EWM27360.1, cds3313 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|585109576|gb|EWM27360.1| (Plastid lipid-associated protein/fibrillin conserved domain protein, partial [Nannochloropsis gaditana]) HSP 1 Score: 374.785 bits (961), Expect = 1.995e-131 Identity = 184/184 (100.00%), Postives = 184/184 (100.00%), Query Frame = 0
Query: 1 MSRLCAKPLFLLLLLPCIASAFLLPFPRASIPSRSPSVLLSSVEGADYPSDTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKVG 184
MSRLCAKPLFLLLLLPCIASAFLLPFPRASIPSRSPSVLLSSVEGADYPSDTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKVG
Sbjct: 1 MSRLCAKPLFLLLLLPCIASAFLLPFPRASIPSRSPSVLLSSVEGADYPSDTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKVG 184
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|299473476|emb|CBN77872.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 97.4413 bits (241), Expect = 7.473e-22 Identity = 54/145 (37.24%), Postives = 76/145 (52.41%), Query Frame = 0
Query: 40 LSSVEGADYPSDTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPA-ETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRGSEIGKV 183
+ S E D+PSD D ++ P+ + +LRE K ++ AA NRGQ+A ++++ +LI QLE++ A + G WELVY+D PFR SPFFM +G+V AE F LHR AT EIG+V
Sbjct: 1 MMSFEAGDFPSDVGDA--------AGSSAVPAVLADDNPELRETMKREVLSIAATSNRGQVATQEEKDAAMDLIFQLESLNPTPDATNVNTIGGAWELVYTDTQPFRCSPFFMALGEVFGEKKGQAETLFSLHRAATSNGEIGRV 137
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|873241246|emb|CEL92680.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 88.5817 bits (218), Expect = 8.309e-18 Identity = 68/199 (34.17%), Postives = 102/199 (51.26%), Query Frame = 0
Query: 11 LLLLLPCIASAFLLPF-PRAS-------------IPSRSPS-----VLLSSVEGADYPS--DTADPEPSPEAREGNATVFPSFTDEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAM---GSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTL--SAEEFFRLHRLATRGSEIGKV 183
L LL + SAF+LP P +S + SR+ VL ++VE +PS D +D + + RE T+ + DE K +++ AAR +RGQLA ++ ++++ + L AM G+G+ ++G WEL+Y DV FR SPF+MT+ ++ T AE F LHRL TR SEIG+V
Sbjct: 10 LFLLSSILTSAFILPARPSSSFGPQGTRHSTTRTLSSRADDAIASPVLTTTVEDT-FPSEIDISDDDAANNNREAAVTLDKTQVDE--------LKRELFLIAARTSRGQLAKPYEKEMVNDICSSLAAMAADGNGKEGGDANIDGTWELLYGDVQLFRQSPFWMTLRRLFGSATALPQAESLFDLHRLQTRVSEIGRV 199
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|397627960|gb|EJK68684.1| (hypothetical protein THAOC_10115 [Thalassiosira oceanica]) HSP 1 Score: 73.559 bits (179), Expect = 3.889e-12 Identity = 41/112 (36.61%), Postives = 64/112 (57.14%), Query Frame = 0
Query: 74 DEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVM-EGTTLSAEEFFRLHRLATRGSEIGKV 183
+E +R++ K ++ A+ NRGQ A L++QN + +L+ QLEA+ + PA +G WEL YS FR+SPFF+ + + + AE F +H +AT S +GKV
Sbjct: 66 NESDSIIRDELKRELILLASTTNRGQCATLEEQNLVIDLVTQLEALNPTADPALNS--QGDWELCYSSTQSFRSSPFFLAIRAFLGDDNKEVAENAFSIHDMATTASRVGKV 175
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|223994017|ref|XP_002286692.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220978007|gb|EED96333.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 72.7886 bits (177), Expect = 4.699e-12 Identity = 41/112 (36.61%), Postives = 63/112 (56.25%), Query Frame = 0
Query: 74 DEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVM-EGTTLSAEEFFRLHRLATRGSEIGKV 183
DE +R++ K ++ ++ NRGQ A+ +++N + +L+ QLEA+ + PA +G WEL YS FR+SPFF+ + M E AE F +H AT S +GKV
Sbjct: 76 DEDDAIIRDELKRELLLLSSVTNRGQCASQEEENLVVDLVTQLEALNPTADPALNS--QGDWELCYSSTQSFRSSPFFLAIRSFMGESNKSMAENAFDIHDRATTASRVGKV 185
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|922854890|gb|KOO23389.1| (hypothetical protein Ctob_005644 [Chrysochromulina sp. CCMP291]) HSP 1 Score: 67.781 bits (164), Expect = 3.600e-10 Identity = 38/108 (35.19%), Postives = 59/108 (54.63%), Query Frame = 0
Query: 77 KVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEG-TTLSAEEFFRLHRLATRGSEIGKV 183
+ +LR K + + A RGQ + + + +AQLE++G PA + G W+LV +DV PFRASPF+ +G ++ +A+ F HRLAT E+G+V
Sbjct: 26 RAKLRVDLKAALVRLGASSGRGQFFSTAECAKACEYVAQLESVG--LPALPSDLTGTWDLVLTDVEPFRASPFWWALGSALDAFKPGAAKRIFPAHRLATSVGEVGRV 131
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|219110299|ref|XP_002176901.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217411436|gb|EEC51364.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 65.855 bits (159), Expect = 1.356e-9 Identity = 38/112 (33.93%), Postives = 62/112 (55.36%), Query Frame = 0
Query: 74 DEGKVQLREKFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVM-EGTTLSAEEFFRLHRLATRGSEIGKV 183
+E +R+ K ++ ++ NRG+ A+ D+QN + +++AQLEA+ + PA +G W+L S FR+SPFF ++ M E AE F +H AT S +G+V
Sbjct: 73 NEADSIIRDDLKRELLLLSSVTNRGEYASPDEQNIIVDIVAQLEALNPTADPASN--CQGEWDLALSSTQFFRSSPFFQSIRVAMGENNKAMAENAFDIHDRATTASRVGRV 182
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|612399392|ref|XP_007515215.1| (predicted protein [Bathycoccus prasinos] >gi|412993583|emb|CCO14094.1| predicted protein [Bathycoccus prasinos]) HSP 1 Score: 65.4698 bits (158), Expect = 1.973e-9 Identity = 38/104 (36.54%), Postives = 57/104 (54.81%), Query Frame = 0
Query: 83 KFKCQIYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATR--GSEIGKV 183
+ K IY AA +RG A+ D++ +M I++L + + PA +E + G WELVY+D FRASPFF +GK + +A F+ H T G +G+V
Sbjct: 79 QLKSNIYALAATTSRGAEASADEKEKMQKKISELNRLNPTPMPARSELINGRWELVYTDTYAFRASPFFWQLGKAL---NENANLFYDAHAHQTSLFGGGVGRV 179
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|1072231060|gb|OEU15793.1| (hypothetical protein FRACYDRAFT_240488 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 65.855 bits (159), Expect = 2.007e-9 Identity = 43/100 (43.00%), Postives = 57/100 (57.00%), Query Frame = 0
Query: 88 IYKAAARLNRGQLANLDQQNEMSNLIAQLEAMG-SGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEE---FFRLHRLATRGSEIGKV 183
+ + AA RG+ A+ DQ+N S LIA LE + +PA+ + G WELVYS FR+SPFFM G+ + TT AE+ F +HR A S IG V
Sbjct: 85 LLRIAASTGRGEYASPDQKNLASELIAALEKTNPTPQPAKDPKIYGRWELVYSSTELFRSSPFFM-AGRAVCSTTDQAEQYDWFCDMHRKALAISNIGSV 183
BLAST of EWM27360.1 vs. NCBI_GenBank
Match: gi|740867696|ref|WP_038652947.1| (pilus assembly protein [Prochlorococcus sp. MIT 0801] >gi|689270410|gb|AIQ97303.1| putative Gram-negative pili assembly chaperone [Prochlorococcus sp. MIT 0801]) HSP 1 Score: 64.3142 bits (155), Expect = 3.631e-9 Identity = 38/114 (33.33%), Postives = 60/114 (52.63%), Query Frame = 0
Query: 81 REKFKCQIYKAAARLNRGQLANL-------DQQNEMSNLIAQLEAMGSGRPAETEAVEGVWELVYSDVAPFRASPFFMTVGKVMEGTTLSAEEFFRLHRLATRG---SEIGKVG 184
R+ K IY+ AA +RGQ N ++ EM L+ L+ + ++EG WEL+YS V FR+SPFF+ + K ++ + ++ FF+LH L S +G+VG
Sbjct: 4 RKDLKALIYQVAAATDRGQRMNAMIAPMYQNKLEEMKKLVEDLQPLSD--EITQSSIEGEWELIYSSVELFRSSPFFLAIEKALDDKS-KSDLFFKLHLLQVGSFGLSTVGRVG 114 The following BLAST results are available for this feature:
BLAST of EWM27360.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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