EWM27481.1, cds3202 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|585109742|gb|EWM27481.1| (tho complex subunit [Nannochloropsis gaditana]) HSP 1 Score: 707.212 bits (1824), Expect = 0.000e+0 Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0 Query: 1 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVATLLNGEEGAGEEGGEEGGRMGERTEIGPRQRERKEK 351 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVATLLNGEEGAGEEGGEEGGRMGERTEIGPRQRERKEK Sbjct: 1 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVATLLNGEEGAGEEGGEEGGRMGERTEIGPRQRERKEK 351
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|553186544|ref|XP_005854438.1| (THO complex subunit 1, partial [Nannochloropsis gaditana CCMP526] >gi|422294621|gb|EKU21921.1| THO complex subunit 1, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 467.618 bits (1202), Expect = 1.476e-164 Identity = 228/230 (99.13%), Postives = 228/230 (99.13%), Query Frame = 0 Query: 1 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAR 230 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQE LGKGEDVLDEEKFGLRALLDLALDLAQAGREEQ PGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAR Sbjct: 1 MVKHASTSEAFCPGDAEGAICRLEECIRGNYCKGTAGWGVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEALGKGEDVLDEEKFGLRALLDLALDLAQAGREEQGPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTARKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAR 230
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|1173953567|gb|OQS01073.1| (THO complex subunit [Thraustotheca clavata]) HSP 1 Score: 131.339 bits (329), Expect = 2.157e-30 Identity = 84/281 (29.89%), Postives = 145/281 (51.60%), Query Frame = 0 Query: 39 GVVRETAHEVAVAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGL-FKTARKSN---LTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEEAVA 315 GVV E + E ++ + H ++E+ + VL + ++ K + + E G+ LLDL ++ G ++Q L L + + +LED+ + + + W +E R ++L F A K+N L++L++CN+LLR+LSK HNT CGRI+M+L+ + LS+ SA+N G NLSN T F+ ++F ++++E +E DYSLYK FW +Q ++ +P ++++ W+ ++ VL AFE S E +A Sbjct: 29 GVVYERVLDDMPKEKEKDIDHAHSILELGIQRVLEKMAWDLHQKPKATI--ESVGIPTLLDLCIE----GAKKQ--YLMLNAPYKILEDLMDCQTIVVCEKLWGLLESRRNSLTNSDFIQAGKTNKASLSLLRMCNALLRRLSKTHNTVFCGRILMFLAFTFSLSERSAVNLNGRYNLSNVTTFQSQDEF-----------------KISMENASLEEASS------TDYSLYKVFWDIQRYLRNPNAAIETDSEWNNLFKELDQVLTAFESNPFSPEDIA 278
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|953502367|emb|CEG36553.1| (Nuclear matrix protein [Plasmopara halstedii]) HSP 1 Score: 127.102 bits (318), Expect = 9.076e-29 Identity = 84/261 (32.18%), Postives = 136/261 (52.11%), Query Frame = 0 Query: 57 VSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKEGGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312 V+H+ ++E+A + V+ + +++ + G+ ALLDL + +G L + + +LED+ E + + W +E R+ L A K++L +L++CN+LLR+LSK HN+ CGRI+M+LS + LS+ SA+N G AN++N T FE+ + F + +A + K LR+ + + G VD PIDY+LY+TFW LQ + QS E W + +VL AFEG S + Sbjct: 49 VTHN--VLEMAVQKVVEKLSWKLMTESHAT--PSSVGIPALLDLCIIGVTSG------FLVNSTPYKILEDLMEGQTISTCEKVWVLLEIRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGRILMFLSFTFALSERSAVNLTGKANVTNVTVFEDEDAFDQAEATDVIKA---SALRLEI------DSGATVDASPIDYNLYRTFWDLQSFFREHQLATQSVENWEKLFTELNMVLAAFEGNAFSPD 290
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|566012783|gb|ETI35694.1| (hypothetical protein F443_18010 [Phytophthora parasitica P1569]) HSP 1 Score: 122.479 bits (306), Expect = 3.718e-27 Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0 Query: 50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312 V + RP ++++A + V+ + +++ + G+ ALLDL + +G L + + +LED+ E + + W +E R+ L A K++L +L++CN+LLR+LSK HN+ CG+I+++LS + LS+ SA+N G AN++N T FE+ + F +A + K A E G E D PIDY+LY+TFW LQ + QS E W F + VVL AFEG S + Sbjct: 40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCITGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|570970548|gb|ETP33667.1| (hypothetical protein F442_17850 [Phytophthora parasitica P10297]) HSP 1 Score: 122.094 bits (305), Expect = 5.613e-27 Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0 Query: 50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312 V + RP ++++A + V+ + +++ + G+ ALLDL + +G L + + +LED+ E + + W +E R+ L A K++L +L++CN+LLR+LSK HN+ CG+I+++LS + LS+ SA+N G AN++N T FE+ + F +A + K A E G E D PIDY+LY+TFW LQ + QS E W F + VVL AFEG S + Sbjct: 40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCIAGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|570316552|gb|ETO64500.1| (hypothetical protein F444_18035 [Phytophthora parasitica P1976]) HSP 1 Score: 122.094 bits (305), Expect = 5.777e-27 Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0 Query: 50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312 V + RP ++++A + V+ + +++ + G+ ALLDL + +G L + + +LED+ E + + W +E R+ L A K++L +L++CN+LLR+LSK HN+ CG+I+++LS + LS+ SA+N G AN++N T FE+ + F +A + K A E G E D PIDY+LY+TFW LQ + QS E W F + VVL AFEG S + Sbjct: 40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCIAGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|675175301|ref|XP_008896535.1| (hypothetical protein PPTG_04381 [Phytophthora parasitica INRA-310] >gi|568104279|gb|ETN18936.1| hypothetical protein PPTG_04381 [Phytophthora parasitica INRA-310]) HSP 1 Score: 122.094 bits (305), Expect = 6.002e-27 Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0 Query: 50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312 V + RP ++++A + V+ + +++ + G+ ALLDL + +G L + + +LED+ E + + W +E R+ L A K++L +L++CN+LLR+LSK HN+ CG+I+++LS + LS+ SA+N G AN++N T FE+ + F +A + K A E G E D PIDY+LY+TFW LQ + QS E W F + VVL AFEG S + Sbjct: 40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCIAGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|568008373|gb|ETL82592.1| (hypothetical protein L917_17262 [Phytophthora parasitica]) HSP 1 Score: 122.094 bits (305), Expect = 6.480e-27 Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0 Query: 50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312 V + RP ++++A + V+ + +++ + G+ ALLDL + +G L + + +LED+ E + + W +E R+ L A K++L +L++CN+LLR+LSK HN+ CG+I+++LS + LS+ SA+N G AN++N T FE+ + F +A + K A E G E D PIDY+LY+TFW LQ + QS E W F + VVL AFEG S + Sbjct: 40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCIAGVTSG------FLVNSTPYKVLEDLMEGQTINTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292
BLAST of EWM27481.1 vs. NCBI_GenBank
Match: gi|567950222|gb|ETK75939.1| (hypothetical protein L915_17528 [Phytophthora parasitica] >gi|567978892|gb|ETL29378.1| hypothetical protein L916_17420 [Phytophthora parasitica] >gi|568038307|gb|ETM35842.1| hypothetical protein L914_17322 [Phytophthora parasitica] >gi|570940258|gb|ETP05515.1| hypothetical protein F441_17879 [Phytophthora parasitica CJ01A1]) HSP 1 Score: 121.709 bits (304), Expect = 8.887e-27 Identity = 84/270 (31.11%), Postives = 133/270 (49.26%), Query Frame = 0 Query: 50 VAEADRPVSHDTDLIEVAFRAVLAGIVQEVLGKGEDVLDEEKFGLRALLDLALDLAQAGREEQEPGLGLRSVFFLLEDIFELLGVEQIQNFWPEVEKRESALFGLFKTA-----RKSNLTMLKLCNSLLRKLSKGHNTAICGRIMMYLSRNWELSDPSAINKGGMANLSNKTAFEEPEDFARQQAREAEKTRRDEELRVAVEGRGGKE--GGEEVDEEPIDYSLYKTFWGLQEHVSDPARLLQSEEAWSAFLRDAKVVLQAFEGFTVSEE 312 V + RP ++++A + V+ + +++ + G+ ALLDL + +G L + + +LED+ E + + W +E R+ L A K++L +L++CN+LLR+LSK HN+ CG+I+++LS + LS+ SA+N G AN++N T FE+ + F +A + K A E G E D PIDY+LY+TFW LQ + QS E W F + VVL AFEG S + Sbjct: 40 VLKPPRPQEFTHSVLDLAVQKVVEKLSWKLMTEAHAT--PSSVGVPALLDLCITGVTSG------FLVNSTPYKVLEDLMEGQTLNTCEKVWELLESRKDKLTTPAFIAEKGRTTKASLCLLRMCNALLRRLSKTHNSVFCGKILVFLSFTFALSERSAVNLTGKANVTNVTVFEDQDAFDLAEATDVAK---------ASEVVPGLEIDSDPSADVGPIDYNLYRTFWDLQSFFREHQMATQSAENWEKFFTELNVVLAAFEGNAFSPD 292 The following BLAST results are available for this feature:
BLAST of EWM27481.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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