EWM27504.1, cds3181 (CDS) Nannochloropsis gaditana

Overview
NameEWM27504.1
Unique Namecds3181
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:961669..962286 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27504.1
ProductRibosomal protein L15e
Orig transcript idgnl|cribi|Naga_100099g18.8540.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:961669..962286 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR012678Ribosomal_L23/L15e_core_dom
IPR000439Ribosomal_L15e
IPR024794Rbsml_L15e_core_dom
Homology
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|585109768|gb|EWM27504.1| (Ribosomal protein L15e [Nannochloropsis gaditana])

HSP 1 Score: 412.149 bits (1058), Expect = 1.538e-145
Identity = 205/205 (100.00%), Postives = 205/205 (100.00%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR
Sbjct:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|676386677|ref|XP_009036617.1| (hypothetical protein AURANDRAFT_60075 [Aureococcus anophagefferens] >gi|323452746|gb|EGB08619.1| hypothetical protein AURANDRAFT_60075 [Aureococcus anophagefferens])

HSP 1 Score: 327.02 bits (837), Expect = 7.960e-112
Identity = 154/205 (75.12%), Postives = 179/205 (87.32%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK+LEE+W++KQ D+LR+L+R+RAW+YRQ  K+ R  RPTR DKAH+LGYKAK+G+V+YR AVRRGGRKRPN KGIVYGKPK+QGINQLK+ RNL+S AEER G+K G LRVLNSYWVNQDATYKYYEVI VDP H  IR D R+NWIVNPTHKHRE RGLTS+GR SRGLRK+GHRA+NIIGSS   +WKRRN +SL+RYR
Sbjct:    1 MGAYKYLEEMWKRKQCDVLRYLMRIRAWQYRQQTKVCRCTRPTRHDKAHKLGYKAKEGYVIYRSAVRRGGRKRPNGKGIVYGKPKHQGINQLKFARNLQSVAEERVGKKCGNLRVLNSYWVNQDATYKYYEVIAVDPSHAVIRNDPRINWIVNPTHKHRECRGLTSAGRKSRGLRKQGHRANNIIGSSRRAAWKRRNNLSLRRYR 205          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|299472638|emb|CBN78290.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 318.546 bits (815), Expect = 1.549e-108
Identity = 152/205 (74.15%), Postives = 176/205 (85.85%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK+LEELWRKKQ+D+LRF+LRVRAWEYRQLP++ +++ PTRTDKAHRLGYKAKQG+ + RVAVRRGGRKRPN KGIVYGKPK+ GIN++K VRNL+S AEER G K   +RVLNSYWVNQDAT+KYYEVI VDP H AIR D R+ WI  P  KHRE RGLTS+GR  RGLRK+GHRA+N+IGSS   +WKRRNT+SLKRYR
Sbjct:    1 MGAYKYLEELWRKKQSDVLRFVLRVRAWEYRQLPRVCKVSHPTRTDKAHRLGYKAKQGYTMVRVAVRRGGRKRPNAKGIVYGKPKHHGINKIKAVRNLRSVAEERVGAKFTNMRVLNSYWVNQDATFKYYEVITVDPSHMAIRNDPRIQWITKPVMKHRECRGLTSAGRQHRGLRKKGHRANNLIGSSRRAAWKRRNTLSLKRYR 205          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|673047297|ref|XP_008877609.1| (60S ribosomal protein [Aphanomyces invadans] >gi|574466773|gb|ETV93800.1| 60S ribosomal protein [Aphanomyces invadans])

HSP 1 Score: 315.849 bits (808), Expect = 1.689e-107
Identity = 155/205 (75.61%), Postives = 178/205 (86.83%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK++ ELW++KQ+D+LRFLLRVRAW+YRQLP +YR+ RP+R DKA R+GYKAKQG+V  RVAVRRGGRKRPN KGIVYGKPK+ GINQLK VRNL+S AEERAG K   LRVLNSYWVNQDATYKY+EVILVD  HKAIRRDAR+NWIVN  HK RE RGLTS+GR +RGLR+RGH+A+ IIGSS   +WKRRNT SL+RYR
Sbjct:    1 MGAYKYIAELWKRKQSDVLRFLLRVRAWQYRQLPVVYRLTRPSRLDKARRVGYKAKQGYVAVRVAVRRGGRKRPNSKGIVYGKPKHHGINQLKDVRNLRSIAEERAGAKFTNLRVLNSYWVNQDATYKYFEVILVDHSHKAIRRDARINWIVNAVHKRREKRGLTSAGRQARGLRQRGHKANKIIGSSRRQNWKRRNTTSLRRYR 205          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|325186477|emb|CCA20982.1| (60S ribosomal protein L151 putative [Albugo laibachii Nc14])

HSP 1 Score: 315.079 bits (806), Expect = 4.023e-107
Identity = 153/205 (74.63%), Postives = 176/205 (85.85%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK+LEELW++KQ+D+LRFL+RVRAWEYRQ P IYR  RPTR DKA RLGYKAKQG+V+ R AVRRGGRKRPN KGIVYGKPK+ GINQLK+ RNL+S AEERAG +   LRVLNSYW+NQDATYKY+EVI+VD  HK IR+D R+NWIVNPTHK RE RGLTS+GR  RGLRKRGHRA+ I G S+  +WKRRNT+SL+RYR
Sbjct:    1 MGAYKYLEELWKRKQSDVLRFLIRVRAWEYRQQPVIYRTTRPTRIDKARRLGYKAKQGYVIVRAAVRRGGRKRPNSKGIVYGKPKHHGINQLKFARNLRSVAEERAGARFTNLRVLNSYWINQDATYKYFEVIMVDHSHKVIRQDPRINWIVNPTHKRREKRGLTSAGRQGRGLRKRGHRANKIQGGSSRHNWKRRNTLSLRRYR 205          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|1026757678|gb|OAE19886.1| (hypothetical protein AXG93_1130s1390 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 314.694 bits (805), Expect = 5.214e-107
Identity = 155/205 (75.61%), Postives = 176/205 (85.85%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK++EELWRKKQ+D+LRFLLRVR WE+RQLP I R+ RP+R DKA RLGYKAKQG+VVYR+ VRRGGRKRP  KGIVYGKPKNQGI QLK+ RNL+S AEERAGRKLGGLRVLNSYW+NQD+TYKYYEVILVDP H AIR D R+NWIVNP HKHRELRGLTS+G+  RGLR RGH  +N    S + +WKR NT+SL+RYR
Sbjct:    1 MGAYKYIEELWRKKQSDVLRFLLRVRCWEFRQLPGIVRITRPSRPDKARRLGYKAKQGYVVYRIRVRRGGRKRPVSKGIVYGKPKNQGITQLKFQRNLRSVAEERAGRKLGGLRVLNSYWINQDSTYKYYEVILVDPAHNAIRNDPRINWIVNPVHKHRELRGLTSTGKKHRGLRGRGH-LYNKSRPSVHATWKRHNTLSLRRYR 204          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|953494098|emb|CEG43692.1| (60s ribosomal protein [Plasmopara halstedii])

HSP 1 Score: 313.538 bits (802), Expect = 1.709e-106
Identity = 154/205 (75.12%), Postives = 177/205 (86.34%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK+LEELW++KQ+D+LRFLLRVRAWEYRQLP I+R+  PTR DKA RLGYKAKQGFV+ RVAVRRGGRKRPN KGIVYGKPK+ GIN+LK+ RNL+S AEERAG K   LRVLNSYWVNQDAT+KY+E+I+VD  HK IRRD R+NWIVN  HK R+ RGLTS+GR  RGLRKRGHRA+ IIGSS   +WKRRNT+SL+RYR
Sbjct:    1 MGAYKYLEELWKRKQSDVLRFLLRVRAWEYRQLPVIHRVTGPTRLDKARRLGYKAKQGFVIVRVAVRRGGRKRPNSKGIVYGKPKHHGINELKFERNLRSVAEERAGNKFTNLRVLNSYWVNQDATHKYFEIIMVDHSHKVIRRDPRINWIVNAVHKGRQQRGLTSAGRQGRGLRKRGHRANKIIGSSFRQNWKRRNTLSLRRYR 205          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|635370884|emb|CCI40961.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 312.768 bits (800), Expect = 3.192e-106
Identity = 153/205 (74.63%), Postives = 176/205 (85.85%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK+LEELW++KQ+D+LRFL+RVRAWEYRQ P IYR  RPTR DKA RLGYKAKQG+V+ R AVRRGGRKRPN KGIVYGKPK+ GINQLK+ RNL+S AEERAG +   LRVLNSYW+NQDATYKYYEVI+VD  HK IR+D R++WIVNPTHK RE RGLTS+GR  RGLRKRGHRA+ I G S+  +WKRRNT+SL+RYR
Sbjct:    1 MGAYKYLEELWKRKQSDVLRFLIRVRAWEYRQQPVIYRAPRPTRIDKARRLGYKAKQGYVIVRAAVRRGGRKRPNSKGIVYGKPKHHGINQLKFARNLRSVAEERAGARFTNLRVLNSYWINQDATYKYYEVIMVDHSHKVIRQDPRISWIVNPTHKRREKRGLTSAGRQGRGLRKRGHRANKIQGGSSRHNWKRRNTLSLRRYR 205          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|301119533|ref|XP_002907494.1| (60S ribosomal protein L15-1 [Phytophthora infestans T30-4] >gi|262106006|gb|EEY64058.1| 60S ribosomal protein L15-1 [Phytophthora infestans T30-4])

HSP 1 Score: 312.768 bits (800), Expect = 3.803e-106
Identity = 153/205 (74.63%), Postives = 176/205 (85.85%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK+LEELW++KQ+D+LRFLLRVRAWEYRQLP I+R+  PTR DKA RLGYKAKQG+V+ RVAVRRGGRKRPN KGIVYGKPK+ GIN+LK+ RNL+S AEERAG K   LRVLNSYWVNQDATYKY+E+I+VD  HK IRRD R+NWI N  HK R+ RGLTS+GR  RGLRKRGHRA+ IIGSS   +WKRRNT+SL+RYR
Sbjct:    1 MGAYKYLEELWKRKQSDVLRFLLRVRAWEYRQLPVIHRVTGPTRVDKARRLGYKAKQGYVIVRVAVRRGGRKRPNSKGIVYGKPKHHGINELKFERNLRSVAEERAGNKFTNLRVLNSYWVNQDATYKYFEIIMVDHSHKTIRRDPRINWIANAVHKGRQQRGLTSAGRQGRGLRKRGHRANKIIGSSFRQNWKRRNTLSLRRYR 205          
BLAST of EWM27504.1 vs. NCBI_GenBank
Match: gi|698823183|ref|XP_009844620.1| (60S ribosomal protein [Aphanomyces astaci] >gi|574100284|gb|ETV65867.1| 60S ribosomal protein [Aphanomyces astaci])

HSP 1 Score: 312.383 bits (799), Expect = 3.838e-106
Identity = 153/205 (74.63%), Postives = 177/205 (86.34%), Query Frame = 0
Query:    1 MGAYKFLEELWRKKQADLLRFLLRVRAWEYRQLPKIYRMNRPTRTDKAHRLGYKAKQGFVVYRVAVRRGGRKRPNPKGIVYGKPKNQGINQLKWVRNLKSKAEERAGRKLGGLRVLNSYWVNQDATYKYYEVILVDPQHKAIRRDARVNWIVNPTHKHRELRGLTSSGRSSRGLRKRGHRAHNIIGSSAYGSWKRRNTISLKRYR 205
            MGAYK++ ELW++KQ+D+LRFLLRVRAW+YRQLP +YR+ RP+R DKA R+GYKAKQG+V  RVAVRRGGRKRPN KGIVYGKPK+ GINQLK VRNL+S AEERAG K   LRVLNSYWVNQDATYKY+EVIL+D  HKAIRRDAR+NWIVN  HK RE RGLTS+GR +RGLR+RGH+A+ I GSS   +WKRRNT SL+RYR
Sbjct:    1 MGAYKYIAELWKRKQSDVLRFLLRVRAWQYRQLPVVYRLTRPSRLDKARRVGYKAKQGYVAVRVAVRRGGRKRPNSKGIVYGKPKHHGINQLKDVRNLRSIAEERAGAKFTNLRVLNSYWVNQDATYKYFEVILIDHSHKAIRRDARINWIVNAVHKRREKRGLTSAGRQARGLRQRGHKANKIQGSSRRQNWKRRNTTSLRRYR 205          
The following BLAST results are available for this feature:
BLAST of EWM27504.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109768|gb|EWM27504.1|1.538e-145100.00Ribosomal protein L15e [Nannochloropsis gaditana][more]
gi|676386677|ref|XP_009036617.1|7.960e-11275.12hypothetical protein AURANDRAFT_60075 [Aureococcus... [more]
gi|299472638|emb|CBN78290.1|1.549e-10874.15conserved unknown protein [Ectocarpus siliculosus][more]
gi|673047297|ref|XP_008877609.1|1.689e-10775.6160S ribosomal protein [Aphanomyces invadans] >gi|5... [more]
gi|325186477|emb|CCA20982.1|4.023e-10774.6360S ribosomal protein L151 putative [Albugo laibac... [more]
gi|1026757678|gb|OAE19886.1|5.214e-10775.61hypothetical protein AXG93_1130s1390 [Marchantia p... [more]
gi|953494098|emb|CEG43692.1|1.709e-10675.1260s ribosomal protein [Plasmopara halstedii][more]
gi|635370884|emb|CCI40961.1|3.192e-10674.63unnamed protein product [Albugo candida][more]
gi|301119533|ref|XP_002907494.1|3.803e-10674.6360S ribosomal protein L15-1 [Phytophthora infestan... [more]
gi|698823183|ref|XP_009844620.1|3.838e-10674.6360S ribosomal protein [Aphanomyces astaci] >gi|574... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3189rna3189Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications