGGGCGAATTGGTCCTGAC
GGAGATCTTTCCAGGGGTGACTGTCGACGAGATACGCGCCAAGACCGACG
CCGAGTTCAGGGAGGCGAAAGGAGGACTAAAAGTGGTCCAATTGTAAAAA
AAGGGGGAGTGGGAAATGGGGGGCTCGACTGGGGTGTCAGCTGCTGGTGG
GAGGGTAAAGAAATGGGAAGAAGCAGAGAAATTTGGGGGAGAAGTAAGGC
GGAAGAGGCAAAGGAGTGGAGACCTCGCGTAACAGGGCGACCTGTAAATG
TAGTGGAGGAAAAACCGATCGTATTTTTACAAAGAAATAAATACACAGAG
GCTTAGCGCTGATGTGTCCTAACGAAGAAGGAGCGAGAGAAAGAGAGCGC
GACATGTACAATACCTTCGGTATCGACTTCTTCGGACAAAATTAAAAGTC
AATGGGTCATTCCTGATACGAGAATGTCGATGTGACTGACAAGAACCTCT
GAAGCCAGAAGATGTTTAATCAAAACGTCCCT
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protein sequence of rna3322

>rna3322-protein ID=rna3322-protein|Name=rna3322|organism=Nannochloropsis gaditana|type=polypeptide|length=184bp
MSRLCAKPLFLLLLLPCIASAFLLPFPRASIPSRSPSVLLSSVEGADYPS
DTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQL
ANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFF
MTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKVG
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mRNA from alignment at CM002461.1:119971..120867+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3322 ID=rna3322|Name=rna3322|organism=Nannochloropsis gaditana|type=mRNA|length=897bp|location=Sequence derived from alignment at CM002461.1:119971..120867+ (Nannochloropsis gaditana)
cctttcctttgttCCACTCCGCGAGCGCCCACCATTTCAGTGCCTAACCA
CGGCTTCTATACCACACACACCGAATTTTAGGTCTTAGCATGTCACGGCT
ATGTGCAAagccgcttttcctccttttgcttCTCCCATGCATTgcttccg
ccttcctccttccatttcctcgtgcctccattccttcccgtTCACCGTCC
GTCCTGCTCTCCTCAGTGGAAGGAGCTGATTATCCCTCCGACACCGCCGA
CCCTGAACCCTCTCCGGAAGCGCGTGAAGGGAACGCCAcggtcttcccct
cctttaccGACGAGGGCAAGGTCCAGCTGCGGGAAAAATTTAAGTGCCAG
ATCTACAAGGCCGCTGCCCGGCTGAACCGCGGTCAGCTGGCGAATTTGGA
TCAACAGGTACGACTTCATGACCGAGTAGTCTTCAGCTATAGTTGAACTT
TGCCTGCAGCCCTCATACCACCTTTGTTTCGACGATGCATTGGGGTTGCG
GCATGTCGAAAATGAGGCCCCTGTGAGACTTCCTTGGTACAGGCAGTGTC
CGATTTCTCATTTCTTTTACCTCCGGCCTCTGCCctgcttgcttccttcc
cctccactcgCATcacaccttccctcctctgccacctcTGTCCGCCCTAT
CGTACTCGTCAGAACGAAATGAGCAATTTGATCGCTCAGTTGGAGGCCAT
GGGGTCCGGGCGTCCGGCCGAGaccgaggcggtggaaggggtgtgGGAGC
TGGTGTACTCGGACGTCGCCCCGTTCCgagcctctcctttcttcatgACG
GTGGGGAAGGTCATGGAAGGCACCACGCTGAGCGCGGAGGAATTCTTCCG
GCTCCACCGACTCGCGACCCGGGGGAGCGAGATTGGGAAGGTAGGGA
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Coding sequence (CDS) from alignment at CM002461.1:119971..120867+

>rna3322 ID=rna3322|Name=rna3322|organism=Nannochloropsis gaditana|type=CDS|length=1106bp|location=Sequence derived from alignment at CM002461.1:119971..120867+ (Nannochloropsis gaditana)
ATGTCACGGCTATGTGCAAagccgcttttcctccttttgcttCTCCCATG
CATTgcttccgccttcctccttccatttcctcgtgcctccattccttccc
gtTCACCGTCCGTCCTGCTCTCCTCAGTGGAAGGAGCTGATTATCCCTCC
GACACCGCCGACCCTGAACCCTCTCCGGAAGCGCGTGAAGGGAACGCCAc
ggtcttcccctcctttaccGACGAGGGCAAGGTCCAGCTGCGGGAAAAAT
TTAAGTGCCAGATCTACAAGGCCGCTGCCCGGCTGAACCGCGGTCAGCTG
GCGAATTTGGATCAACAGAACGAAATGAGCAATTTGATCGCTCAGTTGGA
GGCCATGGGGTCCGGGCGTCCGGCCGAGaccgaggcggtggaaggggtgt
gGGAGCTGGTGTACTCGGACGTCGCCCCGTTCCgagcctctcctttcttc
atgACGGTGGGGAAGGTCATGGAAGGCACCACGCTGAGCGCGGAGGAATT
CTTCCGGCTCCACCGACTCGCGACCCGGGGGAGCGAGATTGGGAAGGTAG
GGAATGTCACGGCTATGTGCAAagccgcttttcctccttttgcttCTCCC
ATGCATTgcttccgccttcctccttccatttcctcgtgcctccattcctt
cccgtTCACCGTCCGTCCTGCTCTCCTCAGTGGAAGGAGCTGATTATCCC
TCCGACACCGCCGACCCTGAACCCTCTCCGGAAGCGCGTGAAGGGAACGC
CAcggtcttcccctcctttaccGACGAGGGCAAGGTCCAGCTGCGGGAAA
AATTTAAGTGCCAGATCTACAAGGCCGCTGCCCGGCTGAACCGCGGTCAG
CTGGCGAATTTGGATCAACAGAACGAAATGAGCAATTTGATCGCTCAGTT
GGAGGCCATGGGGTCCGGGCGTCCGGCCGAGaccgaggcggtggaagggg
tgtgGGAGCTGGTGTACTCGGACGTCGCCCCGTTCCgagcctctcctttc
ttcatgACGGTGGGGAAGGTCATGGAAGGCACCACGCTGAGCGCGGAGGA
ATTCTTCCGGCTCCACCGACTCGCGACCCGGGGGAGCGAGATTGGGAAGG
TAGGGA
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Synonyms
Publications