rna3189, rna3189 (mRNA) Nannochloropsis gaditana

Overview
Namerna3189
Unique Namerna3189
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3129
Alignment locationCM002460.1:961381..962565 -

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Properties
Property NameValue
ProductRibosomal protein L15e
Orig transcript idgnl|cribi|Naga_100099g18.8540.mrna
Orig protein idgnl|cribi|Naga_100099g18.8540
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:961381..962565 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100099g18gene3066Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27504.1cds3181Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3189rna3189-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3189 ID=rna3189|Name=rna3189|organism=Nannochloropsis gaditana|type=mRNA|length=3129bp
GGGATTACCAACACCACCTAAAGCGCTTCCATGGACGGTAATTTGTGGTT
TCTTCATTTACAAAATCTTGGTATACTTTCTCAATTGTCATTTTTTGCGG
TCCACTCGCGTGTTATGGACCATCAGCGCACATTTCTGGGGCTTCCCGGG
GCGTATGCGCAGTTGGACAGGCGCTGATTGTATGTCTGATGCTGGGAAGT
ATGCGGGCTTTGTTCGATTGTTCAGGCTTGATCACGCAACCAAAGGCTTG
AAAATGTACACTATACGGCCCCAATTCAAGCCTCTTTTCACCCTTGGAGT
TCCTATGTGACTCTGAGAAATGTGCCCACCCGCTAACATAGTTGCCCGCG
TTCCTTTCGTGTTTAGTAGCAAGGTATTTACGAGGCGGCCGTATCATATG
CTGTAAAGCAGCATTTCTTCATCACTCCTACCTCCCGATCCCTTCAAAAA
TGTGCCTCTTCATAGAAAAGGAGCTCCATGATGCATGTAGAGTGTAAAAG
TGATACTCAACGTGTCGCGCGTGAAGTGCTGTCCTACGCTCCTGCAGTGG
ACCTCAGTAGGACTGGCCATGTCATGCCATGGATGTTTCGCGACATCCCC
CGTTATCCCCGCCTATCTTTTTAAGATTTGTGCGTGTGAGCCTCACAGGA
TGACAATCCAGGCGCACTGTGCTCGCAAGTGTGGAAGTCTTTGCCTTGCA
TGAGACAAGGCTATGTAAATATTGTCGGTACCAAAGTGACGGGCATGTCT
AACGCGCTCGACGCTTTCAACTTCATCCTGAACCCCATCATCCATCACAG
ATCTAGTGTATTACAAGGCTATCATCAGCCTTCACCTCAAAGAATCATGG
GCATCGATTTCACCGACAAAATTGTGAAACGGCGCATCATCACCGGTTCG
GTGCTCAGTCTCCTCCTCGCGCTATCCATTGCCATGACCTGTTTTGACGC
GAAGAAGGGGGGCGCCTACATTATGGCCGACGACGATCCATCCATCATCA
ACTACAACGCAGCCTTGCCCACCGAAGAAGAGCCCCAGCTTCTGCCCGGA
GATATTGCCTGGATGCTGGCCGCCACCGCCCTGGTCCTTCTCATGACCCC
GGGACTGGCCTTCTTCTACGGCGGCATGGTCCGCGCCAAGAACGTGATCT
CCACCCTCCTCATGTCCTTCGTGGCCATGGGCGTGATCACCATGCTCTGG
ACGGTGGTGGGCTTCTCCCTCGCCTTCGGGGATTCGCTCTCGGGCTACAT
GGGGAACCCTGCCACTTTCCCTTTCTACAACAACGTCGGCGCGGCTGCTG
ACACGAATTTCTCCAACACCATTCCCCTAGCGCTCTACTCGCTCTTCCAG
CTCAAGTTCGCCATCATCACCCCGGCCCTGATCTCGGGCGCCATTGCCGA
GCGCGTGCGCTTCACTTCCTACATCATCTTCATCGTCCTCTTCTCCCTCT
TCGTCTACTGCCCTCTGGCGCACATGACCTGGCACCCTGACGGCTTGCTC
