EWM27366.1, cds3306 (CDS) Nannochloropsis gaditana

Overview
NameEWM27366.1
Unique Namecds3306
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002461.1:100627..101007 +

Link to JBrowse

Properties
Property NameValue
Start range100627
Start range.
Protein idEWM27366.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100520g2.9253.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:100627..101007 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27366.1 vs. NCBI_GenBank
Match: gi|585109584|gb|EWM27366.1| (hypothetical protein Naga_100520g2, partial [Nannochloropsis gaditana])

HSP 1 Score: 248.825 bits (634), Expect = 1.516e-83
Identity = 126/126 (100.00%), Postives = 126/126 (100.00%), Query Frame = 0
Query:    1 REGQRVRRAGKEVVDRALKLSFGSLSPAPSSRPALTSHPPLSPPPQGAGGFAADTLLFSLDLKGEGFKSALSASASAPSPRGWYGHCVTRTEGYVVVGGLAPDNSRLGDVWILEEEGVEGGREGEL 126
            REGQRVRRAGKEVVDRALKLSFGSLSPAPSSRPALTSHPPLSPPPQGAGGFAADTLLFSLDLKGEGFKSALSASASAPSPRGWYGHCVTRTEGYVVVGGLAPDNSRLGDVWILEEEGVEGGREGEL
Sbjct:    1 REGQRVRRAGKEVVDRALKLSFGSLSPAPSSRPALTSHPPLSPPPQGAGGFAADTLLFSLDLKGEGFKSALSASASAPSPRGWYGHCVTRTEGYVVVGGLAPDNSRLGDVWILEEEGVEGGREGEL 126          
BLAST of EWM27366.1 vs. NCBI_GenBank
Match: gi|682358129|gb|KFY47239.1| (hypothetical protein V495_02045 [Pseudogymnoascus sp. VKM F-4514 (FW-929)] >gi|682383153|gb|KFY65641.1| hypothetical protein V497_01334 [Pseudogymnoascus sp. VKM F-4516 (FW-969)])

HSP 1 Score: 58.151 bits (139), Expect = 1.974e-7
Identity = 36/81 (44.44%), Postives = 47/81 (58.02%), Query Frame = 0
Query:   38 HPPLSPPPQGAGGFAADTLLFSLDLKGEGFKSALSASASAPSPRGWYGHCVTR----TEGYVVVGGLAPDNSRLGDVWILE 114
            H P S    GAG    +  +++ D+ G G+ + L A  +AP PRGW+   V +     E  VV GGLA DNSRLGDVWI+E
Sbjct:  257 HDPSSLGHSGAGKMLGN--VWAYDITGGGW-TELKADGNAPQPRGWFDADVAKDAKGKEVIVVHGGLAEDNSRLGDVWIME 334          
BLAST of EWM27366.1 vs. NCBI_GenBank
Match: gi|682279685|gb|KFY01173.1| (hypothetical protein V490_01042 [Pseudogymnoascus sp. VKM F-3557])

HSP 1 Score: 57.3806 bits (137), Expect = 3.481e-7
Identity = 36/81 (44.44%), Postives = 46/81 (56.79%), Query Frame = 0
Query:   38 HPPLSPPPQGAGGFAADTLLFSLDLKGEGFKSALSASASAPSPRGWYGHCVTR----TEGYVVVGGLAPDNSRLGDVWILE 114
            H P S    GAG    +  +++ D+ G G  + L A  +AP PRGW+   V +     E  VV GGLA DNSRLGDVWI+E
Sbjct:  257 HDPSSLGHSGAGKMLGN--VWAYDITG-GVWTELKADGNAPQPRGWFDADVAKDAKGKEVIVVHGGLAEDNSRLGDVWIME 334          
BLAST of EWM27366.1 vs. NCBI_GenBank
Match: gi|1022801024|ref|XP_016213241.1| (hypothetical protein PV09_05580 [Verruconis gallopava] >gi|759226385|gb|KIW03372.1| hypothetical protein PV09_05580 [Verruconis gallopava])

HSP 1 Score: 56.9954 bits (136), Expect = 5.465e-7
Identity = 35/80 (43.75%), Postives = 44/80 (55.00%), Query Frame = 0
Query:   34 ALTSHPPLSPPPQGAGGFAADTLLFSLDLK-GEGFKSALSASASAPSPRGWYGHCVTRTEGYVVVGGLAPDNSRLGDVWI 112
            A     P S   QGAG   +D  +++ D+K  + FK        AP PRGW+   V  T+  VV GGLA DNSRLGDVW+
Sbjct:  254 AFGERDPSSLGHQGAGKMLSD--VWAYDIKEHQWFKVEAEGGDEAPEPRGWFAADVLGTDTIVVHGGLAEDNSRLGDVWL 331          
The following BLAST results are available for this feature:
BLAST of EWM27366.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585109584|gb|EWM27366.1|1.516e-83100.00hypothetical protein Naga_100520g2, partial [Nanno... [more]
gi|682358129|gb|KFY47239.1|1.974e-744.44hypothetical protein V495_02045 [Pseudogymnoascus ... [more]
gi|682279685|gb|KFY01173.1|3.481e-744.44hypothetical protein V490_01042 [Pseudogymnoascus ... [more]
gi|1022801024|ref|XP_016213241.1|5.465e-743.75hypothetical protein PV09_05580 [Verruconis gallop... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3315rna3315Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications