rna3197, rna3197 (mRNA) Nannochloropsis gaditana

Overview
Namerna3197
Unique Namerna3197
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1888
Alignment locationCM002460.1:977982..979345 -

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Properties
Property NameValue
ProductRab-GTPase-TBC domain protein
Orig transcript idgnl|cribi|Naga_100174g1.7297.mrna
Orig protein idgnl|cribi|Naga_100174g1.7297
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:977982..979345 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100174g1gene3075Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3197rna3197-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27482.1cds3189Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3197 ID=rna3197|Name=rna3197|organism=Nannochloropsis gaditana|type=mRNA|length=1888bp
GGCCCTGTTTCGGTGGCGTGCTTTTTCCATGTGCCTCGTCTTCTTCAAGC
CGTCGCTGGGAGCGAGCGCCGGCTCCGAGTCAAAGCAACCACGTGCTGAG
TTTAATCCCACGCCAGACAAGGACGACACACCCACGCAAGCCAGCCCTCG
GCATGGCCAATTCACCGACTGTCCTGATTTTGGCACGCAGTGCATGCGTG
CACAGCAGTTTATGCTCTGGGCTTGTGAACGCATGTGAATCCCTGCTTAG
ACGAGAACATCTCCAACTCGCCAGTCCCCCTCAACCTGCGTGCATCTGCC
TTCCCGCCCCTCCAATGTCCTTCCCGTGTCACAGATAGCGTCCGACTCAA
GCAGACATCATGTTCGCCGCCCGTTCCTCCCTTCGCCCTGCTGCCATGGG
CGCTGTGGCCTGTGCCGTGCGCTCCATTTCCTCCACGAAAGCGACGGCAG
CCCGGGTTGCAGTTGTCGGCGCATCTGGCGGTATCGGGCAACCTTTATCC
ATGCTACTCAAATTGGACCCCAGCATCAAGGAATTGAACCTGTACGACAT
CGTCCATACACCCGGTGTGGCTGCAGACCTTTCTCACATCCCTTTCCCCG
CCAAAGTGACTGGCTACAAGGGCGCAGATTCCATCCACGCCGCCCTGGAG
GGATGCGACGTGATCGTGGTTCCCGCGGGTGTTCCTCGTAAACCAGGCAT
GACCCGAGACGACCTTTTCAACATCAACGCCGGTATCGTCAAGACCATTG
CAGAGGCCTCCGCCAAAGTGGCTCCCAAGGCCTGTTACCTCATCATCTCC
AACCCGGTGAATTCCACCGTCCCCATTTTTGCGGAGGTCTTGAAGAAGGC
AGGAACGTACAATCCGAAGAAACTCTTCGGCGTGACCACCCTGGACGTGA
TCCGCGCCAACACTTTTGTGGCCGAGAACCAGGGCACCGACGTCCTCCAG
ACCAACGTCACGGTCGTGGGGGGGCACGCAGGGACGACCATCCTTCCCCT
CCTCTCCCAAGTCAAGGGCGCCTCCTTCACCCCCGATGCCCTGGCAGCCC
TGACGCACCGGATCCAGTTCGGCGGGGACGAGGTGGTAAAGGCGAAGGAC
GGGGCAGGCTCGGCCACCCTGTCAATGGCCTACGCCGGCTACTTGTTCAC
GGCGAAGCTCCTCCAGGCGTTGAAGGGGGAGAAAGATGTGGTGGCCTGTG
CCTTCGTCGAGAACACTTTGACCGCCGCGCCTTTCTTCGCGGCCCCCGTT
ACCCTGGGCAAAGAGGGCGTGGAGAAAGTGCACGCGTTGGGCAGCCTGTC
GGCGATGGAGCAGGAGGCTCTGGAGAAGGCCCTGCCGGACTTGCTGGCGC
AGGCGAAGAAGGGGGTGGAGTTTGTCCAGAACGCCAAGTGAGGGACGGGG
CGAGGCGGGGGGAGAGGGGTCCGGGAGTAGTCCCTGGTAGGGAGAAATTT
TTTGACGCGGTTACATGAGGGGAGCGAGGAGGGAGGGAGGGGAGGCGTGG
GACGGGATGCCGAGGGGATTTAGGGAAGAGAGGGAGTGCTAGGGGAGACA
GGAAGCCAGGAAGGGGGAGAAGGGAAGGACGACAACGCCCTCCGCGCCAG
GTCCCCCTTGCCGCCGTTTGCTCTCCACGGCGTCATTTTACCGTTTGGAT
CCCTTGTTGAATTTCTTTTAAATCCCTTTTTCCCTTTCGGAGGCTCGTTA
GGAATAAAGCAAGCATTGCTGTGCGATCCTCGCTCGCTCTTATTTTGTCA
CGCGCCGTCTCCGTGGACTTTCCCCTGCTCCCCTCCTTCCCGCCCTCCTC
CCCACCCTCCTTCCCGCCCTCCTTCCGCTCCTCCTATTCACAAATGTGCC
TGCTGCCCCTCTCCTTCCTTCACTCTATCTCCCCTCCC
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protein sequence of rna3197

>rna3197-protein ID=rna3197-protein|Name=rna3197|organism=Nannochloropsis gaditana|type=polypeptide|length=348bp
MVVNLRSLRVSTGAAGVARHLRYKAILSPLQNANKPTMDDFLGKLADTST
AWDEQQLHVLKSLALERSGLPSHARGLAWRFFLHVLPPTREGGASLARDK
LGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELT
REEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGL
ELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQ
GMHEVAAVLLYVLEAEGGGEGGREGKRVVSGTRMEEFQAPWRISLTRSTG
NMTSFSSSIASCWTWSPCTMWRRHPPLRPPPLPPPAPPPLFPPPRRPT
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mRNA from alignment at CM002460.1:977982..979345-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3197 ID=rna3197|Name=rna3197|organism=Nannochloropsis gaditana|type=mRNA|length=1364bp|location=Sequence derived from alignment at CM002460.1:977982..979345- (Nannochloropsis gaditana)
ATGGTTGTGAACTTGAGGTCTCTCCGTGTTTCGACCGGTGCCGCCGGAGT
GGCGCGACACTTGCGTTACAAAGCAATCCTTTCACCGCTTCAAAATGCAA
ACAAGTTATGACCTCCAGTTGCCACAGTACCGACAGGCATGCGTGAAGAC
GTGTGCATGCTTTTGTTTTGGGGACCTGTATAGTATTGAACGTGACGGAC
GTTGTCGACGTGTGCGTTCGCCAGAGGGCAACTTGCCCCTCCGTCCCCGT
TCATGACTTGCTCGTAGGAGTGTTTACACGCATCCCCACCAGCGTGTGTC
CACACCGGGCAGTTTCGAGACCCATTCAAAATAGGATTCATGTTCTCGCA
CCCTTATTTGTGGCCACCAGCCTGACTTTCCCCCGTCCCATCCACCTACC
CTGCACGCAGGGAGTTCCCAGGCCCACCATGGACGACTTCCTTGGAAAAT
TGGCAGACACTTCCACAGCCTGGGATGAGCAGCAATTGCACGTTTTAAAG
TCCCTGGCCCTGGAAAGGTCAGGTCTTCCATCGCACGCCCGGGGGCTGGC
GTGGCGTTTCTTTTTGCACGTCTTGCCTCCCACACGAGAGGGCGGGGCCT
CCTTGGCCAGAGATAAATTGGGGGAGTGGCCCGTACGGTTACAGGCAGCA
CGGCAACAATATGCGGACTGGAAGCAACAGCTGTATCCAGACTTTACTCG
TGTAAGCAAGGAGGGCGATGATGACCCGTTGTCCGCCTTGACGGCGGCCC
CGAAAGAGGAGCTGACGAGGGAGGAGGTTGAGGAAGGGAAAGACGGAGAA
GAGACAACGAAGGAGGGGAGCAAAGACAAGGAAGGACCGCTGAGGAGGGA
AGGAAGTAAGGCGAGGAAGCCAGGGGCCGGAGAGGGCGGAGCGTGGAGGA
GGTACTATGCGGGGTTGGAGCTGCTGGAGGAAGTTCGGCGGGATTTGTCA
CGCTTGTACCCTCTGGGCGTGGACGAGGCGCATTTTACGCGTCCGAAGGC
TCAAGAAATGCTTCTGGCCGTTCTATTTGTGTGGGCGAGCTTGCACCAGG
CCACGAGCTACCGGCAGGGCATGCACGAAGTGGCGGCGGTGTTGTTGTAC
GTGTTGGAGGCCGAAGGGGGGGGGGAGGGCGGGAGGGAGGGCAAGCGGGT
GGTGTCCGGGACGAGAATGGAGGAGTTTCAGGCCCCATGGCGTATATCAC
TGACCCGCAGTACCGGGAACATGACCTCTTTCTCCTCTTCGATCGCCTCA
TGCTGGACTTGGAGCCCTTGTACTATGTGGAGGCGCCACCCTCCCCTCCG
ACCTCCGCCCCTTCCTCCGCCGGCACCTCCACCACTTTTTCCTCCTCCTC
GCCGGCCCACCTAG
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Coding sequence (CDS) from alignment at CM002460.1:977982..979345-

>rna3197 ID=rna3197|Name=rna3197|organism=Nannochloropsis gaditana|type=CDS|length=2094bp|location=Sequence derived from alignment at CM002460.1:977982..979345- (Nannochloropsis gaditana)
GCCCACCATGGACGACTTCCTTGGAAAATTGGCAGACACTTCCACAGCCT
GGGATGAGCAGCAATTGCACGTTTTAAAGTCCCTGGCCCTGGAAAGGTCA
GGTCTTCCATCGCACGCCCGGGGGCTGGCGTGGCGTTTCTTTTTGCACGT
CTTGCCTCCCACACGAGAGGGCGGGGCCTCCTTGGCCAGAGATAAATTGG
GGGAGTGGCCCGTACGGTTACAGGCAGCACGGCAACAATATGCGGACTGG
AAGCAACAGCTGTATCCAGACTTTACTCGTGTAAGCAAGGAGGGCGATGA
TGACCCGTTGTCCGCCTTGACGGCGGCCCCGAAAGAGGAGCTGACGAGGG
AGGAGGTTGAGGAAGGGAAAGACGGAGAAGAGACAACGAAGGAGGGGAGC
AAAGACAAGGAAGGACCGCTGAGGAGGGAAGGAAGTAAGGCGAGGAAGCC
AGGGGCCGGAGAGGGCGGAGCGTGGAGGAGGTACTATGCGGGGTTGGAGC
TGCTGGAGGAAGTTCGGCGGGATTTGTCACGCTTGTACCCTCTGGGCGTG
GACGAGGCGCATTTTACGCGTCCGAAGGCTCAAGAAATGCTTCTGGCCGT
TCTATTTGTGTGGGCGAGCTTGCACCAGGCCACGAGCTACCGGCAGGGCA
TGCACGAAGTGGCGGCGGTGTTGTTGTACGTGTTGGAGGCCGAAGGGGGG
GGGGAGGGCGGGAGGGAGGGCAAGCGGGTGGTGTCCGGGACGAGAATGGA
GGAGTTTCAGGCCCCATGGCGTATATCACTGACCCGCAGTACCGGGAACA
TGACCTCTTTCTCCTCTTCGATCGCCTCATGCTGGACTTGGAGCCCTTGT
ACTATGTGGAGGCGCCACCCTCCCCTCCGACCTCCGCCCCTTCCTCCGCC
GGCACCTCCACCACTTTTTCCTCCTCCTCGCCGGCCCACCTAGATGGTTG
TGAACTTGAGGTCTCTCCGTGTTTCGACCGGTGCCGCCGGAGTGGCGCGA
CACTTGCGTTACAAAGCAATCCTTTCACCGCTTCAAAATGCAAACAAGCC
CACCATGGACGACTTCCTTGGAAAATTGGCAGACACTTCCACAGCCTGGG
ATGAGCAGCAATTGCACGTTTTAAAGTCCCTGGCCCTGGAAAGGTCAGGT
CTTCCATCGCACGCCCGGGGGCTGGCGTGGCGTTTCTTTTTGCACGTCTT
GCCTCCCACACGAGAGGGCGGGGCCTCCTTGGCCAGAGATAAATTGGGGG
AGTGGCCCGTACGGTTACAGGCAGCACGGCAACAATATGCGGACTGGAAG
CAACAGCTGTATCCAGACTTTACTCGTGTAAGCAAGGAGGGCGATGATGA
CCCGTTGTCCGCCTTGACGGCGGCCCCGAAAGAGGAGCTGACGAGGGAGG
AGGTTGAGGAAGGGAAAGACGGAGAAGAGACAACGAAGGAGGGGAGCAAA
GACAAGGAAGGACCGCTGAGGAGGGAAGGAAGTAAGGCGAGGAAGCCAGG
GGCCGGAGAGGGCGGAGCGTGGAGGAGGTACTATGCGGGGTTGGAGCTGC
TGGAGGAAGTTCGGCGGGATTTGTCACGCTTGTACCCTCTGGGCGTGGAC
GAGGCGCATTTTACGCGTCCGAAGGCTCAAGAAATGCTTCTGGCCGTTCT
ATTTGTGTGGGCGAGCTTGCACCAGGCCACGAGCTACCGGCAGGGCATGC
ACGAAGTGGCGGCGGTGTTGTTGTACGTGTTGGAGGCCGAAGGGGGGGGG
GAGGGCGGGAGGGAGGGCAAGCGGGTGGTGTCCGGGACGAGAATGGAGGA
GTTTCAGGCCCCATGGCGTATATCACTGACCCGCAGTACCGGGAACATGA
CCTCTTTCTCCTCTTCGATCGCCTCATGCTGGACTTGGAGCCCTTGTACT
ATGTGGAGGCGCCACCCTCCCCTCCGACCTCCGCCCCTTCCTCCGCCGGC
ACCTCCACCACTTTTTCCTCCTCCTCGCCGGCCCACCTAGATGGTTGTGA
ACTTGAGGTCTCTCCGTGTTTCGACCGGTGCCGCCGGAGTGGCGCGACAC
TTGCGTTACAAAGCAATCCTTTCACCGCTTCAAAATGCAAACAA
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Synonyms
Publications