GCCAAGGCGGGTATCCTGGACTTTGCGGGCGGCACGGTCGTGCACATGTC
CTCCGGGTATGCGGCCTTGGTCGGATCCATCATTTTGGGACCCCGCAAGA
ACGTGGGTAAGATGCAACCAGCCAACATTCCCTTCGTCATGCTCGGCACC
GCCCTTCTCTGGTTTGGCTGGTTCGGCTTCAATGCTGGGTCCGCCCTTGC
CGCCGATCCCGTTGCCGTCCAGGCCTTCCTGACCACCAATACCGCCACGG
CCGCCGCCATGCTCACCTGGGTATTCGTGGACCACCTCAGGGGCAGCAAA
TCGACGGCCATGGGCGCCTGCGTAGGCGCCGTCGTCGGCTTGGTCGTGAT
CACCCCCGGGGCGGGCTTCGTGACCGTAGGGGGTGCGGCCTGCATGGGCA
TGATCGGTGCTTTCATTTCCAACGTGGTGGCCCATTACTTCAACACAAAG
GCGAACATCGACGACACCCTGGACGTCTGGCCTTGCCACGGATTGGGAGG
GACGGTGGGGATGGTCTTGACCTCCTGCTTTGCCACAGTCAGCGCGAATG
CGGACGGCGCGGACGGGTTGTTCTACGGCGACGCCACCCTCTTCTGGCAC
CACCTGGTGGCGCTCGTCTGCCTGATCCCTTACATCATGGGCATGTCCTT
CCTCTGCTACCAGATCACCAACCTGATCTACCCCTTGCGCGTGGGGGAGA
AGAGCGAGAAACTGGGCCTGGACATGTCCCAGCACAAAGAATCGATCATG
GTCCACGACGAGGAGGAGGACGACGTGGTCAAGCCCGCGGATGACCTGGA
TGCCTCCAGCCGCATTGAGCTCGGCTCCATGTAAGGACGGGGCCCCTAAA
AGTGTCCTTGATGCTGGTGTTACGCAGATGTGGGCGCAGCAGACCGCGGA
GCCTGCGCGATAATTACAAACAGCCTTTTAAATAAAATATGCATGCATGT
GAGCAGAGTCTCCCGGACTGGAGGAGGAAATACAACGTGGTACAATCGAA
GGTTTTGACCACCTTCGACGCCAAAATGGGCATTTTCGGGAGGAAATATA
GATAAGGATACATAAGCAAGTAATGTTGCGAATTTGGACCCGGTGTACGG
TGTATAAATGCCGTGCGTGGGTGTCGGGAGAGATAGGACAGGCCATCACA
AGAAGGAGACCAAGTGAATACGTTATTACCCAGCCCAGAGGCTGCGATGT
GGGAAAAGAGGAAGGGCTATTTTGTTGAAATGGGCTCAGGAGGGGGGTGG
TCGGAGGGTGGGGAAGAAAACGGCCGCGGGGACGGGGCAGAGGCATCTGA
TCGAAAGAACCAAATACTTCATCCGCAGCGACACTCCACCGGGCCTGATC
CTCTCCATCCCCCTTGATTTCTGACATTGCCATTGTGCCAATTACCCTTG
CCGAGTGGATATGCAGGTCCTAGCGCCTTCCCTGGCGCTTCTCCTTATCA
TGCAAGAACATCAAAGAAATTGTTGAAGAGCATGAAGAACATGATCACGC
GTGTCGCTTTTTACTTTTGCATCCCTCTCCGTCACGCTTTCAGCGGTAGG
TAGTTTCCCGTCTCTCCCTGGTACGTTTCGACACAAGGCAGAACCAAGCA
TCAATTTGCCATCGACGACCCGGCAACCA
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protein sequence of rna3189

>rna3189-protein ID=rna3189-protein|Name=rna3189|organism=Nannochloropsis gaditana|type=polypeptide|length=205bp
MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHR
LGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKS
KAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNW
IVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTIS
LKRYR
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mRNA from alignment at CM002460.1:961381..962565-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3189 ID=rna3189|Name=rna3189|organism=Nannochloropsis gaditana|type=mRNA|length=1185bp|location=Sequence derived from alignment at CM002460.1:961381..962565- (Nannochloropsis gaditana)
