EWM27429.1, cds3243 (CDS) Nannochloropsis gaditana

Overview
NameEWM27429.1
Unique Namecds3243
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1123469..1123573 +
Alignment locationCM002460.1:1123694..1123830 +
Alignment locationCM002460.1:1123966..1124011 +
Alignment locationCM002460.1:1124300..1124464 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27429.1
Productmitochondrial import inner membrane translocase subunit tim9
Orig transcript idgnl|cribi|Naga_100951g2.1369.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1123469..1123573 +
CM002460.1supercontigCM002460.1:1123694..1123830 +
CM002460.1supercontigCM002460.1:1123966..1124011 +
CM002460.1supercontigCM002460.1:1124300..1124464 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR004217Tim10/DDP_fam_Znf
Homology
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|585109673|gb|EWM27429.1| (mitochondrial import inner membrane translocase subunit tim9 [Nannochloropsis gaditana])

HSP 1 Score: 312.383 bits (799), Expect = 6.093e-108
Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0
Query:    1 MFGMDVTLATRAGQESCCLKLGIKHCRQPPPCIRNRVSCCHQVLKLKSTGDTMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN 150
            MFGMDVTLATRAGQESCCLKLGIKHCRQPPPCIRNRVSCCHQVLKLKSTGDTMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN
Sbjct:    1 MFGMDVTLATRAGQESCCLKLGIKHCRQPPPCIRNRVSCCHQVLKLKSTGDTMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN 150          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|553187295|ref|XP_005854578.1| (tim10 ddp zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422294478|gb|EKU21778.1| tim10 ddp zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 205.297 bits (521), Expect = 3.064e-66
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0
Query:   53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN 150
            MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN
Sbjct:    1 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN 98          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|676383895|ref|XP_009035226.1| (hypothetical protein AURANDRAFT_23445 [Aureococcus anophagefferens] >gi|323454558|gb|EGB10428.1| hypothetical protein AURANDRAFT_23445 [Aureococcus anophagefferens])

HSP 1 Score: 112.464 bits (280), Expect = 1.380e-29
Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 0
Query:   53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVT----RFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPP 147
            MN +QNIP HQ+ EFMR+LE +Q+KDSL MYN LVE+CF  CV      FRSK +D  E  C+ +CAEKY+KLT R GFRFAE Q+ Q     G  P P
Sbjct:    1 MNALQNIPEHQKPEFMRSLETMQMKDSLKMYNNLVEQCFAHCVAARDGSFRSKALDKKEDECICRCAEKYIKLTQRVGFRFAEHQAAQ-----GAAPSP 94          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|1072227492|gb|OEU12231.1| (mitochondrial import inner membrane translocase subunit Tim9, partial [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 109.383 bits (272), Expect = 1.331e-28
Identity = 46/79 (58.23%), Postives = 65/79 (82.28%), Query Frame = 0
Query:   53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAE 131
            M+ +QN+PP+++QEFM+ LE++Q+KDSL MYNRLVERCF  CV+ FRSK +D +E+SC+  C+ +Y+K+T R G RFAE
Sbjct:    1 MDAVQNLPPYKQQEFMQHLEQMQLKDSLSMYNRLVERCFDGCVSSFRSKTLDKSEISCMENCSGRYIKMTQRVGLRFAE 79          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|1210528043|dbj|GAX13158.1| (hypothetical protein FisN_17Hh088 [Fistulifera solaris])

HSP 1 Score: 108.997 bits (271), Expect = 2.678e-28
Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 0
Query:   53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSE 140
            M  IQ + PHQ+Q FM+ +E +Q KDSL MYN+LV RCF  CVT FRSK +D +E SCV  CA +Y+K+T R G RFAE Q+ Q+  +
Sbjct:    1 MEAIQKLAPHQQQAFMKEMEAMQTKDSLNMYNKLVMRCFDGCVTSFRSKSLDKSESSCVEHCASRYVKMTQRVGLRFAEHQAMQAAGQ 88          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|219123853|ref|XP_002182231.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406192|gb|EEC46132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 108.612 bits (270), Expect = 3.875e-28
Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 0
Query:   53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQ 136
            M  +Q + PHQ+Q FM+ +E +Q+KDSL MYN LV RCF  CVT FRSK +D +E+SC+  CA++Y+K+T R G RFAE Q+ Q
Sbjct:    1 MEAVQKLAPHQQQAFMKEMEHMQLKDSLSMYNNLVGRCFDGCVTSFRSKTLDKSEISCIEHCADRYVKMTQRVGLRFAEHQAMQ 84          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|1210521032|dbj|GAX20137.1| (hypothetical protein FisN_17Lh088 [Fistulifera solaris])

HSP 1 Score: 108.227 bits (269), Expect = 6.270e-28
Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 0
Query:   53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSE 140
            M  IQ + PHQ+Q FM+ +E +Q KDSL MYN LV RCF  CVT FRSK +D +E SCV  CA +Y+K+T R G RFAE Q+ Q+  +
Sbjct:    1 MEAIQKLAPHQQQAFMKEMEAMQTKDSLNMYNNLVMRCFDGCVTSFRSKSLDKSESSCVEHCASRYVKMTQRVGLRFAEHQAMQAAGQ 88          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|224013323|ref|XP_002295313.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969036|gb|EED87379.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.457 bits (267), Expect = 9.404e-28
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0
Query:   52 TMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAE 131
            TM  + N+PPH + EFM+ LE++Q+KDSL MYN LVERCF+ C+T FRSK +D  E SCV  CA +Y+K+T R G RFAE
Sbjct:    2 TMEGVPNLPPHLQGEFMQNLEQMQMKDSLTMYNNLVERCFQTCITSFRSKSLDKHETSCVEHCASRYIKMTQRVGLRFAE 81          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|224013249|ref|XP_002295276.1| (tim9-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968999|gb|EED87342.1| tim9-like protein, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 107.457 bits (267), Expect = 1.013e-27
Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0
Query:   52 TMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAE 131
            TM  + N+PPH + EFM+ LE++Q+KDSL MYN LVERCF+ C+T FRSK +D  E SCV  CA +Y+K+T R G RFAE
Sbjct:    5 TMEGVPNLPPHLQGEFMQNLEQMQMKDSLTMYNNLVERCFQTCITSFRSKSLDKHETSCVEHCASRYIKMTQRVGLRFAE 84          
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|673051025|ref|XP_008879473.1| (hypothetical protein H310_13665 [Aphanomyces invadans] >gi|574464792|gb|ETV91836.1| hypothetical protein H310_13665 [Aphanomyces invadans])

HSP 1 Score: 101.293 bits (251), Expect = 2.820e-25
Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0
Query:   53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEG 141
            MN   ++PPHQ+QE M+  E+ Q+++SL++YNR+V  CF ECV  FRSKK++D E +C++ CAEK+LK T R G RFAE  +QQ+  +G
Sbjct:    1 MNAAASLPPHQQQELMKHFEQKQLEESLMLYNRVVATCFNECVQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAE--AQQAAMDG 87          
The following BLAST results are available for this feature:
BLAST of EWM27429.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109673|gb|EWM27429.1|6.093e-108100.00mitochondrial import inner membrane translocase su... [more]
gi|553187295|ref|XP_005854578.1|3.064e-66100.00tim10 ddp zinc finger domain-containing protein [N... [more]
gi|676383895|ref|XP_009035226.1|1.380e-2956.57hypothetical protein AURANDRAFT_23445 [Aureococcus... [more]
gi|1072227492|gb|OEU12231.1|1.331e-2858.23mitochondrial import inner membrane translocase su... [more]
gi|1210528043|dbj|GAX13158.1|2.678e-2854.55hypothetical protein FisN_17Hh088 [Fistulifera sol... [more]
gi|219123853|ref|XP_002182231.1|3.875e-2854.76predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|1210521032|dbj|GAX20137.1|6.270e-2854.55hypothetical protein FisN_17Lh088 [Fistulifera sol... [more]
gi|224013323|ref|XP_002295313.1|9.404e-2858.75predicted protein, partial [Thalassiosira pseudona... [more]
gi|224013249|ref|XP_002295276.1|1.013e-2758.75tim9-like protein, partial [Thalassiosira pseudona... [more]
gi|673051025|ref|XP_008879473.1|2.820e-2551.69hypothetical protein H310_13665 [Aphanomyces invad... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3252rna3252Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications