EWM27429.1, cds3243 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|585109673|gb|EWM27429.1| (mitochondrial import inner membrane translocase subunit tim9 [Nannochloropsis gaditana]) HSP 1 Score: 312.383 bits (799), Expect = 6.093e-108 Identity = 150/150 (100.00%), Postives = 150/150 (100.00%), Query Frame = 0 Query: 1 MFGMDVTLATRAGQESCCLKLGIKHCRQPPPCIRNRVSCCHQVLKLKSTGDTMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN 150 MFGMDVTLATRAGQESCCLKLGIKHCRQPPPCIRNRVSCCHQVLKLKSTGDTMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN Sbjct: 1 MFGMDVTLATRAGQESCCLKLGIKHCRQPPPCIRNRVSCCHQVLKLKSTGDTMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN 150
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|553187295|ref|XP_005854578.1| (tim10 ddp zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526] >gi|422294478|gb|EKU21778.1| tim10 ddp zinc finger domain-containing protein [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 205.297 bits (521), Expect = 3.064e-66 Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0 Query: 53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN 150 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN Sbjct: 1 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPPGNN 98
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|676383895|ref|XP_009035226.1| (hypothetical protein AURANDRAFT_23445 [Aureococcus anophagefferens] >gi|323454558|gb|EGB10428.1| hypothetical protein AURANDRAFT_23445 [Aureococcus anophagefferens]) HSP 1 Score: 112.464 bits (280), Expect = 1.380e-29 Identity = 56/99 (56.57%), Postives = 67/99 (67.68%), Query Frame = 0 Query: 53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVT----RFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEGGVMPPP 147 MN +QNIP HQ+ EFMR+LE +Q+KDSL MYN LVE+CF CV FRSK +D E C+ +CAEKY+KLT R GFRFAE Q+ Q G P P Sbjct: 1 MNALQNIPEHQKPEFMRSLETMQMKDSLKMYNNLVEQCFAHCVAARDGSFRSKALDKKEDECICRCAEKYIKLTQRVGFRFAEHQAAQ-----GAAPSP 94
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|1072227492|gb|OEU12231.1| (mitochondrial import inner membrane translocase subunit Tim9, partial [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 109.383 bits (272), Expect = 1.331e-28 Identity = 46/79 (58.23%), Postives = 65/79 (82.28%), Query Frame = 0 Query: 53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAE 131 M+ +QN+PP+++QEFM+ LE++Q+KDSL MYNRLVERCF CV+ FRSK +D +E+SC+ C+ +Y+K+T R G RFAE Sbjct: 1 MDAVQNLPPYKQQEFMQHLEQMQLKDSLSMYNRLVERCFDGCVSSFRSKTLDKSEISCMENCSGRYIKMTQRVGLRFAE 79
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|1210528043|dbj|GAX13158.1| (hypothetical protein FisN_17Hh088 [Fistulifera solaris]) HSP 1 Score: 108.997 bits (271), Expect = 2.678e-28 Identity = 48/88 (54.55%), Postives = 62/88 (70.45%), Query Frame = 0 Query: 53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSE 140 M IQ + PHQ+Q FM+ +E +Q KDSL MYN+LV RCF CVT FRSK +D +E SCV CA +Y+K+T R G RFAE Q+ Q+ + Sbjct: 1 MEAIQKLAPHQQQAFMKEMEAMQTKDSLNMYNKLVMRCFDGCVTSFRSKSLDKSESSCVEHCASRYVKMTQRVGLRFAEHQAMQAAGQ 88
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|219123853|ref|XP_002182231.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217406192|gb|EEC46132.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 108.612 bits (270), Expect = 3.875e-28 Identity = 46/84 (54.76%), Postives = 62/84 (73.81%), Query Frame = 0 Query: 53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQ 136 M +Q + PHQ+Q FM+ +E +Q+KDSL MYN LV RCF CVT FRSK +D +E+SC+ CA++Y+K+T R G RFAE Q+ Q Sbjct: 1 MEAVQKLAPHQQQAFMKEMEHMQLKDSLSMYNNLVGRCFDGCVTSFRSKTLDKSEISCIEHCADRYVKMTQRVGLRFAEHQAMQ 84
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|1210521032|dbj|GAX20137.1| (hypothetical protein FisN_17Lh088 [Fistulifera solaris]) HSP 1 Score: 108.227 bits (269), Expect = 6.270e-28 Identity = 48/88 (54.55%), Postives = 61/88 (69.32%), Query Frame = 0 Query: 53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSE 140 M IQ + PHQ+Q FM+ +E +Q KDSL MYN LV RCF CVT FRSK +D +E SCV CA +Y+K+T R G RFAE Q+ Q+ + Sbjct: 1 MEAIQKLAPHQQQAFMKEMEAMQTKDSLNMYNNLVMRCFDGCVTSFRSKSLDKSESSCVEHCASRYVKMTQRVGLRFAEHQAMQAAGQ 88
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|224013323|ref|XP_002295313.1| (predicted protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220969036|gb|EED87379.1| predicted protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 107.457 bits (267), Expect = 9.404e-28 Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0 Query: 52 TMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAE 131 TM + N+PPH + EFM+ LE++Q+KDSL MYN LVERCF+ C+T FRSK +D E SCV CA +Y+K+T R G RFAE Sbjct: 2 TMEGVPNLPPHLQGEFMQNLEQMQMKDSLTMYNNLVERCFQTCITSFRSKSLDKHETSCVEHCASRYIKMTQRVGLRFAE 81
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|224013249|ref|XP_002295276.1| (tim9-like protein, partial [Thalassiosira pseudonana CCMP1335] >gi|220968999|gb|EED87342.1| tim9-like protein, partial [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 107.457 bits (267), Expect = 1.013e-27 Identity = 47/80 (58.75%), Postives = 60/80 (75.00%), Query Frame = 0 Query: 52 TMNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAE 131 TM + N+PPH + EFM+ LE++Q+KDSL MYN LVERCF+ C+T FRSK +D E SCV CA +Y+K+T R G RFAE Sbjct: 5 TMEGVPNLPPHLQGEFMQNLEQMQMKDSLTMYNNLVERCFQTCITSFRSKSLDKHETSCVEHCASRYIKMTQRVGLRFAE 84
BLAST of EWM27429.1 vs. NCBI_GenBank
Match: gi|673051025|ref|XP_008879473.1| (hypothetical protein H310_13665 [Aphanomyces invadans] >gi|574464792|gb|ETV91836.1| hypothetical protein H310_13665 [Aphanomyces invadans]) HSP 1 Score: 101.293 bits (251), Expect = 2.820e-25 Identity = 46/89 (51.69%), Postives = 66/89 (74.16%), Query Frame = 0 Query: 53 MNPIQNIPPHQRQEFMRTLEELQVKDSLLMYNRLVERCFKECVTRFRSKKMDDTELSCVSKCAEKYLKLTSRAGFRFAEFQSQQSGSEG 141 MN ++PPHQ+QE M+ E+ Q+++SL++YNR+V CF ECV FRSKK++D E +C++ CAEK+LK T R G RFAE +QQ+ +G Sbjct: 1 MNAAASLPPHQQQELMKHFEQKQLEESLMLYNRVVATCFNECVQSFRSKKLEDKEENCMNLCAEKFLKHTQRVGVRFAE--AQQAAMDG 87 The following BLAST results are available for this feature:
BLAST of EWM27429.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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