EWM27360.1, cds3313 (CDS) Nannochloropsis gaditana

Overview
NameEWM27360.1
Unique Namecds3313
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:120060..120377 +
Alignment locationCM002461.1:120633..120867 +

Link to JBrowse

Properties
Property NameValue
End range.
End range120867
Protein idEWM27360.1
ProductPlastid lipid-associated protein/fibrillin conserved domain protein
Partialtrue
Orig transcript idgnl|cribi|Naga_101253g1.10008.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:120060..120377 +
CM002461.1supercontigCM002461.1:120633..120867 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR006843PAP/fibrillin_dom
Homology
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|585109576|gb|EWM27360.1| (Plastid lipid-associated protein/fibrillin conserved domain protein, partial [Nannochloropsis gaditana])

HSP 1 Score: 374.785 bits (961), Expect = 1.995e-131
Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query:    1 MSRLCAKPLFLLLLLPCIASAFLLPFPRASIPSRSPSVLLSSVEGADYPSDTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKVG 184
            MSRLCAKPLFLLLLLPCIASAFLLPFPRASIPSRSPSVLLSSVEGADYPSDTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKVG
Sbjct:    1 MSRLCAKPLFLLLLLPCIASAFLLPFPRASIPSRSPSVLLSSVEGADYPSDTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKVG 184          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|299473476|emb|CBN77872.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 97.4413 bits (241), Expect = 7.473e-22
Identity = 54/145 (37.24%), Postives = 76/145 (52.41%), Query Frame = 0
Query:   40 LSSVEGADYPSDTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPA-ETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKV 183
            + S E  D+PSD  D           ++  P+   +   +LRE  K ++   AA  NRGQ+A  ++++   +LI QLE++     A     + G WELVY+D  PFR SPFFM +G+V       AE  F LHR AT   EIG+V
Sbjct:    1 MMSFEAGDFPSDVGDA--------AGSSAVPAVLADDNPELRETMKREVLSIAATSNRGQVATQEEKDAAMDLIFQLESLNPTPDATNVNTIGGAWELVYTDTQPFRCSPFFMALGEVFGEKKGQAETLFSLHRAATSNGEIGRV 137          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|873241246|emb|CEL92680.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 88.5817 bits (218), Expect = 8.309e-18
Identity = 68/199 (34.17%), Postives = 102/199 (51.26%), Query Frame = 0
Query:   11 LLLLLPCIASAFLLPF-PRAS-------------IPSRSPS-----VLLSSVEGADYPS--DTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAM---GSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTL--SAEEFFRLHRLATRGSEIGKV 183
            L LL   + SAF+LP  P +S             + SR+       VL ++VE   +PS  D +D + +   RE   T+  +  DE         K +++  AAR +RGQLA   ++  ++++ + L AM   G+G+      ++G WEL+Y DV  FR SPF+MT+ ++    T    AE  F LHRL TR SEIG+V
Sbjct:   10 LFLLSSILTSAFILPARPSSSFGPQGTRHSTTRTLSSRADDAIASPVLTTTVEDT-FPSEIDISDDDAANNNREAAVTLDKTQVDE--------LKRELFLIAARTSRGQLAKPYEKEMVNDICSSLAAMAADGNGKEGGDANIDGTWELLYGDVQLFRQSPFWMTLRRLFGSATALPQAESLFDLHRLQTRVSEIGRV 199          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|397627960|gb|EJK68684.1| (hypothetical protein THAOC_10115 [Thalassiosira oceanica])

HSP 1 Score: 73.559 bits (179), Expect = 3.889e-12
Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0
Query:   74 DEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVM-EGTTLSAEEFFRLHRLATRGSEIGKV 183
            +E    +R++ K ++   A+  NRGQ A L++QN + +L+ QLEA+  +  PA     +G WEL YS    FR+SPFF+ +   + +     AE  F +H +AT  S +GKV
Sbjct:   66 NESDSIIRDELKRELILLASTTNRGQCATLEEQNLVIDLVTQLEALNPTADPALNS--QGDWELCYSSTQSFRSSPFFLAIRAFLGDDNKEVAENAFSIHDMATTASRVGKV 175          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|223994017|ref|XP_002286692.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978007|gb|EED96333.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 72.7886 bits (177), Expect = 4.699e-12
Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 0
Query:   74 DEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVM-EGTTLSAEEFFRLHRLATRGSEIGKV 183
            DE    +R++ K ++   ++  NRGQ A+ +++N + +L+ QLEA+  +  PA     +G WEL YS    FR+SPFF+ +   M E     AE  F +H  AT  S +GKV
Sbjct:   76 DEDDAIIRDELKRELLLLSSVTNRGQCASQEEENLVVDLVTQLEALNPTADPALNS--QGDWELCYSSTQSFRSSPFFLAIRSFMGESNKSMAENAFDIHDRATTASRVGKV 185          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|922854890|gb|KOO23389.1| (hypothetical protein Ctob_005644 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 67.781 bits (164), Expect = 3.600e-10
Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 0
Query:   77 KVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEG-TTLSAEEFFRLHRLATRGSEIGKV 183
            + +LR   K  + +  A   RGQ  +  +  +    +AQLE++G   PA    + G W+LV +DV PFRASPF+  +G  ++     +A+  F  HRLAT   E+G+V
Sbjct:   26 RAKLRVDLKAALVRLGASSGRGQFFSTAECAKACEYVAQLESVG--LPALPSDLTGTWDLVLTDVEPFRASPFWWALGSALDAFKPGAAKRIFPAHRLATSVGEVGRV 131          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|219110299|ref|XP_002176901.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411436|gb|EEC51364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 65.855 bits (159), Expect = 1.356e-9
Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 0
Query:   74 DEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVM-EGTTLSAEEFFRLHRLATRGSEIGKV 183
            +E    +R+  K ++   ++  NRG+ A+ D+QN + +++AQLEA+  +  PA     +G W+L  S    FR+SPFF ++   M E     AE  F +H  AT  S +G+V
Sbjct:   73 NEADSIIRDDLKRELLLLSSVTNRGEYASPDEQNIIVDIVAQLEALNPTADPASN--CQGEWDLALSSTQFFRSSPFFQSIRVAMGENNKAMAENAFDIHDRATTASRVGRV 182          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|612399392|ref|XP_007515215.1| (predicted protein [Bathycoccus prasinos] >gi|412993583|emb|CCO14094.1| predicted protein [Bathycoccus prasinos])

HSP 1 Score: 65.4698 bits (158), Expect = 1.973e-9
Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 0
Query:   83 KFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATR--GSEIGKV 183
            + K  IY  AA  +RG  A+ D++ +M   I++L  +  +  PA +E + G WELVY+D   FRASPFF  +GK +     +A  F+  H   T   G  +G+V
Sbjct:   79 QLKSNIYALAATTSRGAEASADEKEKMQKKISELNRLNPTPMPARSELINGRWELVYTDTYAFRASPFFWQLGKAL---NENANLFYDAHAHQTSLFGGGVGRV 179          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|1072231060|gb|OEU15793.1| (hypothetical protein FRACYDRAFT_240488 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 65.855 bits (159), Expect = 2.007e-9
Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query:   88 IYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEE---FFRLHRLATRGSEIGKV 183
            + + AA   RG+ A+ DQ+N  S LIA LE    + +PA+   + G WELVYS    FR+SPFFM  G+ +  TT  AE+   F  +HR A   S IG V
Sbjct:   85 LLRIAASTGRGEYASPDQKNLASELIAALEKTNPTPQPAKDPKIYGRWELVYSSTELFRSSPFFM-AGRAVCSTTDQAEQYDWFCDMHRKALAISNIGSV 183          
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|740867696|ref|WP_038652947.1| (pilus assembly protein [Prochlorococcus sp. MIT 0801] >gi|689270410|gb|AIQ97303.1| putative Gram-negative pili assembly chaperone [Prochlorococcus sp. MIT 0801])

HSP 1 Score: 64.3142 bits (155), Expect = 3.631e-9
Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 0
Query:   81 REKFKCQIYKAAARLNRGQLANL-------DQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRG---SEIGKVG 184
            R+  K  IY+ AA  +RGQ  N        ++  EM  L+  L+ +         ++EG WEL+YS V  FR+SPFF+ + K ++  +  ++ FF+LH L       S +G+VG
Sbjct:    4 RKDLKALIYQVAAATDRGQRMNAMIAPMYQNKLEEMKKLVEDLQPLSD--EITQSSIEGEWELIYSSVELFRSSPFFLAIEKALDDKS-KSDLFFKLHLLQVGSFGLSTVGRVG 114          
The following BLAST results are available for this feature:
BLAST of EWM27360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109576|gb|EWM27360.1|1.995e-131100.00Plastid lipid-associated protein/fibrillin conserv... [more]
gi|299473476|emb|CBN77872.1|7.473e-2237.24conserved unknown protein [Ectocarpus siliculosus][more]
gi|873241246|emb|CEL92680.1|8.309e-1834.17unnamed protein product [Vitrella brassicaformis C... [more]
gi|397627960|gb|EJK68684.1|3.889e-1236.61hypothetical protein THAOC_10115 [Thalassiosira oc... [more]
gi|223994017|ref|XP_002286692.1|4.699e-1236.61predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|922854890|gb|KOO23389.1|3.600e-1035.19hypothetical protein Ctob_005644 [Chrysochromulina... [more]
gi|219110299|ref|XP_002176901.1|1.356e-933.93predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|612399392|ref|XP_007515215.1|1.973e-936.54predicted protein [Bathycoccus prasinos] >gi|41299... [more]
gi|1072231060|gb|OEU15793.1|2.007e-943.00hypothetical protein FRACYDRAFT_240488 [Fragilario... [more]
gi|740867696|ref|WP_038652947.1|3.631e-933.33pilus assembly protein [Prochlorococcus sp. MIT 08... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3322rna3322Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications