EWM27482.1, cds3189 (CDS) Nannochloropsis gaditana

Overview
NameEWM27482.1
Unique Namecds3189
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:979242..979345 -
Alignment locationCM002460.1:977982..978924 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27482.1
ProductRab-GTPase-TBC domain protein
Orig transcript idgnl|cribi|Naga_100174g1.7297.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:979242..979345 -
CM002460.1supercontigCM002460.1:977982..978924 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR000195Rab-GTPase-TBC_dom
Homology
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|585109743|gb|EWM27482.1| (Rab-GTPase-TBC domain protein [Nannochloropsis gaditana])

HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0
Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 0
Query:    1 MVVNLRSLRVSTGAAGVARHLRYKAILSPLQNANKPTMDDFLGKLADTSTAWDEQQLHVLKSLALERSGLPSHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGEGGREGKRVVSGTRMEEFQAPWRISLTRSTGNMTSFSSSIASCWTWSPCTMWRRHPPLRPPPLPPPAPPPLFPPPRRPT 348
            MVVNLRSLRVSTGAAGVARHLRYKAILSPLQNANKPTMDDFLGKLADTSTAWDEQQLHVLKSLALERSGLPSHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGEGGREGKRVVSGTRMEEFQAPWRISLTRSTGNMTSFSSSIASCWTWSPCTMWRRHPPLRPPPLPPPAPPPLFPPPRRPT
Sbjct:    1 MVVNLRSLRVSTGAAGVARHLRYKAILSPLQNANKPTMDDFLGKLADTSTAWDEQQLHVLKSLALERSGLPSHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGEGGREGKRVVSGTRMEEFQAPWRISLTRSTGNMTSFSSSIASCWTWSPCTMWRRHPPLRPPPLPPPAPPPLFPPPRRPT 348          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|953501867|emb|CEG36798.1| (alpha- [Plasmopara halstedii])

HSP 1 Score: 77.411 bits (189), Expect = 6.886e-12
Identity = 49/156 (31.41%), Postives = 67/156 (42.95%), Query Frame = 0
Query:  108 LQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVL 263
            L A R++Y   KQ +     ++   G +DPL+ALTA     L                                      G   +W +Y++   L+EE+  DL RL+P G +E  F  P     L  VLFVW  LH   +YRQGMH+V AV+LY  
Sbjct:   19 LTAQRERYERLKQHM---VFQIDAAGSNDPLTALTATKNSAL--------------------------------------GRSSSWSQYFSDETLIEEINTDLDRLFPAG-NENFFQNPLYLSTLRHVLFVWCRLHPDVAYRQGMHDVVAVVLYAF 132          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1173932756|gb|OQR84668.1| (alpha-1,3-mannosyltransferase [Achlya hypogyna])

HSP 1 Score: 77.0258 bits (188), Expect = 9.484e-12
Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = 0
Query:  149 LTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGA-WRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGEG 271
            L  E V+  +   ETT+E  + K G      +    P + E G  W + +    L+ E++ DL RLYP G +     RP+   +L  VLFVW   H A SYRQGMH++ AVLLY +    GG+G
Sbjct:   15 LRVEHVDLARKAYETTREQLQPKAG------ASNHHPLSDESGNPWHQVFEDEPLVREIKTDLDRLYPQGNEMFFQERPELMGILRNVLFVWCKQHPAVSYRQGMHDLVAVLLYAV----GGDG 128          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1035902094|gb|OAY31694.1| (hypothetical protein MANES_14G132800 [Manihot esculenta])