CTGATTATGGCATGAAAGTGGTGTTTGTTTGGGTGTATGCTGTAGGATTG
TTGGCGGACGGGCATATTTTGTCGTGCGTCTGGAGTTGAATGTTTTGAAT
GACAGAATGACGGACAGGATTGTGGTGAATTTTGCTTGAGAGTTACTGCT
CACCACGTTTTCTTCAGTCGACCCTCTCCCCCTGTGTACTGTAAGTTTTC
AATTACACTGACATCTCATTCACCTTATGCCCACTATCACCTGCTTTATA
AAATTTATGGCATACAGTTTTGCAGTAGCATGGGGGCCTACAAATTTTTG
GAAGAGCTTTGGCGCAAGAAGCAGGCAGACCTGCTTCGTTTCCTGCTGCG
TGTGCGTGCTTGGGAGTACCGCCAACTGCCTAAAATCTACCGCATGAACC
GCCCTACTCGCACAGACAAAGCCCACCGTCTGGGCTACAAGGCCAAGCAG
GGTTTTGTCGTCTATCGTGTAGCTGTACGACGGGGTGGACGCAAACGCCC
CAACCCCAAGGGGATTGTGTACGGAAAGCCCAAAAACCAGGGGATTAATC
AGCTCAAGTGGGTCCGCAATTTGAAGAGTAAGGCAGAGGAGCGGGCAGGC
CGCAAGCTAGGCGGACTTCGCGTGCTGAATTCGTACTGGGTAAATCAAGA
CGCCACGTACAAGTACTACGAGGTCATCCTGGTGGACCCGCAGCACAAGG
CTATCCGCCGGGATGCTCGGGTGAATTGGATTGTCAACCCCACACACAAG
CACCGTGAGCTCCGAGGCCTGACTTCTTCCGGCCGGTCTTCCCGAGGACT
ACGCAAACGTGGTCACCGCGCGCACAACATCATCGGTTCCTCCGCCTACG
GGTCCTGGAAACGCCGCAACACTATCTCCCTCAAGAGGTACCGTTAAACC
AAGGGGGGAAATCGAGGCGATGGTCAAACTGCTGGTATGCGTTGTGTGTT
TTTTCTTTGGTGGTTGGCTGGTGGAGCGCTCTTCCTCGGAATGCGAGCCG
CAGGAGGCGACGCGTCGGGAAACTTTCCTGCAGTGTCGATGGGTGGTTGC
CGGGTCGTCGATGGCAAATTGATGCTTGGTTCTGCCTTGTGTCGAAACGT
ACCAGGGAGAGACGGGAAACTACCTACCGCTGAAAGCGTGACGGAGAGGG
ATGCAAAAGTAAAAAGCGACACGCGTGATCATGTT
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Coding sequence (CDS) from alignment at CM002460.1:961381..962565-

>rna3189 ID=rna3189|Name=rna3189|organism=Nannochloropsis gaditana|type=CDS|length=618bp|location=Sequence derived from alignment at CM002460.1:961381..962565- (Nannochloropsis gaditana)
ATGGGGGCCTACAAATTTTTGGAAGAGCTTTGGCGCAAGAAGCAGGCAGA
CCTGCTTCGTTTCCTGCTGCGTGTGCGTGCTTGGGAGTACCGCCAACTGC
CTAAAATCTACCGCATGAACCGCCCTACTCGCACAGACAAAGCCCACCGT
CTGGGCTACAAGGCCAAGCAGGGTTTTGTCGTCTATCGTGTAGCTGTACG
ACGGGGTGGACGCAAACGCCCCAACCCCAAGGGGATTGTGTACGGAAAGC
CCAAAAACCAGGGGATTAATCAGCTCAAGTGGGTCCGCAATTTGAAGAGT
AAGGCAGAGGAGCGGGCAGGCCGCAAGCTAGGCGGACTTCGCGTGCTGAA
TTCGTACTGGGTAAATCAAGACGCCACGTACAAGTACTACGAGGTCATCC
TGGTGGACCCGCAGCACAAGGCTATCCGCCGGGATGCTCGGGTGAATTGG
ATTGTCAACCCCACACACAAGCACCGTGAGCTCCGAGGCCTGACTTCTTC
CGGCCGGTCTTCCCGAGGACTACGCAAACGTGGTCACCGCGCGCACAACA
TCATCGGTTCCTCCGCCTACGGGTCCTGGAAACGCCGCAACACTATCTCC
CTCAAGAGGTACCGTTAA
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Synonyms
Publications