EWM27495.1, cds3175 (CDS) Nannochloropsis gaditana

Overview
NameEWM27495.1
Unique Namecds3175
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:938836..938891 -
Alignment locationCM002460.1:937896..938384 -
Alignment locationCM002460.1:937397..937796 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27495.1
Productprotein rer1a
Orig transcript idgnl|cribi|Naga_100099g9.8531.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:938836..938891 -
CM002460.1supercontigCM002460.1:937896..938384 -
CM002460.1supercontigCM002460.1:937397..937796 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005794Golgi apparatus
GO:0016020membrane
GO:0016021integral component of membrane
Vocabulary: INTERPRO
TermDefinition
IPR004932Rer1
Homology
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|585109759|gb|EWM27495.1| (protein rer1a [Nannochloropsis gaditana])

HSP 1 Score: 652.514 bits (1682), Expect = 0.000e+0
Identity = 314/314 (100.00%), Postives = 314/314 (100.00%), Query Frame = 0
Query:    1 MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRATPRQAARVRRGLLPISLPACQRKDLCRLSRLRPAISVREIALKGRIQRGHGGAPRDGWKTLCRVHDVEKMGKVAHAPQGWPPRDKARGVKQREGEKGRRGDGRAPGLQLSKNHTTKCAAKGHLNPTLVHTAPKMC 314
            MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRATPRQAARVRRGLLPISLPACQRKDLCRLSRLRPAISVREIALKGRIQRGHGGAPRDGWKTLCRVHDVEKMGKVAHAPQGWPPRDKARGVKQREGEKGRRGDGRAPGLQLSKNHTTKCAAKGHLNPTLVHTAPKMC
Sbjct:    1 MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRATPRQAARVRRGLLPISLPACQRKDLCRLSRLRPAISVREIALKGRIQRGHGGAPRDGWKTLCRVHDVEKMGKVAHAPQGWPPRDKARGVKQREGEKGRRGDGRAPGLQLSKNHTTKCAAKGHLNPTLVHTAPKMC 314          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|553179382|ref|XP_005852692.1| (protein rer1a [Nannochloropsis gaditana CCMP526] >gi|422295841|gb|EKU23140.1| protein rer1a [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 380.563 bits (976), Expect = 1.742e-131
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRATPR 182
            MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRATPR
Sbjct:    1 MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRATPR 182          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|698792056|ref|XP_009829060.1| (hypothetical protein H257_05786 [Aphanomyces astaci] >gi|574115717|gb|ETV81202.1| hypothetical protein H257_05786 [Aphanomyces astaci])

HSP 1 Score: 239.195 bits (609), Expect = 1.352e-75
Identity = 109/174 (62.64%), Postives = 139/174 (79.89%), Query Frame = 0
Query:    6 ESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRA 179
            E + +E+   S+ RKWQH+LDQST++V  RW+  A +LT Y VRV+Y+N + I+TYGLGIYLLN FIGFLSPQ+DPE+EGP+LP+  SEE+RPF+RR+PEFKFWY   KAT++A  +TFFE F+VPV+WPILL+YF+ LF LTMKRQI+HM KH YVPWS+ K  Y G G K +
Sbjct:   17 EPAFLERVFASFGRKWQHVLDQSTIYVYGRWIASAVLLTSYIVRVYYLNAFHIITYGLGIYLLNLFIGFLSPQIDPETEGPVLPSTNSEEFRPFSRRVPEFKFWYTSTKATFMATLLTFFEVFNVPVFWPILLMYFILLFTLTMKRQIKHMWKHNYVPWSSGKQVYKGKGGKDS 190          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|1173959947|gb|OQS06120.1| (hypothetical protein THRCLA_01817 [Thraustotheca clavata])

HSP 1 Score: 234.958 bits (598), Expect = 3.690e-74
Identity = 106/174 (60.92%), Postives = 137/174 (78.74%), Query Frame = 0
Query:    6 ESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRA 179
            E + +E+   S  RKWQH+LDQST+HV  RWV+   +L++Y +RV  IN + I+TYGLGIYLLN FIGFLSPQ+DPE+EGP+LP+ +SEE+RPF+RR+PEFKFWY   KAT+ A  MTFFE F++PV+WPILL+YF+ LF LTMKRQI+HM KH YVPW++ K  Y G  +K +
Sbjct:   11 EPAFLERVASSVGRKWQHVLDQSTIHVTGRWVLSLVLLSIYLIRVLTINAFHIITYGLGIYLLNLFIGFLSPQIDPETEGPVLPSSKSEEFRPFSRRVPEFKFWYATTKATFYALCMTFFEIFNIPVFWPILLMYFIVLFTLTMKRQIKHMWKHNYVPWNHGKQVYKGKPQKDS 184          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|813118794|ref|XP_012196064.1| (hypothetical protein SPRG_02123 [Saprolegnia parasitica CBS 223.65] >gi|641539505|gb|KDO33314.1| hypothetical protein SPRG_02123 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 234.958 bits (598), Expect = 5.361e-74
Identity = 110/184 (59.78%), Postives = 138/184 (75.00%), Query Frame = 0
Query:    2 EAGGES------SVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRA 179
             AGG+S        +E+   S  RKWQH+LDQST+HV  RWV  A +L +Y  RV  IN + I+TYGLGIYLLN FIGFLSPQ+DPE+EGP+LP+ +SEE+RPF+RR+PEFKFWY   KAT+ A  MTFFE F++PV+WPILL+YF+ LF LTMKRQI+HM KH YVPW++ K  Y G  +K +
Sbjct:    7 SAGGDSRSLTEPVFLERVAASVGRKWQHVLDQSTIHVTGRWVFSAVLLVVYLARVLTINSFHIITYGLGIYLLNLFIGFLSPQIDPETEGPVLPSSKSEEFRPFSRRVPEFKFWYATTKATFYALLMTFFEIFNIPVFWPILLMYFIVLFTLTMKRQIKHMWKHNYVPWNHGKQVYKGKPQKDS 190          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|669159136|ref|XP_008615130.1| (hypothetical protein SDRG_10892 [Saprolegnia diclina VS20] >gi|530733047|gb|EQC31289.1| hypothetical protein SDRG_10892 [Saprolegnia diclina VS20])

HSP 1 Score: 232.261 bits (591), Expect = 5.630e-73
Identity = 108/184 (58.70%), Postives = 138/184 (75.00%), Query Frame = 0
Query:    2 EAGGES------SVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRA 179
             AGG+S        +E+   S  RKWQH+LDQST+HV  RWV  A +L +Y  RV  +N + I+TYGLGIYLLN FIGFLSPQ+DPE++GP+LP+ +SEE+RPF+RR+PEFKFWY   KAT+ A  MTFFE F++PV+WPILL+YF+ LF LTMKRQI+HM KH YVPW++ K  Y G  +K +
Sbjct:    8 SAGGDSRSLTEPVFLERVAASVGRKWQHVLDQSTIHVTGRWVFSAVLLVVYLARVLTLNSFHIITYGLGIYLLNLFIGFLSPQIDPETDGPVLPSSKSEEFRPFSRRVPEFKFWYATTKATFYALFMTFFEIFNIPVFWPILLMYFIVLFTLTMKRQIKHMWKHNYVPWNHGKQVYKGKPQKDS 191          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|1173943779|gb|OQR92589.1| (protein RER1A [Achlya hypogyna])

HSP 1 Score: 230.72 bits (587), Expect = 3.598e-72
Identity = 103/161 (63.98%), Postives = 129/161 (80.12%), Query Frame = 0
Query:   19 RKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRA 179
            RKWQH+LDQST+HV  RW+  A ++ +Y  RV  IN + IVTYGLGIYLLN FIGFLSPQ+DPE+EGP+LP+ +SEE+RPF+RR+PEFKFWY   KAT+ A  MTFFE F++PV+WPILL+YF+ LF LTMKRQI+HM KH YVPW++ K  Y G  +K +
Sbjct:   46 RKWQHLLDQSTIHVTGRWIFSAVLIFVYLARVLSINSFHIVTYGLGIYLLNLFIGFLSPQIDPETEGPVLPSAKSEEFRPFSRRVPEFKFWYATTKATFYALLMTFFEIFNIPVFWPILLMYFIVLFTLTMKRQIKHMWKHNYVPWNHGKQVYKGKAQKDS 206          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|673043775|ref|XP_008875848.1| (hypothetical protein H310_11074 [Aphanomyces invadans] >gi|574468637|gb|ETV95655.1| hypothetical protein H310_11074 [Aphanomyces invadans])

HSP 1 Score: 227.639 bits (579), Expect = 4.517e-71
Identity = 104/161 (64.60%), Postives = 131/161 (81.37%), Query Frame = 0
Query:    6 ESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSN 166
            E + +E+   S  RKWQH+LDQST++V  RW   A +LT+Y +RV+Y+N + I+TYGLGIYLLN FIGFLSPQ+DPE+EGP+LP+  SEE+RPF+RR+PEFKFWY   KAT+IA  +TFFE F+VPV+WPILL+YF+ LF LTMKRQI+HM KH YVPWS 
Sbjct:   17 EPAFLERVFASVGRKWQHLLDQSTIYVYGRWAASALLLTVYILRVYYLNAFHIITYGLGIYLLNLFIGFLSPQIDPETEGPVLPSTSSEEFRPFSRRVPEFKFWYSATKATFIATLLTFFEVFNVPVFWPILLMYFILLFTLTMKRQIKHMWKHNYVPWST 177          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|922868291|gb|KOO34716.1| (rer1a protein [Chrysochromulina sp. CCMP291])

HSP 1 Score: 223.787 bits (569), Expect = 1.023e-69
Identity = 104/184 (56.52%), Postives = 135/184 (73.37%), Query Frame = 0
Query:    2 EAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRATPRQAA 185
            E   E   V +F     RKWQH++DQS  H   RW++   ++ +Y +RV++++GW+I+TYGLGIY+LN  IGFLSPQ+DPE+EGP LPT   +E+RPF RRLPEFKFWY   KA  +AF MTFF  F++PV+WPILLLYF++LF LTMKRQI+HM+K+RYVP+S  K RY G  +  A PR  A
Sbjct:    4 EVEMEEGQVGKFQSMVARKWQHLMDQSAPHTVPRWILTLLIVIIYCLRVYFLHGWYIITYGLGIYVLNLLIGFLSPQVDPEAEGPTLPTTRDDEFRPFIRRLPEFKFWYSLTKAFCVAFVMTFFSVFNIPVFWPILLLYFIALFALTMKRQIKHMVKYRYVPFSLGKTRYQGRDDD-APPRGRA 186          
BLAST of EWM27495.1 vs. NCBI_GenBank
Match: gi|168011853|ref|XP_001758617.1| (predicted protein [Physcomitrella patens] >gi|162690227|gb|EDQ76595.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 224.172 bits (570), Expect = 1.082e-69
Identity = 106/186 (56.99%), Postives = 139/186 (74.73%), Query Frame = 0
Query:    4 GGESSVVEQFVVSWQ----RKWQHILDQSTVHVGLRWVIFAAMLTLYAVRVFYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFARRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMKRQIRHMIKHRYVPWSNSKARYAGAGEKRATPRQAA 185
            G E       ++ W+    R++Q+ LD+ST H G+RWV    +  +Y +R +Y+ G++IVTYGLGIYLLN  IGFLSPQ+DPESEGP LPT+ S+E++PF RRLPEFKFWY   KA  +AFT+TFF  FDVPV+WPILLLY++ LF+LTMKRQIRHMIK+RYVP+S  K RY G   ++ +P +A+
Sbjct:    6 GEEGDASSNALLKWRNQMGRRFQYYLDKSTPHAGMRWVATLVVAAIYCLRAYYVKGFYIVTYGLGIYLLNLLIGFLSPQVDPESEGPALPTKGSDEFKPFIRRLPEFKFWYAFTKALIVAFTLTFFSIFDVPVFWPILLLYWIVLFVLTMKRQIRHMIKYRYVPFSLGKQRYTG---RKPSPEKAS 188          
The following BLAST results are available for this feature:
BLAST of EWM27495.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109759|gb|EWM27495.1|0.000e+0100.00protein rer1a [Nannochloropsis gaditana][more]
gi|553179382|ref|XP_005852692.1|1.742e-131100.00protein rer1a [Nannochloropsis gaditana CCMP526] >... [more]
gi|698792056|ref|XP_009829060.1|1.352e-7562.64hypothetical protein H257_05786 [Aphanomyces astac... [more]
gi|1173959947|gb|OQS06120.1|3.690e-7460.92hypothetical protein THRCLA_01817 [Thraustotheca c... [more]
gi|813118794|ref|XP_012196064.1|5.361e-7459.78hypothetical protein SPRG_02123 [Saprolegnia paras... [more]
gi|669159136|ref|XP_008615130.1|5.630e-7358.70hypothetical protein SDRG_10892 [Saprolegnia dicli... [more]
gi|1173943779|gb|OQR92589.1|3.598e-7263.98protein RER1A [Achlya hypogyna][more]
gi|673043775|ref|XP_008875848.1|4.517e-7164.60hypothetical protein H310_11074 [Aphanomyces invad... [more]
gi|922868291|gb|KOO34716.1|1.023e-6956.52rer1a protein [Chrysochromulina sp. CCMP291][more]
gi|168011853|ref|XP_001758617.1|1.082e-6956.99predicted protein [Physcomitrella patens] >gi|1626... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3183rna3183Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications