rna3252, rna3252 (mRNA) Nannochloropsis gaditana

Overview
Namerna3252
Unique Namerna3252
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length498
Alignment locationCM002460.1:1123469..1124464 +

Link to JBrowse

Properties
Property NameValue
Productmitochondrial import inner membrane translocase subunit tim9
Orig transcript idgnl|cribi|Naga_100951g2.1369.mrna
Orig protein idgnl|cribi|Naga_100951g2.1369
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1123469..1124464 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100951g2gene3131Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3252rna3252-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27429.1cds3243Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3252 ID=rna3252|Name=rna3252|organism=Nannochloropsis gaditana|type=mRNA|length=498bp
CCTCCTCCTCCTCCTCCTCCTCCTCCACCTCCACCTCCTCCTCTTCCTCC
TCCTCCTCCTCCTCCCCTGCCTCCTCCTCCTCTTCCACTTCCTCCTCCAC
CTCCTCCACCTCCTCTTCCTCCCCCCTACTCTCTCCTCCCTTTGCCCTCT
CCTCCCTCCCTCCCTGCGCAAGCCCCTCCTTGGCTTTGGAGGAAGCCTAC
GCTCGCTCCCCCTTCCCCCCCGCCCCCACCTCGCACGACATGCTCCTTCT
CTGCCGCGCTTTACAGGAGGAAGAGGCGAGCGGGGCAGTGCACGCAAAAA
AATGCCTCCTTAAGTCCGAGGTTCTCCCGCAGGCCCCCAGCCTTGTCGGA
ACAAAAAGAGGGCGGCCGGTGGCACGTGCTCTCCTTGCTCTCCACTGCTT
CCTCCTTCACTTCCTCCCCTTCCTCCTCCCGGGTCGCTCCCTCTCAACCA
GAAGCCGTGCATGAGTCAGAAAACGGGGGCCAGGGCGGGAAAGAGGGC
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protein sequence of rna3252

>rna3252-protein ID=rna3252-protein|Name=rna3252|organism=Nannochloropsis gaditana|type=polypeptide|length=150bp
MFGMDVTLATRAGQESCCLKLGIKHCRQPPPCIRNRVSCCHQVLKLKSTG
DTMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRS
KKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN
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mRNA from alignment at CM002460.1:1123469..1124464+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3252 ID=rna3252|Name=rna3252|organism=Nannochloropsis gaditana|type=mRNA|length=996bp|location=Sequence derived from alignment at CM002460.1:1123469..1124464+ (Nannochloropsis gaditana)
ATGTTTGGCATGGACGTGACGCTGGCCACAAGGGCCGGGCAGGAAAGCTG
CTGTCTGAAACTTGGCATCAAGCACTGCAGACAGCCGCCACCATGCATAA
GAAATGTTCCCTGTCCATAAACACCCTAGTTTCCCATCAGATCTCCCCCC
GTTTTTCAGGTGCAGGGTCTTGGGGTTTTACAAACCCTTTTGCTTGGTTT
GTGCCCTCCCATCTTTCCTGCTTAGCGTGTGTCGTGCTGCCACCAGGTTC
TGAAGTTAAAATCTACGGGTGACACCATGAACCCCATCCAAAACATACCG
CCTCATCAACGCCAAGAGTTTATGCGCACGTTGGAGGAGTTGCAGGTCAA
GGACTCTTTGCTGTAAGTgttgacggggaggagggaggttcaAGAGGGGG
TAACAGGGTGCAAGAAAACAGAGAGCAGGGTACGCCAGGTACGAGAATGG
ATGACATATCAGGCATCCCTTACAAATGTGCATAAATCAAATAACAGGAT
GTACAATCGGCTGGTAGAACGCTGTTTCAAGGAATGCGTCACGGTGCGTT
GGAACAACATGCTTAGTTGCGCCTGGTACCAGCAAAgtctgcttcttttt
ctttgctcCTCGGTGCTGTTCTGTATGATGTCCTGCGTGGAATGgcctcc
tttttccaggCTTTTATTTGTGCTGCGCTATGCGCCCCTCAAATGAGTTC
CTGATATGAACGCTTTGCAAACGTGTGGTCGCATGAGGTGTGGTCTCAAA
TAAAGTCTCTGTGTGCGGTTCTTCGTCTCTCGAGCCGCTGAACcccactt
cttccttcctttcattCCCCTGCCATCTCAGCGCTTCCGTTCCAAGAAAA
TGGACGACACCGAATTGTCTTGCGTTTCGAAGTGCGCGGAGAAATATCTC
AAGCTGACGTCGAGGGCAGGTTTCAGGTTCGCGGAGTTTCAATCGCAACA
GAgcgggtcggagggaggggttaTGCCTCCACCGGGAAATAATTGA
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Coding sequence (CDS) from alignment at CM002460.1:1123469..1124464+

>rna3252 ID=rna3252|Name=rna3252|organism=Nannochloropsis gaditana|type=CDS|length=1812bp|location=Sequence derived from alignment at CM002460.1:1123469..1124464+ (Nannochloropsis gaditana)
ATGTTTGGCATGGACGTGACGCTGGCCACAAGGGCCGGGCAGGAAAGCTG
CTGTCTGAAACTTGGCATCAAGCACTGCAGACAGCCGCCACCATGCATAA
GAAATCGTGTGTCGTGCTGCCACCAGGTTCTGAAGTTAAAATCTACGGGT
GACACCATGAACCCCATCCAAAACATACCGCCTCATCAACGCCAAGAGTT
TATGCGCACGTTGGAGGAGTTGCAGGTCAAGGACTCTTTGCTGATGTACA
ATCGGCTGGTAGAACGCTGTTTCAAGGAATGCGTCACGCGCTTCCGTTCC
AAGAAAATGGACGACACCGAATTGTCTTGCGTTTCGAAGTGCGCGGAGAA
ATATCTCAAGCTGACGTCGAGGGCAGGTTTCAGGTTCGCGGAGTTTCAAT
CGCAACAGAgcgggtcggagggaggggttaTGCCTCCACCGGGAAATAAT
TGAATGTTTGGCATGGACGTGACGCTGGCCACAAGGGCCGGGCAGGAAAG
CTGCTGTCTGAAACTTGGCATCAAGCACTGCAGACAGCCGCCACCATGCA
TAAGAAATCGTGTGTCGTGCTGCCACCAGGTTCTGAAGTTAAAATCTACG
GGTGACACCATGAACCCCATCCAAAACATACCGCCTCATCAACGCCAAGA
GTTTATGCGCACGTTGGAGGAGTTGCAGGTCAAGGACTCTTTGCTGATGT
ACAATCGGCTGGTAGAACGCTGTTTCAAGGAATGCGTCACGCGCTTCCGT
TCCAAGAAAATGGACGACACCGAATTGTCTTGCGTTTCGAAGTGCGCGGA
GAAATATCTCAAGCTGACGTCGAGGGCAGGTTTCAGGTTCGCGGAGTTTC
AATCGCAACAGAgcgggtcggagggaggggttaTGCCTCCACCGGGAAAT
AATTGAATGTTTGGCATGGACGTGACGCTGGCCACAAGGGCCGGGCAGGA
AAGCTGCTGTCTGAAACTTGGCATCAAGCACTGCAGACAGCCGCCACCAT
GCATAAGAAATCGTGTGTCGTGCTGCCACCAGGTTCTGAAGTTAAAATCT
ACGGGTGACACCATGAACCCCATCCAAAACATACCGCCTCATCAACGCCA
AGAGTTTATGCGCACGTTGGAGGAGTTGCAGGTCAAGGACTCTTTGCTGA
TGTACAATCGGCTGGTAGAACGCTGTTTCAAGGAATGCGTCACGCGCTTC
CGTTCCAAGAAAATGGACGACACCGAATTGTCTTGCGTTTCGAAGTGCGC
GGAGAAATATCTCAAGCTGACGTCGAGGGCAGGTTTCAGGTTCGCGGAGT
TTCAATCGCAACAGAgcgggtcggagggaggggttaTGCCTCCACCGGGA
AATAATTGAATGTTTGGCATGGACGTGACGCTGGCCACAAGGGCCGGGCA
GGAAAGCTGCTGTCTGAAACTTGGCATCAAGCACTGCAGACAGCCGCCAC
CATGCATAAGAAATCGTGTGTCGTGCTGCCACCAGGTTCTGAAGTTAAAA
TCTACGGGTGACACCATGAACCCCATCCAAAACATACCGCCTCATCAACG
CCAAGAGTTTATGCGCACGTTGGAGGAGTTGCAGGTCAAGGACTCTTTGC
TGATGTACAATCGGCTGGTAGAACGCTGTTTCAAGGAATGCGTCACGCGC
TTCCGTTCCAAGAAAATGGACGACACCGAATTGTCTTGCGTTTCGAAGTG
CGCGGAGAAATATCTCAAGCTGACGTCGAGGGCAGGTTTCAGGTTCGCGG
AGTTTCAATCGCAACAGAgcgggtcggagggaggggttaTGCCTCCACCG
GGAAATAATTGA
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Synonyms
Publications