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Properties
| Property Name | Value |
|---|
| Product | short chain dehydrogenase reductase |
| Orig transcript id | gnl|cribi|Naga_100212g8.2167.mrna |
| Orig protein id | gnl|cribi|Naga_100212g8.2167 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:1214071..1215587 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna3278 ID=rna3278|Name=rna3278|organism=Nannochloropsis gaditana|type=mRNA|length=1640bp
TCTGCAGTGATAAAGAAGAGATAAATAAAACAGGGAAATTCTACCAAACA
GGAAACAGAAGGCTGGTATGGTTTGGCACGGCATCCATTTGTCAGCCATC
GCCAAACAGCTGCCAGCAATTCGCGGTTATTTACAAGAAGACGTTCGACT
GATCGATTTGCAGGATGATACCTATGGGATGTCTCCTCTTATTTGGAGTT
GCGTCATGGGCCATGATGATGTTGCCGCTTGGCTGCTCGCCCGCGGGGCT
TCAGTAGATCTCGTAGACTCCGGGGGGCGATCTGCATTGTTTTACGCCAG
CAAAATTGGATACCTGGACCTCGTCTCGGTGCTCCTTAAACACAATCCAG
ACGTCCGTAAACAGAGCACAGAAGGGATGACACCTCTCATCATCGCCTGC
GCATGCGGACATACAGACGTGGTGAAGGCTCTCATTGACCACGCCTGTTC
ACTGGCCCCCCTTTCCTCCAAGAGTAACGCCTGCTTCTCTTCCTCCCATT
CTTCCTTCGCTTCCACTACCGTCACGGCTACCAGCAGAGCGGCTGCCTCC
TCCCTCTCGTCTTCATCCGTCCAGCCCCCTGCTATCAAAGAATACTTAGA
CCTTGTCACGCGGAGGGGGAACAGCGCTGTGCATTGCGCCTCCCGTTTCC
CTCAGATCCTAAAGATTCTGCTCCAGAAAGGAGCAAATCCAACCCTAGTT
AACCGGGAGGGCCACACAGCCCTGGAAATCGCCATGGCCAAGAACGTTCC
TGCTTCCGTTCGCGTCCTTAAGAAATATCTGCAGGAGAAGGAGTCGCGGC
GGGCGCGATGTCTTTACAAGGCGCGTGCCATCTGCGACGCCTCCCACGCC
CTCCGACACACGTATATGACGGGCAAGACCCGTGCTGAGAAGCGTCGTAA
GTGTCTTAGCGTGACTCCTGGCTACTTGGAGGAGAGGATCGCGCGGGAGG
CTCCTTTGCCGCTTTTGCTCGCTGGGTCCAGGGGAGAAAACGAGAAGTCG
GAGAGAGAGAACGGACGTGGAAGGGGGCTCAGTCGAGTGGTATGGGCGAA
TAGGAAAAGGTCTTTCGAGAGGCAAGAGGAGGGCGAGGAACCCGTGAAGG
CGTTACACGCGCAGACCGCGCGGTGTCCGTCAGTCCAAGACCCGCGCACG
CAGGTAGGTCATCCTTCCATAGGGCCACTAGACCACCTCCCCTTTCCTTG
TTACCACCGCTTTCTGGATGTCGGAAATATATTTGTGGCAGGCCTTTGAT
GTCCACGCACTTGTCTCCATATTTTCCCCAAGGTGCGCGAGGCTGTTTTC
TGGCACGCGGTGGGGGGAGGGCTGAAAAGGGAGCTTTTCGTCGAACTTAT
GGATATGATGCTGCCCAAGTGGGACCCTGAGCGAGTTCGCTAGGAGAAAA
TTGAATCGCTGGATTGACAGCGGGCGAAGGAGGCCGAAGAGGGAAGATTG
TAGGATTTATCTGTAGATAACAATACTGTACCATCTTTCTTGTGTATAAG
AAGCGTGCAAAGCTGTCCGAGCACCAAATAAAGTGGGTGATCGTGGTGAA
TGTGGACAAGGCACATAAAATGTCTCTAAAGGAGTAAGAATGTGCAGTTG
AAATCTGAAGAAAGCTTTCAAAACTATATCCATATATATT back to topprotein sequence of rna3278 >rna3278-protein ID=rna3278-protein|Name=rna3278|organism=Nannochloropsis gaditana|type=polypeptide|length=281bp
MDAPSLSTSSLSPSLSVDKLFDVRDKNVLITGGGTGIGRMIAQGFVDNGA
RVFIASRKEATQAAAEIVRASSRPPSRVFCRGLTADLSKGESEQMNLLSA
VARETAGKLHVLVNNAGTNWAEPVESYPIKAFEKVVALNLLAAFSLTRLA
LPLLEATATLGNPARVINIGSIDGARVTLIDHFAYSSSKAALHQLSKVLA
GKLGHRHITVNTLAPGPFASKMMKVTLARAQEEIEAGTALGRIGSPEDMA
GAALFLASRAGAYVTGAVLVVDGGILVKPRL back to topmRNA from alignment at CM002460.1:1214071..1215587- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna3278 ID=rna3278|Name=rna3278|organism=Nannochloropsis gaditana|type=mRNA|length=1517bp|location=Sequence derived from alignment at CM002460.1:1214071..1215587- (Nannochloropsis gaditana)
ATGGACGCTCCCAGTCTGTCTACCTCCTCCCTCTCGCCCTCACTTTCTGT
TGATAAACTTTTCGACGTACGAGACAAAAACGTTTTAATTACTGGAGGTG
GGACGGGCATCGGCCGAATGATAGCTCAAGGCTTTGTGGATAACGGTAAA
TTTTGTCGAGCACAGTGACAATTTCTCTGGAAAGCTGGAAGTAGCGATTC
ACTCCTCACTCATACGCTCTGCACGTTGTGCCTGTCCTGCTGGGCATACC
TCATCTTAAAGGCGCACGTGTTTTTATAGCCTCCCGGAAAGAAGCCACGC
AAGCAGCAGCAGAGATTGTCCGCGCGTCCTCCCGTCCGCCCTCCCGGGTC
TTCTGTCGTGGCCTGACTGCCGACCTCTCCAAGGGGGAAAGCGAGCAGGT
GGGACTCGTGGCACGTTCAGAACCGGAGGGAGACTCTGACTGGGACCGTT
TTTCACATCCCTAAATACATTGTCACAGATGAATCTCCTCTCGGCAGTCG
CCCGCGAGACAGCCGGCAAGCTGCATGTCCTCGTGAACAACGCGGGCACC
AACTGGGCCGAGCCCGTCGAGTCCTACCCTATAAAGGTACAAGGGGAGGG
CGGGAACAGGGTGACTGGCGGCGAGGGAGGCTCATGCAGAAGCTGTCGAA
GCATGGCATGCTCATCGCGTTCCCTTCCACTGTGCAGGCTTTCGAGAAGG
TCGTCGCCCTCAACCTCCTCGCTGCCTTCAGTCTCACGCGCCTCGCCTTA
CCCCTACTTGAAGCAACGGCCACCCTTGGAAATCCTGCGCGCGTGATAAA
CATAGGTGAAGTGGTGCTTTTGGGCGAGCACCTCTTGCACTTGGCCTCAC
TTTCCCCTATTCTTCCTCCTCTCTTTCTCCCTCTAATTCCTCAACCCCAA
GGCTCGATTGACGGGGCGCGCGTTACGCTGATCGACCACTTTGCTTACTC
TTCTTCCAAGGCCGCATTGCATCAGCTTTCCAAGGTCTTAGCTGGCAAGC
TAGGTGGGTCCTCTTCCACTGTGCCCTTCCTTACCCGGGGCTCGCTGTGT
CCGCTTACTCAAATCCCTCGCCGCCTGCCCTTGTGGATGGCTCGGCGCCG
TTGCCCGCCCTTCATTCCCCAATCCCGTAGGTCACCGACACATCACCGTA
AATACCCTCGCTCCGGGTCCCTTTGCCAGCAAGATGATGAAGGTGACCCT
GGCGCGGGCGCAGGAGGAGATAGAGGCGGGGACGGCCTTGGGCAGAATAG
GATCTCCAGAGGTAGTAGGAGTGGGAGGAAAGGCGGGGTAGCGGGAAGGG
AGGGGACGAGATGCTAGACGAAGGAAGAGTCGCACGGTCAGCGGAAAGAT
CACCGGGCCGCGAGCCTATCTCAACACGCTCTCCCCTGTCCCTCCCTTCT
CCCTTCCCTTAGGATATGGCAGGAGCAGCCTTGTTCCTGGCCTCGCGGGC
AGGAGCCTACGTGACGGGCGCCGTACTGGTCGTGGACGGGGGGATCCTGG
TCAAGCCCCGACTTTAA back to topCoding sequence (CDS) from alignment at CM002460.1:1214071..1215587- >rna3278 ID=rna3278|Name=rna3278|organism=Nannochloropsis gaditana|type=CDS|length=5922bp|location=Sequence derived from alignment at CM002460.1:1214071..1215587- (Nannochloropsis gaditana)
GATATGGCAGGAGCAGCCTTGTTCCTGGCCTCGCGGGCAGGAGCCTACGT
GACGGGCGCCGTACTGGTCGTGGACGGGGGGATCCTGGTCAAGCCCCGAC
TTTAAGTCACCGACACATCACCGTAAATACCCTCGCTCCGGGTCCCTTTG
CCAGCAAGATGATGAAGGTGACCCTGGCGCGGGCGCAGGAGGAGATAGAG
GCGGGGACGGCCTTGGGCAGAATAGGATCTCCAGAGGCTCGATTGACGGG
GCGCGCGTTACGCTGATCGACCACTTTGCTTACTCTTCTTCCAAGGCCGC
ATTGCATCAGCTTTCCAAGGTCTTAGCTGGCAAGCTAGGCTTTCGAGAAG
GTCGTCGCCCTCAACCTCCTCGCTGCCTTCAGTCTCACGCGCCTCGCCTT
ACCCCTACTTGAAGCAACGGCCACCCTTGGAAATCCTGCGCGCGTGATAA
ACATAGATGAATCTCCTCTCGGCAGTCGCCCGCGAGACAGCCGGCAAGCT
GCATGTCCTCGTGAACAACGCGGGCACCAACTGGGCCGAGCCCGTCGAGT
CCTACCCTATAAAGGCGCACGTGTTTTTATAGCCTCCCGGAAAGAAGCCA
CGCAAGCAGCAGCAGAGATTGTCCGCGCGTCCTCCCGTCCGCCCTCCCGG
GTCTTCTGTCGTGGCCTGACTGCCGACCTCTCCAAGGGGGAAAGCGAGCA
GATGGACGCTCCCAGTCTGTCTACCTCCTCCCTCTCGCCCTCACTTTCTG
TTGATAAACTTTTCGACGTACGAGACAAAAACGTTTTAATTACTGGAGGT
GGGACGGGCATCGGCCGAATGATAGCTCAAGGCTTTGTGGATAACGGATA
TGGCAGGAGCAGCCTTGTTCCTGGCCTCGCGGGCAGGAGCCTACGTGACG
GGCGCCGTACTGGTCGTGGACGGGGGGATCCTGGTCAAGCCCCGACTTTA
AGTCACCGACACATCACCGTAAATACCCTCGCTCCGGGTCCCTTTGCCAG
CAAGATGATGAAGGTGACCCTGGCGCGGGCGCAGGAGGAGATAGAGGCGG
GGACGGCCTTGGGCAGAATAGGATCTCCAGAGGCTCGATTGACGGGGCGC
GCGTTACGCTGATCGACCACTTTGCTTACTCTTCTTCCAAGGCCGCATTG
CATCAGCTTTCCAAGGTCTTAGCTGGCAAGCTAGGCTTTCGAGAAGGTCG
TCGCCCTCAACCTCCTCGCTGCCTTCAGTCTCACGCGCCTCGCCTTACCC
CTACTTGAAGCAACGGCCACCCTTGGAAATCCTGCGCGCGTGATAAACAT
AGATGAATCTCCTCTCGGCAGTCGCCCGCGAGACAGCCGGCAAGCTGCAT
GTCCTCGTGAACAACGCGGGCACCAACTGGGCCGAGCCCGTCGAGTCCTA
CCCTATAAAGGCGCACGTGTTTTTATAGCCTCCCGGAAAGAAGCCACGCA
AGCAGCAGCAGAGATTGTCCGCGCGTCCTCCCGTCCGCCCTCCCGGGTCT
TCTGTCGTGGCCTGACTGCCGACCTCTCCAAGGGGGAAAGCGAGCAGATG
GACGCTCCCAGTCTGTCTACCTCCTCCCTCTCGCCCTCACTTTCTGTTGA
TAAACTTTTCGACGTACGAGACAAAAACGTTTTAATTACTGGAGGTGGGA
CGGGCATCGGCCGAATGATAGCTCAAGGCTTTGTGGATAACGGATATGGC
AGGAGCAGCCTTGTTCCTGGCCTCGCGGGCAGGAGCCTACGTGACGGGCG
CCGTACTGGTCGTGGACGGGGGGATCCTGGTCAAGCCCCGACTTTAAGTC
ACCGACACATCACCGTAAATACCCTCGCTCCGGGTCCCTTTGCCAGCAAG
ATGATGAAGGTGACCCTGGCGCGGGCGCAGGAGGAGATAGAGGCGGGGAC
GGCCTTGGGCAGAATAGGATCTCCAGAGGCTCGATTGACGGGGCGCGCGT
TACGCTGATCGACCACTTTGCTTACTCTTCTTCCAAGGCCGCATTGCATC
AGCTTTCCAAGGTCTTAGCTGGCAAGCTAGGCTTTCGAGAAGGTCGTCGC
CCTCAACCTCCTCGCTGCCTTCAGTCTCACGCGCCTCGCCTTACCCCTAC
TTGAAGCAACGGCCACCCTTGGAAATCCTGCGCGCGTGATAAACATAGAT
GAATCTCCTCTCGGCAGTCGCCCGCGAGACAGCCGGCAAGCTGCATGTCC
TCGTGAACAACGCGGGCACCAACTGGGCCGAGCCCGTCGAGTCCTACCCT
ATAAAGGCGCACGTGTTTTTATAGCCTCCCGGAAAGAAGCCACGCAAGCA
GCAGCAGAGATTGTCCGCGCGTCCTCCCGTCCGCCCTCCCGGGTCTTCTG
TCGTGGCCTGACTGCCGACCTCTCCAAGGGGGAAAGCGAGCAGATGGACG
CTCCCAGTCTGTCTACCTCCTCCCTCTCGCCCTCACTTTCTGTTGATAAA
CTTTTCGACGTACGAGACAAAAACGTTTTAATTACTGGAGGTGGGACGGG
CATCGGCCGAATGATAGCTCAAGGCTTTGTGGATAACGGATATGGCAGGA
GCAGCCTTGTTCCTGGCCTCGCGGGCAGGAGCCTACGTGACGGGCGCCGT
ACTGGTCGTGGACGGGGGGATCCTGGTCAAGCCCCGACTTTAAGTCACCG
ACACATCACCGTAAATACCCTCGCTCCGGGTCCCTTTGCCAGCAAGATGA
TGAAGGTGACCCTGGCGCGGGCGCAGGAGGAGATAGAGGCGGGGACGGCC
TTGGGCAGAATAGGATCTCCAGAGGCTCGATTGACGGGGCGCGCGTTACG
CTGATCGACCACTTTGCTTACTCTTCTTCCAAGGCCGCATTGCATCAGCT
TTCCAAGGTCTTAGCTGGCAAGCTAGGCTTTCGAGAAGGTCGTCGCCCTC
AACCTCCTCGCTGCCTTCAGTCTCACGCGCCTCGCCTTACCCCTACTTGA
AGCAACGGCCACCCTTGGAAATCCTGCGCGCGTGATAAACATAGATGAAT
CTCCTCTCGGCAGTCGCCCGCGAGACAGCCGGCAAGCTGCATGTCCTCGT
GAACAACGCGGGCACCAACTGGGCCGAGCCCGTCGAGTCCTACCCTATAA
AGGCGCACGTGTTTTTATAGCCTCCCGGAAAGAAGCCACGCAAGCAGCAG
CAGAGATTGTCCGCGCGTCCTCCCGTCCGCCCTCCCGGGTCTTCTGTCGT
GGCCTGACTGCCGACCTCTCCAAGGGGGAAAGCGAGCAGATGGACGCTCC
CAGTCTGTCTACCTCCTCCCTCTCGCCCTCACTTTCTGTTGATAAACTTT
TCGACGTACGAGACAAAAACGTTTTAATTACTGGAGGTGGGACGGGCATC
GGCCGAATGATAGCTCAAGGCTTTGTGGATAACGGATATGGCAGGAGCAG
CCTTGTTCCTGGCCTCGCGGGCAGGAGCCTACGTGACGGGCGCCGTACTG
GTCGTGGACGGGGGGATCCTGGTCAAGCCCCGACTTTAAGTCACCGACAC
ATCACCGTAAATACCCTCGCTCCGGGTCCCTTTGCCAGCAAGATGATGAA
GGTGACCCTGGCGCGGGCGCAGGAGGAGATAGAGGCGGGGACGGCCTTGG
GCAGAATAGGATCTCCAGAGGCTCGATTGACGGGGCGCGCGTTACGCTGA
TCGACCACTTTGCTTACTCTTCTTCCAAGGCCGCATTGCATCAGCTTTCC
AAGGTCTTAGCTGGCAAGCTAGGCTTTCGAGAAGGTCGTCGCCCTCAACC
TCCTCGCTGCCTTCAGTCTCACGCGCCTCGCCTTACCCCTACTTGAAGCA
ACGGCCACCCTTGGAAATCCTGCGCGCGTGATAAACATAGATGAATCTCC
TCTCGGCAGTCGCCCGCGAGACAGCCGGCAAGCTGCATGTCCTCGTGAAC
AACGCGGGCACCAACTGGGCCGAGCCCGTCGAGTCCTACCCTATAAAGGC
GCACGTGTTTTTATAGCCTCCCGGAAAGAAGCCACGCAAGCAGCAGCAGA
GATTGTCCGCGCGTCCTCCCGTCCGCCCTCCCGGGTCTTCTGTCGTGGCC
TGACTGCCGACCTCTCCAAGGGGGAAAGCGAGCAGATGGACGCTCCCAGT
CTGTCTACCTCCTCCCTCTCGCCCTCACTTTCTGTTGATAAACTTTTCGA
CGTACGAGACAAAAACGTTTTAATTACTGGAGGTGGGACGGGCATCGGCC
GAATGATAGCTCAAGGCTTTGTGGATAACGGATATGGCAGGAGCAGCCTT
GTTCCTGGCCTCGCGGGCAGGAGCCTACGTGACGGGCGCCGTACTGGTCG
TGGACGGGGGGATCCTGGTCAAGCCCCGACTTTAAGTCACCGACACATCA
CCGTAAATACCCTCGCTCCGGGTCCCTTTGCCAGCAAGATGATGAAGGTG
ACCCTGGCGCGGGCGCAGGAGGAGATAGAGGCGGGGACGGCCTTGGGCAG
AATAGGATCTCCAGAGGCTCGATTGACGGGGCGCGCGTTACGCTGATCGA
CCACTTTGCTTACTCTTCTTCCAAGGCCGCATTGCATCAGCTTTCCAAGG
TCTTAGCTGGCAAGCTAGGCTTTCGAGAAGGTCGTCGCCCTCAACCTCCT
CGCTGCCTTCAGTCTCACGCGCCTCGCCTTACCCCTACTTGAAGCAACGG
CCACCCTTGGAAATCCTGCGCGCGTGATAAACATAGATGAATCTCCTCTC
GGCAGTCGCCCGCGAGACAGCCGGCAAGCTGCATGTCCTCGTGAACAACG
CGGGCACCAACTGGGCCGAGCCCGTCGAGTCCTACCCTATAAAGGCGCAC
GTGTTTTTATAGCCTCCCGGAAAGAAGCCACGCAAGCAGCAGCAGAGATT
GTCCGCGCGTCCTCCCGTCCGCCCTCCCGGGTCTTCTGTCGTGGCCTGAC
TGCCGACCTCTCCAAGGGGGAAAGCGAGCAGATGGACGCTCCCAGTCTGT
CTACCTCCTCCCTCTCGCCCTCACTTTCTGTTGATAAACTTTTCGACGTA
CGAGACAAAAACGTTTTAATTACTGGAGGTGGGACGGGCATCGGCCGAAT
GATAGCTCAAGGCTTTGTGGATAACGGATATGGCAGGAGCAGCCTTGTTC
CTGGCCTCGCGGGCAGGAGCCTACGTGACGGGCGCCGTACTGGTCGTGGA
CGGGGGGATCCTGGTCAAGCCCCGACTTTAAGTCACCGACACATCACCGT
AAATACCCTCGCTCCGGGTCCCTTTGCCAGCAAGATGATGAAGGTGACCC
TGGCGCGGGCGCAGGAGGAGATAGAGGCGGGGACGGCCTTGGGCAGAATA
GGATCTCCAGAGGCTCGATTGACGGGGCGCGCGTTACGCTGATCGACCAC
TTTGCTTACTCTTCTTCCAAGGCCGCATTGCATCAGCTTTCCAAGGTCTT
AGCTGGCAAGCTAGGCTTTCGAGAAGGTCGTCGCCCTCAACCTCCTCGCT
GCCTTCAGTCTCACGCGCCTCGCCTTACCCCTACTTGAAGCAACGGCCAC
CCTTGGAAATCCTGCGCGCGTGATAAACATAGATGAATCTCCTCTCGGCA
GTCGCCCGCGAGACAGCCGGCAAGCTGCATGTCCTCGTGAACAACGCGGG
CACCAACTGGGCCGAGCCCGTCGAGTCCTACCCTATAAAGGCGCACGTGT
TTTTATAGCCTCCCGGAAAGAAGCCACGCAAGCAGCAGCAGAGATTGTCC
GCGCGTCCTCCCGTCCGCCCTCCCGGGTCTTCTGTCGTGGCCTGACTGCC
GACCTCTCCAAGGGGGAAAGCGAGCAGATGGACGCTCCCAGTCTGTCTAC
CTCCTCCCTCTCGCCCTCACTTTCTGTTGATAAACTTTTCGACGTACGAG
ACAAAAACGTTTTAATTACTGGAGGTGGGACGGGCATCGGCCGAATGATA
GCTCAAGGCTTTGTGGATAACG back to top
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