rna3210, rna3210 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3210
Unique Name	rna3210
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	855
Alignment location	CM002460.1:1003632..1004687 -

Link to JBrowse

Properties


Property Name	Value
Product	tho complex subunit
Orig transcript id	gnl\|cribi\|Naga_100174g14.7296.mrna
Orig protein id	gnl\|cribi\|Naga_100174g14.7296
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:1003632..1004687 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100174g14	gene3088	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27481.1	cds3202	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3210	rna3210-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:1003632..1004687-
coding sequence from alignment at CM002460.1:1003632..1004687-

mRNA sequence

>rna3210 ID=rna3210|Name=rna3210|organism=Nannochloropsis gaditana|type=mRNA|length=855bp
ATGGAGGCGTTTTTGGGGTGCAAATACTTGACCAACAGTCGCCTCTTCCG
GCTGCAGCTCCATGATCCCTTGATCCGCACACAGGTCCTAACACAGCTCC
TCATCGTCTTGAACTATGCCTCGGCGGCCACCGCCCTCGCGGTCGCCAGT
CCCCCCGCTTCCTCCTCCCCGGCCCCGAACCCTTCTCCTCCCAAAAAGGG
CGCGAACGATTTGGTCAAGCACGCCCGGCGACTGATCCGGAACACGTCCG
CCCAAGGGGCGGTCTATTTGGGTGTTTTGGACACGGTTTTGCACCGGGAG
CAAGCCTGGTTGTCCTGGAAACGTTTGCAACGGTGCGAACCACGGATTGA
GAAGCCCCCCGCGCCCCCCGCCCGGACGGTGCGGACCATGGAGGCGGTGC
GGCAGGCTCTGGCGGGGGCGGGAAAGCCGTCGGGGGTGGTGGCTCAGCAA
CAGAAAGCGTTTTACGGGCGTCCTTTGCCCGTGCCGCGCCCCGTCAATTT
GGCGGAGGTGGAGGCGGAGGTGGGGGAGGCGGTGGGGCGGACGTTTGAGA
ACTACGTACGGCCCCGGATGGAAGAGGCAGAGGACCCAGAGGCCTGCATC
GACGAGGAGTACCACCCGCGGCACGAGCCTGTGTTTTGCTGGCGGGCGAT
GCGGTTGGGCTGGGCGGCTGATGCTCGGGTATTGGTGGGGATGGAAAACG
CGTCGTTGGACGCCTTGTGCCGGAAGATGAAGGGGGAGGACGGCGAAGAA
GACGGCGGGGGGGAGGGAAAAGGGAAAGAAGAGGGGAGGAGGAAGCGGAA
GAGGAAGGAGAACGGGGAGGCGGGGGCCGAACAGGAAGTGATGCATGGAA
CGTGA

protein sequence of rna3210

>rna3210-protein ID=rna3210-protein|Name=rna3210|organism=Nannochloropsis gaditana|type=polypeptide|length=351bp
MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAV
AEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDL
ALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESA
LFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSD
PSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGG
KEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVV
LQAFEGFTVSEEAVATLLNGEEGAGEEGGEEGGRMGERTEIGPRQRERKE
K

mRNA from alignment at CM002460.1:1003632..1004687-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3210 ID=rna3210|Name=rna3210|organism=Nannochloropsis gaditana|type=mRNA|length=1056bp|location=Sequence derived from alignment at CM002460.1:1003632..1004687- (Nannochloropsis gaditana)
ATGGTCAAGCACGCTTCCACATCGGAGGCCTTCTGTCCAGGCGATGCCGA
GGGAGCCATTTGTCGATTGGAAGAGTGCATCCGCGGGAACTATTGCAAGG
GTACGGCCGGTTGGGGCGTCGTGCGTGAGACGGCGCACGAGGTGGCGGTG
GCGGAGGCAGACAGACCGGTTTCTCACGACACGGACCTGATCGAGGTCGC
TTTCCGCGCGGTCCTGGCTGGCATCGTCCAGGAGGTATTGGGAAAGGGGG
AGGACGTGTTGGACGAGGAGAAATTTGGACTGCGGGCTTTGTTGGACCTT
GCCCTCGACTTGGCTCAGGCCGGCAGGGAGGAGCAGGAGCCCGGCCTGGG
TCTCCGCAGCGTCTTCTTCCTGTTAGAGGACATCTTCGAACTCTTGGGGG
TGGAACAGATACAGAACTTTTGGCCAGAGGTGGAGAAAAGGGAGAGCGCC
CTGTTCGGGCTCTTCAAAACAGCCCGGAAGAGCAATTTGACCATGCTAAA
ACTCTGCAACTCCCTGCTGCGGAAGCTATCCAAAGGCCACAACACGGCCA
TCTGCGGGCGGATCATGATGTATTTGTCGCGAAATTGGGAGCTCAGCGAT
CCCTCTGCGATCAATAAGGGGGGAATGGCGAATTTGAGCAACAAGACAGC
TTTTGAGGAGCCGGAGGACTTTGCCCGGCAGCAGGCTCGAGAAGCGGAAA
AGACACGGCGGGACGAGGAGCTGAGAGTGGCGGTGGAAGGGCGAGGGGGG
AAGGAAGGGGGGGAGGAGGTGGATGAGGAGCCGATTGACTACTCGCTGTA
CAAGACCTTTTGGGGTCTCCAGGAGCATGTGAGTGACCCGGCGCGGCTCC
TGCAGAGCGAAGAGGCCTGGTCGGCGTTTCTCCGGGACGCCAAGGTGGTG
CTCCAGGCTTTTGAGGGGTTCACAGTCAGTGAGGAAGCAGTGGCCACGTT
GTTGAACGGGGAGGAGGGAGCGGGGGAGGAAGGGGGGGAGGAAGGGGGGA
GAATGGGGGAGAGAACCGAAATCGGGCCGAGACAGAGGGAGAGGAAAGAA
AAGTAG

Coding sequence (CDS) from alignment at CM002460.1:1003632..1004687-

>rna3210 ID=rna3210|Name=rna3210|organism=Nannochloropsis gaditana|type=CDS|length=1056bp|location=Sequence derived from alignment at CM002460.1:1003632..1004687- (Nannochloropsis gaditana)
ATGGTCAAGCACGCTTCCACATCGGAGGCCTTCTGTCCAGGCGATGCCGA
GGGAGCCATTTGTCGATTGGAAGAGTGCATCCGCGGGAACTATTGCAAGG
GTACGGCCGGTTGGGGCGTCGTGCGTGAGACGGCGCACGAGGTGGCGGTG
GCGGAGGCAGACAGACCGGTTTCTCACGACACGGACCTGATCGAGGTCGC
TTTCCGCGCGGTCCTGGCTGGCATCGTCCAGGAGGTATTGGGAAAGGGGG
AGGACGTGTTGGACGAGGAGAAATTTGGACTGCGGGCTTTGTTGGACCTT
GCCCTCGACTTGGCTCAGGCCGGCAGGGAGGAGCAGGAGCCCGGCCTGGG
TCTCCGCAGCGTCTTCTTCCTGTTAGAGGACATCTTCGAACTCTTGGGGG
TGGAACAGATACAGAACTTTTGGCCAGAGGTGGAGAAAAGGGAGAGCGCC
CTGTTCGGGCTCTTCAAAACAGCCCGGAAGAGCAATTTGACCATGCTAAA
ACTCTGCAACTCCCTGCTGCGGAAGCTATCCAAAGGCCACAACACGGCCA
TCTGCGGGCGGATCATGATGTATTTGTCGCGAAATTGGGAGCTCAGCGAT
CCCTCTGCGATCAATAAGGGGGGAATGGCGAATTTGAGCAACAAGACAGC
TTTTGAGGAGCCGGAGGACTTTGCCCGGCAGCAGGCTCGAGAAGCGGAAA
AGACACGGCGGGACGAGGAGCTGAGAGTGGCGGTGGAAGGGCGAGGGGGG
AAGGAAGGGGGGGAGGAGGTGGATGAGGAGCCGATTGACTACTCGCTGTA
CAAGACCTTTTGGGGTCTCCAGGAGCATGTGAGTGACCCGGCGCGGCTCC
TGCAGAGCGAAGAGGCCTGGTCGGCGTTTCTCCGGGACGCCAAGGTGGTG
CTCCAGGCTTTTGAGGGGTTCACAGTCAGTGAGGAAGCAGTGGCCACGTT
GTTGAACGGGGAGGAGGGAGCGGGGGAGGAAGGGGGGGAGGAAGGGGGGA
GAATGGGGGAGAGAACCGAAATCGGGCCGAGACAGAGGGAGAGGAAAGAA
AAGTAG

Synonyms

Publications