rna3315, rna3315 (mRNA) Nannochloropsis gaditana

Overview
Namerna3315
Unique Namerna3315
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1350
Alignment locationCM002461.1:100627..101386 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100520g2.9253.mrna
Orig protein idgnl|cribi|Naga_100520g2.9253
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002461.1supercontigCM002461.1:100627..101386 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100520g2gene3191Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3315rna3315-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27366.1cds3306Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3315 ID=rna3315|Name=rna3315|organism=Nannochloropsis gaditana|type=mRNA|length=1350bp
ATGGGGCCGTCTCAATGGCCTTCCTCTGGTAGTTATGCCTTTTCTTTACT
GGCCCTCCTCTCTTCCCCGCGGCCGTCTCACACCCACTTCCTTCCGCCCC
GAGTCGCCACCCTCCAGTCTCCCCTTCCCCCCCTCTGTCTCCCGCCTCTG
AGCCGCTTCCGTTTCCTCCCACGTCCACCACAGGCGTCGCCCTCCGCCTT
GGCGGACGAGCTGGTTACTCATTTGAACGTCCCGTTGGAAGCAAAGCAAC
GGCTGTTGGAGGAACCTCGTCTGGAGGCCAGGTTGCGAGGGGCACTGGAA
CTGATCCGGGAGCAGGTGGAGATCATCAAGCTCAGCAGCAAGATCTCGAA
CGAGGTGGAGGACCGGCTTTCTACCCGGCAAAGGGAGTACTACCTGCGGC
AGCAGCTCAAGACCATCAAGGAGCAACTGGGCGAGGAAGAGGATGGGAGC
GAGGAGGACGACATGACGGAGCTGGCCAATCGCCTCAAAGCCAAGCCCCT
GCCCCGAGAGGTTCGCGTAGCCGCTGAGAAGGAGCTGCGGCGCTTGAAGC
GGATGCAGCCCTCCCAGCCTGAACACAGCGTCGTCCGCACGTATCTCGAA
TGGATTTTGGACCTTCCTTGGTTTTTGAAAGATGACGAGAACGAAGCGGG
CGACACCGACGCACAAGTGCCGTCGAACGTGGAAGAAGCGTTTTTCGATG
TGAGGGCAGTTGAGGCACAACTCGACCGTGACCACCACGGCCTTGGGAAG
GTCAAGCGTCGCATCTTGGAGTACATTGCCGTGCGCTCGCTCACACGCTC
TCTGAAAGGGCCCATCCTCTGCTTGGTCGGCCCACCGGGAGTGGGGAAGA
CGTCTCTGGGTCGCTCCATTGCCACCGCCCTCGGTCGTCGGTTCCAGCGT
CTTTCCCTTGGCGGCGTCCACGACGAGGCAGAGATTCGCGGGCACAGGAG
GACCTACATCGGCGCCTTACCGGGAAATATCTTGCAGTGTATGAAAAAAG
CAGGAACGCCGGATCCTCTATTTCTTTTGGACGAAGTTGACAAATTGGGG
TCGTCGATCCGAGGAGGGGATCCCTCTGCCGCCATGTTGGAGGTTTTGGA
CCCCGAGCAGAACAGCACCTTCACAGATCACTACTTGAACCTACCTTATG
ATCTCTCCCGCGTCTTTTTTCTTGCCACGGCCAACCAAACGGACACCATC
CCCGAGCCCCTCTTGGACCGTATGGAGGTCATCAATCTCCCAGGCTACAC
AATCGAGGAGAAGGTTTTTATTGCAGAGCAGTACCTCATCCCGAAGCAGC
TGGCAGCGAACGGTCTAAGTCCCGAGCACGTAATCGTCACTCCTCGGTAG
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protein sequence of rna3315

>rna3315-protein ID=rna3315-protein|Name=rna3315|organism=Nannochloropsis gaditana|type=polypeptide|length=126bp
REGQRVRRAGKEVVDRALKLSFGSLSPAPSSRPALTSHPPLSPPPQGAGG
FAADTLLFSLDLKGEGFKSALSASASAPSPRGWYGHCVTRTEGYVVVGGL
APDNSRLGDVWILEEEGVEGGREGEL
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mRNA from alignment at CM002461.1:100627..101386+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3315 ID=rna3315|Name=rna3315|organism=Nannochloropsis gaditana|type=mRNA|length=760bp|location=Sequence derived from alignment at CM002461.1:100627..101386+ (Nannochloropsis gaditana)
agggaaggacagagggtgagaagggcaggaaaggaagtaGTTGATAGAGC
ACTGAAACTTTCTTTTgggtccctctcccccgccccctcctcgcgcccAG
CCCTCAcctctcaccctcccctttccccccctccgcagGGCGCTGGGGGT
TTTGCGGCCgacaccctcctcttctccctggACCTCAAAGGGGAAGGGTT
CAAGTCCGCTCTCTCTGCCTCTGCGtccgccccctcgcctcggGGATGGT
ACGGGCACTGTGTGACTCGGACGGAGGGGTACGTGGTCGTGGGGGGACTA
GCCCCGGATAATTCCAGGCTGGGTGATGTGTGGatattggaggaggaagg
agtggaaggagggcgcgagggcgAGCTTTAAGATAGGAGGAAGCGATTCA
CTTTGGATAAGGAGGGACGAGAGTCATCGTTGGAGGGTTGGTTCGTGCCC
GTTCAGAATGGAAGGTGTCGGGGTTTtgcaggggggaagagaagctgAGG
GGGAATGAGGATGTCTTTCAGCGAAATAACAAATAAGTGGGTGGAGGTCT
GAAGGCTGGGTGCTCAGTACTCTCTCACTCAGAATTTTTTATGAATAACT
AAGGAAACCGCATTGAAGATTGATAAGACGACGATTCAGGAAGCGTGATG
TTTGGACGTGATGGATAAAAAGAAAAGTGCGCATGTGATTTTTAACGTGA
GAAAACAACCATAAATCTACTTTTCGTTCAAAGAAAAGAATCGGAGCAAC
AATAAGATGA
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Coding sequence (CDS) from alignment at CM002461.1:100627..101386+

>rna3315 ID=rna3315|Name=rna3315|organism=Nannochloropsis gaditana|type=CDS|length=381bp|location=Sequence derived from alignment at CM002461.1:100627..101386+ (Nannochloropsis gaditana)
agggaaggacagagggtgagaagggcaggaaaggaagtaGTTGATAGAGC
ACTGAAACTTTCTTTTgggtccctctcccccgccccctcctcgcgcccAG
CCCTCAcctctcaccctcccctttccccccctccgcagGGCGCTGGGGGT
TTTGCGGCCgacaccctcctcttctccctggACCTCAAAGGGGAAGGGTT
CAAGTCCGCTCTCTCTGCCTCTGCGtccgccccctcgcctcggGGATGGT
ACGGGCACTGTGTGACTCGGACGGAGGGGTACGTGGTCGTGGGGGGACTA
GCCCCGGATAATTCCAGGCTGGGTGATGTGTGGatattggaggaggaagg
agtggaaggagggcgcgagggcgAGCTTTAA
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Synonyms
Publications