HSP 1 Score: 76.2554 bits (186), Expect = 1.176e-11
Identity = 64/230 (27.83%), Postives = 104/230 (45.22%), Query Frame = 0
Query:   44 KLADTSTAWDEQQLHVLKSLALERSGLPSHA--RGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREG-SKARKP-GAGEGGAWRRYYAGLELLEEVRRDLSRLYP---LGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
            K +D      ++++++ K   +  +GLP     RG  W+  L  LPP+R+            W   L   RQ+YA  K++L              P S L A   + L  +E+    DG            GPL+R G S    P   G+  AW +Y+   E+ +++ RDL R +P       ++ F+R K ++ +  +L ++A L+ A  Y QGM+EV A + YV  A+
Sbjct:  112 KRSDIEHELSQKEINLEKLRRIASTGLPEGGGLRGTTWKLLLGYLPPSRDL-----------WEKELTENRQKYAKLKEELLSS-----------P-SELNAVNNDVLNSDELNAEGDGG-----------GPLKRHGVSHEDHPLSVGKSSAWHQYFQHTEIADQIDRDLQRTHPNIKFFSGDSSFSR-KNRDAMRNILLLFAKLNPAIRYVQGMNEVLAPIFYVFSAD 306          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1150677076|ref|XP_020275253.1| (TBC1 domain family member 5 homolog B-like [Asparagus officinalis])

HSP 1 Score: 75.485 bits (184), Expect = 3.136e-11
Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = 0
Query:  192 AWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
             WRRY+   EL + V +DLSRLYP    E +F  P  Q ML  +L VW   HQ   YRQGMHE+ A LLYVL  +
Sbjct:   96 TWRRYFKNAELEKLVDQDLSRLYP--EHEDYFQTPACQAMLRRILLVWCLRHQEYGYRQGMHELLAPLLYVLHVD 168          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1141998609|gb|ONK79425.1| (uncharacterized protein A4U43_C01F6240 [Asparagus officinalis])

HSP 1 Score: 74.7146 bits (182), Expect = 5.550e-11
Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = 0
Query:  192 AWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
             WRRY+   EL + V +DLSRLYP    E +F  P  Q ML  +L VW   HQ   YRQGMHE+ A LLYVL  +
Sbjct:   96 TWRRYFKNAELEKLVDQDLSRLYP--EHEDYFQTPACQAMLRRILLVWCLRHQEYGYRQGMHELLAPLLYVLHVD 168          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|326526553|dbj|BAJ97293.1| (predicted protein [Hordeum vulgare subsp. vulgare])

HSP 1 Score: 73.9442 bits (180), Expect = 6.257e-11
Identity = 63/228 (27.63%), Postives = 103/228 (45.18%), Query Frame = 0
Query:   45 LADTSTAWDEQQLHVLKSLALERSGLP----SHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPL-RREGSKARKP-GAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
            LAD   A  ++ +++ +   L   G+P    +  R L W+  L  LP  R             WP  L+  R QY+ +K +   +                   P E+L R  +EE K   +  KE + ++ G L R E +    P   G    W +Y+   E+LE++ RD+ R +P   D++ F+    QE L  +L +++ L+ +  Y QGM+EV A L YVL+ +
Sbjct:   88 LADFKAALSKKVVNMGELRRLACLGVPDGGGTDVRPLVWKLLLGYLPTER-----------SLWPYELEKKRSQYSAYKDEFLLN-------------------PSEKLRR--IEESKLSRK--KELTGERNGLLPRSEVTNEEHPLSFGRSSLWNQYFQESEILEQIDRDVKRTHP---DKSFFSAKSNQESLRRILIIYSRLYPSVRYVQGMNEVLAPLFYVLKND 278          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1214710391|gb|OWZ21486.1| (Alpha-1,3-mannosyltransferase [Phytophthora megakarya])

HSP 1 Score: 73.559 bits (179), Expect = 1.322e-10
Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0
Query:  188 GEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVL 263
             + G+W +Y+    LLEE+  DL RLYP G +E+ F        L  VLFVW  LH   +YRQGMH+V AV+LY  
Sbjct:   53 AKDGSWTQYFTDESLLEEINTDLERLYPAG-NESFFQNELYMTTLRHVLFVWCRLHPDVAYRQGMHDVVAVVLYAF 127          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|743816231|ref|XP_011020119.1| (PREDICTED: TBC1 domain family member 13-like isoform X2 [Populus euphratica])

HSP 1 Score: 71.2478 bits (173), Expect = 3.959e-10
Identity = 63/233 (27.04%), Postives = 103/233 (44.21%), Query Frame = 0
Query:   44 KLADTSTAWDEQQLHVLKSLALERSGLPSHA--RGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLY---PDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREG-SKARKP-GAGEGGAWRRYYAGLELLEEVRRDLSRLYP---LGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
            K +D    + ++++++ K   +   G+P     R  AW+  L  L P+ +            W   L   RQ+YA  K++L     ++TRV  +       A+ +A                 E + EG  D  GPL+R G S    P   G   AW  Y+   E+ E++ RDL R +P       E+ F++ K +E +  +L ++A L+ A  Y QGM+EV A + YV   +
Sbjct:   99 KRSDLEYEFSQKEINLEKVKRIASMGVPDGGGLRATAWKLLLGYLSPSHDV-----------WEKELTENRQKYAKLKEELLLSPSEYTRVKAD-------AMISA-----------------ELSSEG--DVAGPLKRRGISHGDHPLSVGMASAWHHYFKHTEIAEQIDRDLQRTHPDMKFFSGESSFSK-KNREAMRNILLLFAKLNPAICYVQGMNEVLAPIFYVFSTD 293          
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1098840257|ref|XP_018826814.1| (PREDICTED: TBC1 domain family member 13-like isoform X1 [Juglans regia])

HSP 1 Score: 71.633 bits (174), Expect = 3.960e-10
Identity = 63/222 (28.38%), Postives = 101/222 (45.50%), Query Frame = 0
Query:   54 EQQLHVLKSLALERSGLPS--HARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEG--SKDKEGPLRREG-SKARKP-GAGEGGAWRRYYAGLELLEEVRRDLSRLYP---LGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
            E  L  L+ +A   +GLP     R +AW+  L  LPP+R+            W   L   R++YA+ K++L                     +P E   R      KDG  ++ E     D +GPL+R+G S    P   G+   W  Y+   E++E++ RDL R +P       ++ F+R K +E +  +L ++A L+ A  Y QGM+EV A + +V   +
Sbjct:  112 EINLEKLQRIA--STGLPDGGRLRAMAWKLLLGYLPPSRDL-----------WEKELTENRKKYANLKEELL-------------------QSPSEFTKR------KDGTFSSDEQHVDSDMDGPLQRQGISPEDHPLSLGKASVWHEYFQHTEIVEQIDRDLQRTHPDMKFFSGDSPFSR-KNKEAMRNILILFAKLNPAIRYVQGMNEVLAPIYFVCTTD 294          
The following BLAST results are available for this feature:
BLAST of EWM27482.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109743|gb|EWM27482.1|0.000e+0100.00Rab-GTPase-TBC domain protein [Nannochloropsis gad... [more]
gi|953501867|emb|CEG36798.1|6.886e-1231.41alpha- [Plasmopara halstedii][more]
gi|1173932756|gb|OQR84668.1|9.484e-1237.90alpha-1,3-mannosyltransferase [Achlya hypogyna][more]
gi|1035902094|gb|OAY31694.1|1.176e-1127.83hypothetical protein MANES_14G132800 [Manihot escu... [more]
gi|1150677076|ref|XP_020275253.1|3.136e-1150.67TBC1 domain family member 5 homolog B-like [Aspara... [more]
gi|1141998609|gb|ONK79425.1|5.550e-1150.67uncharacterized protein A4U43_C01F6240 [Asparagus ... [more]
gi|326526553|dbj|BAJ97293.1|6.257e-1127.63predicted protein [Hordeum vulgare subsp. vulgare][more]
gi|1214710391|gb|OWZ21486.1|1.322e-1046.05Alpha-1,3-mannosyltransferase [Phytophthora megaka... [more]
gi|743816231|ref|XP_011020119.1|3.959e-1027.04PREDICTED: TBC1 domain family member 13-like isofo... [more]
gi|1098840257|ref|XP_018826814.1|3.960e-1028.38PREDICTED: TBC1 domain family member 13-like isofo... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3197rna3197Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications