EWM27482.1, cds3189 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|585109743|gb|EWM27482.1| (Rab-GTPase-TBC domain protein [Nannochloropsis gaditana]) HSP 1 Score: 702.975 bits (1813), Expect = 0.000e+0 Identity = 348/348 (100.00%), Postives = 348/348 (100.00%), Query Frame = 0
Query: 1 MVVNLRSLRVSTGAAGVARHLRYKAILSPLQNANKPTMDDFLGKLADTSTAWDEQQLHVLKSLALERSGLPSHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGEGGREGKRVVSGTRMEEFQAPWRISLTRSTGNMTSFSSSIASCWTWSPCTMWRRHPPLRPPPLPPPAPPPLFPPPRRPT 348
MVVNLRSLRVSTGAAGVARHLRYKAILSPLQNANKPTMDDFLGKLADTSTAWDEQQLHVLKSLALERSGLPSHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGEGGREGKRVVSGTRMEEFQAPWRISLTRSTGNMTSFSSSIASCWTWSPCTMWRRHPPLRPPPLPPPAPPPLFPPPRRPT
Sbjct: 1 MVVNLRSLRVSTGAAGVARHLRYKAILSPLQNANKPTMDDFLGKLADTSTAWDEQQLHVLKSLALERSGLPSHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGEGGREGKRVVSGTRMEEFQAPWRISLTRSTGNMTSFSSSIASCWTWSPCTMWRRHPPLRPPPLPPPAPPPLFPPPRRPT 348
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|953501867|emb|CEG36798.1| (alpha- [Plasmopara halstedii]) HSP 1 Score: 77.411 bits (189), Expect = 6.886e-12 Identity = 49/156 (31.41%), Postives = 67/156 (42.95%), Query Frame = 0
Query: 108 LQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVL 263
L A R++Y KQ + ++ G +DPL+ALTA L G +W +Y++ L+EE+ DL RL+P G +E F P L VLFVW LH +YRQGMH+V AV+LY
Sbjct: 19 LTAQRERYERLKQHM---VFQIDAAGSNDPLTALTATKNSAL--------------------------------------GRSSSWSQYFSDETLIEEINTDLDRLFPAG-NENFFQNPLYLSTLRHVLFVWCRLHPDVAYRQGMHDVVAVVLYAF 132
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1173932756|gb|OQR84668.1| (alpha-1,3-mannosyltransferase [Achlya hypogyna]) HSP 1 Score: 77.0258 bits (188), Expect = 9.484e-12 Identity = 47/124 (37.90%), Postives = 65/124 (52.42%), Query Frame = 0
Query: 149 LTREEVEEGKDGEETTKEGSKDKEGPLRREGSKARKPGAGEGGA-WRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAEGGGEG 271
L E V+ + ETT+E + K G + P + E G W + + L+ E++ DL RLYP G + RP+ +L VLFVW H A SYRQGMH++ AVLLY + GG+G
Sbjct: 15 LRVEHVDLARKAYETTREQLQPKAG------ASNHHPLSDESGNPWHQVFEDEPLVREIKTDLDRLYPQGNEMFFQERPELMGILRNVLFVWCKQHPAVSYRQGMHDLVAVLLYAV----GGDG 128
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1035902094|gb|OAY31694.1| (hypothetical protein MANES_14G132800 [Manihot esculenta]) HSP 1 Score: 76.2554 bits (186), Expect = 1.176e-11 Identity = 64/230 (27.83%), Postives = 104/230 (45.22%), Query Frame = 0
Query: 44 KLADTSTAWDEQQLHVLKSLALERSGLPSHA--RGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREG-SKARKP-GAGEGGAWRRYYAGLELLEEVRRDLSRLYP---LGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
K +D ++++++ K + +GLP RG W+ L LPP+R+ W L RQ+YA K++L P S L A + L +E+ DG GPL+R G S P G+ AW +Y+ E+ +++ RDL R +P ++ F+R K ++ + +L ++A L+ A Y QGM+EV A + YV A+
Sbjct: 112 KRSDIEHELSQKEINLEKLRRIASTGLPEGGGLRGTTWKLLLGYLPPSRDL-----------WEKELTENRQKYAKLKEELLSS-----------P-SELNAVNNDVLNSDELNAEGDGG-----------GPLKRHGVSHEDHPLSVGKSSAWHQYFQHTEIADQIDRDLQRTHPNIKFFSGDSSFSR-KNRDAMRNILLLFAKLNPAIRYVQGMNEVLAPIFYVFSAD 306
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1150677076|ref|XP_020275253.1| (TBC1 domain family member 5 homolog B-like [Asparagus officinalis]) HSP 1 Score: 75.485 bits (184), Expect = 3.136e-11 Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = 0
Query: 192 AWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
WRRY+ EL + V +DLSRLYP E +F P Q ML +L VW HQ YRQGMHE+ A LLYVL +
Sbjct: 96 TWRRYFKNAELEKLVDQDLSRLYP--EHEDYFQTPACQAMLRRILLVWCLRHQEYGYRQGMHELLAPLLYVLHVD 168
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1141998609|gb|ONK79425.1| (uncharacterized protein A4U43_C01F6240 [Asparagus officinalis]) HSP 1 Score: 74.7146 bits (182), Expect = 5.550e-11 Identity = 38/75 (50.67%), Postives = 45/75 (60.00%), Query Frame = 0
Query: 192 AWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
WRRY+ EL + V +DLSRLYP E +F P Q ML +L VW HQ YRQGMHE+ A LLYVL +
Sbjct: 96 TWRRYFKNAELEKLVDQDLSRLYP--EHEDYFQTPACQAMLRRILLVWCLRHQEYGYRQGMHELLAPLLYVLHVD 168
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|326526553|dbj|BAJ97293.1| (predicted protein [Hordeum vulgare subsp. vulgare]) HSP 1 Score: 73.9442 bits (180), Expect = 6.257e-11 Identity = 63/228 (27.63%), Postives = 103/228 (45.18%), Query Frame = 0
Query: 45 LADTSTAWDEQQLHVLKSLALERSGLP----SHARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPL-RREGSKARKP-GAGEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
LAD A ++ +++ + L G+P + R L W+ L LP R WP L+ R QY+ +K + + P E+L R +EE K + KE + ++ G L R E + P G W +Y+ E+LE++ RD+ R +P D++ F+ QE L +L +++ L+ + Y QGM+EV A L YVL+ +
Sbjct: 88 LADFKAALSKKVVNMGELRRLACLGVPDGGGTDVRPLVWKLLLGYLPTER-----------SLWPYELEKKRSQYSAYKDEFLLN-------------------PSEKLRR--IEESKLSRK--KELTGERNGLLPRSEVTNEEHPLSFGRSSLWNQYFQESEILEQIDRDVKRTHP---DKSFFSAKSNQESLRRILIIYSRLYPSVRYVQGMNEVLAPLFYVLKND 278
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1214710391|gb|OWZ21486.1| (Alpha-1,3-mannosyltransferase [Phytophthora megakarya]) HSP 1 Score: 73.559 bits (179), Expect = 1.322e-10 Identity = 35/76 (46.05%), Postives = 45/76 (59.21%), Query Frame = 0
Query: 188 GEGGAWRRYYAGLELLEEVRRDLSRLYPLGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVL 263
+ G+W +Y+ LLEE+ DL RLYP G +E+ F L VLFVW LH +YRQGMH+V AV+LY
Sbjct: 53 AKDGSWTQYFTDESLLEEINTDLERLYPAG-NESFFQNELYMTTLRHVLFVWCRLHPDVAYRQGMHDVVAVVLYAF 127
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|743816231|ref|XP_011020119.1| (PREDICTED: TBC1 domain family member 13-like isoform X2 [Populus euphratica]) HSP 1 Score: 71.2478 bits (173), Expect = 3.959e-10 Identity = 63/233 (27.04%), Postives = 103/233 (44.21%), Query Frame = 0
Query: 44 KLADTSTAWDEQQLHVLKSLALERSGLPSHA--RGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLY---PDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEGSKDKEGPLRREG-SKARKP-GAGEGGAWRRYYAGLELLEEVRRDLSRLYP---LGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
K +D + ++++++ K + G+P R AW+ L L P+ + W L RQ+YA K++L ++TRV + A+ +A E + EG D GPL+R G S P G AW Y+ E+ E++ RDL R +P E+ F++ K +E + +L ++A L+ A Y QGM+EV A + YV +
Sbjct: 99 KRSDLEYEFSQKEINLEKVKRIASMGVPDGGGLRATAWKLLLGYLSPSHDV-----------WEKELTENRQKYAKLKEELLLSPSEYTRVKAD-------AMISA-----------------ELSSEG--DVAGPLKRRGISHGDHPLSVGMASAWHHYFKHTEIAEQIDRDLQRTHPDMKFFSGESSFSK-KNREAMRNILLLFAKLNPAICYVQGMNEVLAPIFYVFSTD 293
BLAST of EWM27482.1 vs. NCBI_GenBank
Match: gi|1098840257|ref|XP_018826814.1| (PREDICTED: TBC1 domain family member 13-like isoform X1 [Juglans regia]) HSP 1 Score: 71.633 bits (174), Expect = 3.960e-10 Identity = 63/222 (28.38%), Postives = 101/222 (45.50%), Query Frame = 0
Query: 54 EQQLHVLKSLALERSGLPS--HARGLAWRFFLHVLPPTREGGASLARDKLGEWPVRLQAARQQYADWKQQLYPDFTRVSKEGDDDPLSALTAAPKEELTREEVEEGKDGEETTKEG--SKDKEGPLRREG-SKARKP-GAGEGGAWRRYYAGLELLEEVRRDLSRLYP---LGVDEAHFTRPKAQEMLLAVLFVWASLHQATSYRQGMHEVAAVLLYVLEAE 266
E L L+ +A +GLP R +AW+ L LPP+R+ W L R++YA+ K++L +P E R KDG ++ E D +GPL+R+G S P G+ W Y+ E++E++ RDL R +P ++ F+R K +E + +L ++A L+ A Y QGM+EV A + +V +
Sbjct: 112 EINLEKLQRIA--STGLPDGGRLRAMAWKLLLGYLPPSRDL-----------WEKELTENRKKYANLKEELL-------------------QSPSEFTKR------KDGTFSSDEQHVDSDMDGPLQRQGISPEDHPLSLGKASVWHEYFQHTEIVEQIDRDLQRTHPDMKFFSGDSPFSR-KNKEAMRNILILFAKLNPAIRYVQGMNEVLAPIYFVCTTD 294 The following BLAST results are available for this feature:
BLAST of EWM27482.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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