EWM27481.1, cds3202 (CDS) Nannochloropsis gaditana

Overview
NameEWM27481.1
Unique Namecds3202
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:1003632..1004687 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27481.1
Producttho complex subunit
Orig transcript idgnl|cribi|Naga_100174g14.7296.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:1003632..1004687 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR021861THO_THOC1
Homology
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|585109742|gb|EWM27481.1| (tho complex subunit [Nannochloropsis gaditana])

HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query:    1 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVATLLNGEEGAGEEGGEEGGRMGERTEIGPRQRERKEK 351
            MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVATLLNGEEGAGEEGGEEGGRMGERTEIGPRQRERKEK
Sbjct:    1 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVATLLNGEEGAGEEGGEEGGRMGERTEIGPRQRERKEK 351          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|553186544|ref|XP_005854438.1| (THO complex subunit 1, partial [Nannochloropsis gaditana CCMP526] >gi|422294621|gb|EKU21921.1| THO complex subunit 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 467.618 bits (1202), Expect = 1.476e-164
Identity = 228/230 (99.13%), Postives = 228/230 (99.13%), Query Frame = 0
Query:    1 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAR 230
            MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQE LGKGEDVLDEEKFGLRALLDLALDLAQAGREEQ PGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAR
Sbjct:    1 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEALGKGEDVLDEEKFGLRALLDLALDLAQAGREEQGPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAR 230          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|1173953567|gb|OQS01073.1| (THO complex subunit [Thraustotheca clavata])

HSP 1 Score: 131.339 bits (329), Expect = 2.157e-30
Identity = 84/281 (29.89%), Postives = 145/281 (51.60%), Query Frame = 0
Query:   39 GVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGL-FKTARKSN---LTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVA 315
            GVV E   +    E ++ + H   ++E+  + VL  +  ++  K +  +  E  G+  LLDL ++    G ++Q   L L + + +LED+ +   +   +  W  +E R ++L    F  A K+N   L++L++CN+LLR+LSK HNT  CGRI+M+L+  + LS+ SA+N  G  NLSN T F+  ++F                 ++++E    +E          DYSLYK FW +Q ++ +P   ++++  W+   ++   VL AFE    S E +A
Sbjct:   29 GVVYERVLDDMPKEKEKDIDHAHSILELGIQRVLEKMAWDLHQKPKATI--ESVGIPTLLDLCIE----GAKKQ--YLMLNAPYKILEDLMDCQTIVVCEKLWGLLESRRNSLTNSDFIQAGKTNKASLSLLRMCNALLRRLSKTHNTVFCGRILMFLAFTFSLSERSAVNLNGRYNLSNVTTFQSQDEF-----------------KISMENASLEEASS------TDYSLYKVFWDIQRYLRNPNAAIETDSEWNNLFKELDQVLTAFESNPFSPEDIA 278          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|953502367|emb|CEG36553.1| (Nuclear matrix protein [Plasmopara halstedii])

HSP 1 Score: 127.102 bits (318), Expect = 9.076e-29
Identity = 84/261 (32.18%), Postives = 136/261 (52.11%), Query Frame = 0
Query:   57 VSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312
            V+H+  ++E+A + V+  +  +++ +          G+ ALLDL +    +G       L   + + +LED+ E   +   +  W  +E R+  L      A      K++L +L++CN+LLR+LSK HN+  CGRI+M+LS  + LS+ SA+N  G AN++N T FE+ + F + +A +  K      LR+ +      + G  VD  PIDY+LY+TFW LQ    +     QS E W     +  +VL AFEG   S +
Sbjct:   49 VTHN--VLEMAVQKVVEKLSWKLMTESHAT--PSSVGIPALLDLCIIGVTSG------FLVNSTPYKILEDLMEGQTISTCEKVWVLLEIRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGRILMFLSFTFALSERSAVNLTGKANVTNVTVFEDEDAFDQAEATDVIKA---SALRLEI------DSGATVDASPIDYNLYRTFWDLQSFFREHQLATQSVENWEKLFTELNMVLAAFEGNAFSPD 290          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|566012783|gb|ETI35694.1| (hypothetical protein F443_18010 [Phytophthora parasitica P1569])

HSP 1 Score: 122.479 bits (306), Expect = 3.718e-27
Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0
Query:   50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312
            V +  RP      ++++A + V+  +  +++ +          G+ ALLDL +    +G       L   + + +LED+ E   +   +  W  +E R+  L      A      K++L +L++CN+LLR+LSK HN+  CG+I+++LS  + LS+ SA+N  G AN++N T FE+ + F   +A +  K         A E   G E       D  PIDY+LY+TFW LQ    +     QS E W  F  +  VVL AFEG   S +
Sbjct:   40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCITGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|570970548|gb|ETP33667.1| (hypothetical protein F442_17850 [Phytophthora parasitica P10297])

HSP 1 Score: 122.094 bits (305), Expect = 5.613e-27
Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0
Query:   50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312
            V +  RP      ++++A + V+  +  +++ +          G+ ALLDL +    +G       L   + + +LED+ E   +   +  W  +E R+  L      A      K++L +L++CN+LLR+LSK HN+  CG+I+++LS  + LS+ SA+N  G AN++N T FE+ + F   +A +  K         A E   G E       D  PIDY+LY+TFW LQ    +     QS E W  F  +  VVL AFEG   S +
Sbjct:   40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCIAGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|570316552|gb|ETO64500.1| (hypothetical protein F444_18035 [Phytophthora parasitica P1976])

HSP 1 Score: 122.094 bits (305), Expect = 5.777e-27
Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0
Query:   50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312
            V +  RP      ++++A + V+  +  +++ +          G+ ALLDL +    +G       L   + + +LED+ E   +   +  W  +E R+  L      A      K++L +L++CN+LLR+LSK HN+  CG+I+++LS  + LS+ SA+N  G AN++N T FE+ + F   +A +  K         A E   G E       D  PIDY+LY+TFW LQ    +     QS E W  F  +  VVL AFEG   S +
Sbjct:   40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCIAGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|675175301|ref|XP_008896535.1| (hypothetical protein PPTG_04381 [Phytophthora parasitica INRA-310] >gi|568104279|gb|ETN18936.1| hypothetical protein PPTG_04381 [Phytophthora parasitica INRA-310])

HSP 1 Score: 122.094 bits (305), Expect = 6.002e-27
Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0
Query:   50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312
            V +  RP      ++++A + V+  +  +++ +          G+ ALLDL +    +G       L   + + +LED+ E   +   +  W  +E R+  L      A      K++L +L++CN+LLR+LSK HN+  CG+I+++LS  + LS+ SA+N  G AN++N T FE+ + F   +A +  K         A E   G E       D  PIDY+LY+TFW LQ    +     QS E W  F  +  VVL AFEG   S +
Sbjct:   40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCIAGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|568008373|gb|ETL82592.1| (hypothetical protein L917_17262 [Phytophthora parasitica])

HSP 1 Score: 122.094 bits (305), Expect = 6.480e-27
Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0
Query:   50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312
            V +  RP      ++++A + V+  +  +++ +          G+ ALLDL +    +G       L   + + +LED+ E   +   +  W  +E R+  L      A      K++L +L++CN+LLR+LSK HN+  CG+I+++LS  + LS+ SA+N  G AN++N T FE+ + F   +A +  K         A E   G E       D  PIDY+LY+TFW LQ    +     QS E W  F  +  VVL AFEG   S +
Sbjct:   40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCIAGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292          
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|567950222|gb|ETK75939.1| (hypothetical protein L915_17528 [Phytophthora parasitica] >gi|567978892|gb|ETL29378.1| hypothetical protein L916_17420 [Phytophthora parasitica] >gi|568038307|gb|ETM35842.1| hypothetical protein L914_17322 [Phytophthora parasitica] >gi|570940258|gb|ETP05515.1| hypothetical protein F441_17879 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 121.709 bits (304), Expect = 8.887e-27
Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0
Query:   50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312
            V +  RP      ++++A + V+  +  +++ +          G+ ALLDL +    +G       L   + + +LED+ E   +   +  W  +E R+  L      A      K++L +L++CN+LLR+LSK HN+  CG+I+++LS  + LS+ SA+N  G AN++N T FE+ + F   +A +  K         A E   G E       D  PIDY+LY+TFW LQ    +     QS E W  F  +  VVL AFEG   S +
Sbjct:   40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCITGVTSG------FLVNSTPYKVLEDLMEGQTLNTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292          
The following BLAST results are available for this feature:
BLAST of EWM27481.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109742|gb|EWM27481.1|0.000e+0100.00tho complex subunit [Nannochloropsis gaditana][more]
gi|553186544|ref|XP_005854438.1|1.476e-16499.13THO complex subunit 1, partial [Nannochloropsis ga... [more]
gi|1173953567|gb|OQS01073.1|2.157e-3029.89THO complex subunit [Thraustotheca clavata][more]
gi|953502367|emb|CEG36553.1|9.076e-2932.18Nuclear matrix protein [Plasmopara halstedii][more]
gi|566012783|gb|ETI35694.1|3.718e-2731.11hypothetical protein F443_18010 [Phytophthora para... [more]
gi|570970548|gb|ETP33667.1|5.613e-2731.11hypothetical protein F442_17850 [Phytophthora para... [more]
gi|570316552|gb|ETO64500.1|5.777e-2731.11hypothetical protein F444_18035 [Phytophthora para... [more]
gi|675175301|ref|XP_008896535.1|6.002e-2731.11hypothetical protein PPTG_04381 [Phytophthora para... [more]
gi|568008373|gb|ETL82592.1|6.480e-2731.11hypothetical protein L917_17262 [Phytophthora para... [more]
gi|567950222|gb|ETK75939.1|8.887e-2731.11hypothetical protein L915_17528 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3210rna3210Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications