rna3183, rna3183 (mRNA) Nannochloropsis gaditana

Overview
Namerna3183
Unique Namerna3183
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1503
Alignment locationCM002460.1:937397..938891 -

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Properties
Property NameValue
Productprotein rer1a
Orig transcript idgnl|cribi|Naga_100099g9.8531.mrna
Orig protein idgnl|cribi|Naga_100099g9.8531
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:937397..938891 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100099g9gene3060Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3183rna3183-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27495.1cds3175Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3183 ID=rna3183|Name=rna3183|organism=Nannochloropsis gaditana|type=mRNA|length=1503bp
AGGCCAGGCGCAGGCGCGCGGTTTCATGACAAATATAGCTGCCCCATATC
GACACAGTCTTATCTCTCGTTCCCCGCACGTAGAAATATTGGTCGTGGGC
AACAATATTCAACTCCTACACCTTTGAGTGGGAGTCTTTCTCAGTGGCTG
AGAACCACTTCTCACTTGAAGTTGGCTGATAATGGCAAGCAGCATGAGCA
GCAGAAGCGCCATTGCTGTCCCTCCCACGTCCTACATATCAATCCGTCGC
TCCTCCCTCTTGCTTATTACTTTGGGCTCATTCGCATTGGGCACTCTTAT
TGCGAACATGACTTCCCGGTCCTGGCGGAGGGTACAACGCTACATAGACT
CCCGGCGTAGCAATGGAGGGCGCCGGCCAGTGATCGTTTGCTTTGGAGAC
AGTATCACACAGGGAGGGCACAGCCCCGAACACGTGGGGTGGGTGGGTCG
GTTGGAGGATTTTTATTGCCGGAAAGCGGACGTTTTAAATCGAGGTTTCA
GCGGGTACAACACAGACTGGTTGTCTCGGATGTTGGTGGACCTCTTTTCC
CGTATGTTCAGACGGAGACCACCTGTATTGGTGACGATTTGGCTTGGTGC
CAACGATGCTACGGTAGAAAGCTCACGGCAGCACGTGCCCCTGTGGAAAT
ACAAGGAAAATTTGGAGAAAATGGTCCGGTTTTTCAAGGGCTTGGGTCGG
CGTGATCGTCAAGTGGCCATCCTCCTCGTCACTCCCCCCCCTTTGCACGA
AGGGAAATGGCTTGCATTCCTCCGCTCGTCGTGCCCAACCTCCCTCCTCG
ACCGGTCCTTCGCGCGCACTGCTTCCTACGCCCTGGCAGCTCGAGAGGTG
GGGCAGGCCATAAAAGTCCCGGTAGTGGACATACACTCCTCGTTTGGGGT
CCAGATCGAGGAGGCGGTGGGAGGGGAGGGAATGCCCCAAGACGAGACAT
ACGCCAGCTTTCTCTCAGACGGCTTGCACCTGAATGAGAAGGGGAACAGA
AGGGCCTTTGAAGCGGTGAGAGACAGTATCAAGCACCATTTCCCCTGGCT
GGATCCCATCAATCTGGAGACGCAGGCCCCGGGGTGGGAGAGCTTACGGT
CGCTGTACTTGGACGAAGCCGAGGGCAGGGGGGAGAAAGGGGAGGGCGGT
ACCGTGCCTTTGTACAGTAGTAAGAGCAGCGTGATTTTCAATGCGTACTA
GGCGTGCTGGAGAGAAAGTAACGGGACAAAGGTCAGAGACGGCAGGGCAC
CCACGACGTTCAAGCTGGTGAGCTCGACTCATGAGCAGTCCTAGGGATCG
GGGTATCGTGATCCCTCAATAAATAAATTTAACACATTTTTGGCGCTGTG
TGCACCAGCGTTGGGTTAAGATGACCTTTTGCAGCGCACTTTGTGGTATG
GTTCTTTGAAAGCTGCAAGCCTGGCGCTCGACCATCTCCTCGCCTTCCTT
TCTCGCCTTCTCTCTGCTTTACGCCCCTCGCTTTATCCCGGGGCGGCCAC
CCC
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protein sequence of rna3183

>rna3183-protein ID=rna3183-protein|Name=rna3183|organism=Nannochloropsis gaditana|type=polypeptide|length=314bp
MEAGGESSVVEQFVVSWQRKWQHILDQSTVHVGLRWVIFAAMLTLYAVRV
FYINGWFIVTYGLGIYLLNNFIGFLSPQMDPESEGPLLPTQESEEYRPFA
RRLPEFKFWYQCAKATWIAFTMTFFEFFDVPVYWPILLLYFVSLFILTMK
RQIRHMIKHRYVPWSNSKARYAGAGEKRATPRQAARVRRGLLPISLPACQ
RKDLCRLSRLRPAISVREIALKGRIQRGHGGAPRDGWKTLCRVHDVEKMG
KVAHAPQGWPPRDKARGVKQREGEKGRRGDGRAPGLQLSKNHTTKCAAKG
HLNPTLVHTAPKMC
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mRNA from alignment at CM002460.1:937397..938891-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3183 ID=rna3183|Name=rna3183|organism=Nannochloropsis gaditana|type=mRNA|length=1495bp|location=Sequence derived from alignment at CM002460.1:937397..938891- (Nannochloropsis gaditana)
ATGGAAGCGGGTGGAGAGTCAAGCGTTGTGGAGCAATTTGTGGTCTCTTG
GCAAAGGTGCGTGATCGAATCAAAGCAGGCGTTACCTGCCGTGTCAAAAG
GTGGGGAGTCTTCCTTAAAGGGAGCAAAGAGAGCCGGAAGAACCCTGGCA
GGCTCCGACAGCGTGAACACGTATCATTATTGTATGGTTTTTGCTGACTC
TGGGTGCCGGTGGTGGGGCCTCCCGAGGCGAAATGCATGCAGGGTACATG
CCCTTCCACCAGACACTCGTGCCCGCAAGTAATGTCAAACAGGTCCTAAT
GACCAGTGGATATTGTGGCAGATGATTCGCATGTTGGATTCCTGAAGTGG
GAGCCTCTGCATGTAGTGCCGACCCGAGAGTGTCGGCATGTCCACGCATT
GATGGGGTATTCCCAGAGCCCTCCAACTTCTTTCGCGGCGGCTGAAGCGT
TCTCTCAACGCACAACTGCCTTGAAAAACAACTCGCCCCTTTCCATATCT
CTGACAGGAAATGGCAGCACATACTGGACCAATCGACCGTCCATGTGGGC
CTTCGATGGGTCATCTTTGCGGCGATGCTCACGCTCTACGCCGTGCGGGT
CTTCTACATCAACGGATGGTTCATCGTCACCTACGGACTTGGCATCTATC
TTCTCAACAATTTCATCGGCTTCCTCTCACCGCAAATGGATCCAGAATCG
GAAGGCCCGTTGCTCCCTACGCAGGAGTCGGAGGAATACCGCCCGTTTGC
CCGCCGTTTGCCCGAATTTAAATTTTGGTACCAGTGCGCCAAGGCGACGT
GGATCGCGTTTACCATGACATTTTTTGAATTTTTCGACGTGCCTGTATAC
TGGCCCATTCTTCTCCTGTATTTCGTAAGCCTCTTCATCTTGACGATGAA
GAGGCAGATCCGGCATATGATCAAGCATCGCTACGTGCCGTGGAGTAATT
CCAAGGCCCGGTATGCGGGGGCGGGGGAGAAGAGAGCAACGCCACGGTGA
TCGGCTGGCCAGGGGGGGGGGCTAGGAAGGACAGGAGGGAAGGGCATGAA
TGTACCATAGAGGGCCCGGGGTATAGAGGGGCCATGGCGGCGAAGCCAGG
CCGCGCGAGTGAGGCGTGGCCTTCTCCCTATCTCCTTGCCTGCGTGCCAG
CGGAAAGACCTTTGTCGACTCTCAAGATTGAGGCCAGCAATATCTGTCCG
GGAAATTGCTTTGAAAGGGCGCATCCAAAGGGGCCACGGAGGAGCACCAA
GGGATGGATGGAAGACGCTCTGTCGTGTTCACGATGTGGAAAAGATGGGG
AAGGTGGCACATGCTCCACAGGGGTGGCCGCCCCGGGATAAAGCGAGGGG
CGTAAAGCAGAGAGAAGGCGAGAAAGGAAGGCGAGGAGATGGTCGAGCGC
CAGGCTTGCAGCTTTCAAAGAACCATACCACAAAGTGCGCTGCAAAAGGT
CATCTTAACCCAACGCTGGTGCACACAGCGCCAAAAATGTGTTAA
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Coding sequence (CDS) from alignment at CM002460.1:937397..938891-

>rna3183 ID=rna3183|Name=rna3183|organism=Nannochloropsis gaditana|type=CDS|length=2835bp|location=Sequence derived from alignment at CM002460.1:937397..938891- (Nannochloropsis gaditana)
CCAGGCCGCGCGAGTGAGGCGTGGCCTTCTCCCTATCTCCTTGCCTGCGT
GCCAGCGGAAAGACCTTTGTCGACTCTCAAGATTGAGGCCAGCAATATCT
GTCCGGGAAATTGCTTTGAAAGGGCGCATCCAAAGGGGCCACGGAGGAGC
ACCAAGGGATGGATGGAAGACGCTCTGTCGTGTTCACGATGTGGAAAAGA
TGGGGAAGGTGGCACATGCTCCACAGGGGTGGCCGCCCCGGGATAAAGCG
AGGGGCGTAAAGCAGAGAGAAGGCGAGAAAGGAAGGCGAGGAGATGGTCG
AGCGCCAGGCTTGCAGCTTTCAAAGAACCATACCACAAAGTGCGCTGCAA
AAGGTCATCTTAACCCAACGCTGGTGCACACAGCGCCAAAAATGTGTTAA
GAAATGGCAGCACATACTGGACCAATCGACCGTCCATGTGGGCCTTCGAT
GGGTCATCTTTGCGGCGATGCTCACGCTCTACGCCGTGCGGGTCTTCTAC
ATCAACGGATGGTTCATCGTCACCTACGGACTTGGCATCTATCTTCTCAA
CAATTTCATCGGCTTCCTCTCACCGCAAATGGATCCAGAATCGGAAGGCC
CGTTGCTCCCTACGCAGGAGTCGGAGGAATACCGCCCGTTTGCCCGCCGT
TTGCCCGAATTTAAATTTTGGTACCAGTGCGCCAAGGCGACGTGGATCGC
GTTTACCATGACATTTTTTGAATTTTTCGACGTGCCTGTATACTGGCCCA
TTCTTCTCCTGTATTTCGTAAGCCTCTTCATCTTGACGATGAAGAGGCAG
ATCCGGCATATGATCAAGCATCGCTACGTGCCGTGGAGTAATTCCAAGGC
CCGGTATGCGGGGGCGGGGGAGAAGAGAGCAACGCCACGATGGAAGCGGG
TGGAGAGTCAAGCGTTGTGGAGCAATTTGTGGTCTCTTGGCAAAGCCAGG
CCGCGCGAGTGAGGCGTGGCCTTCTCCCTATCTCCTTGCCTGCGTGCCAG
CGGAAAGACCTTTGTCGACTCTCAAGATTGAGGCCAGCAATATCTGTCCG
GGAAATTGCTTTGAAAGGGCGCATCCAAAGGGGCCACGGAGGAGCACCAA
GGGATGGATGGAAGACGCTCTGTCGTGTTCACGATGTGGAAAAGATGGGG
AAGGTGGCACATGCTCCACAGGGGTGGCCGCCCCGGGATAAAGCGAGGGG
CGTAAAGCAGAGAGAAGGCGAGAAAGGAAGGCGAGGAGATGGTCGAGCGC
CAGGCTTGCAGCTTTCAAAGAACCATACCACAAAGTGCGCTGCAAAAGGT
CATCTTAACCCAACGCTGGTGCACACAGCGCCAAAAATGTGTTAAGAAAT
GGCAGCACATACTGGACCAATCGACCGTCCATGTGGGCCTTCGATGGGTC
ATCTTTGCGGCGATGCTCACGCTCTACGCCGTGCGGGTCTTCTACATCAA
CGGATGGTTCATCGTCACCTACGGACTTGGCATCTATCTTCTCAACAATT
TCATCGGCTTCCTCTCACCGCAAATGGATCCAGAATCGGAAGGCCCGTTG
CTCCCTACGCAGGAGTCGGAGGAATACCGCCCGTTTGCCCGCCGTTTGCC
CGAATTTAAATTTTGGTACCAGTGCGCCAAGGCGACGTGGATCGCGTTTA
CCATGACATTTTTTGAATTTTTCGACGTGCCTGTATACTGGCCCATTCTT
CTCCTGTATTTCGTAAGCCTCTTCATCTTGACGATGAAGAGGCAGATCCG
GCATATGATCAAGCATCGCTACGTGCCGTGGAGTAATTCCAAGGCCCGGT
ATGCGGGGGCGGGGGAGAAGAGAGCAACGCCACGATGGAAGCGGGTGGAG
AGTCAAGCGTTGTGGAGCAATTTGTGGTCTCTTGGCAAAGCCAGGCCGCG
CGAGTGAGGCGTGGCCTTCTCCCTATCTCCTTGCCTGCGTGCCAGCGGAA
AGACCTTTGTCGACTCTCAAGATTGAGGCCAGCAATATCTGTCCGGGAAA
TTGCTTTGAAAGGGCGCATCCAAAGGGGCCACGGAGGAGCACCAAGGGAT
GGATGGAAGACGCTCTGTCGTGTTCACGATGTGGAAAAGATGGGGAAGGT
GGCACATGCTCCACAGGGGTGGCCGCCCCGGGATAAAGCGAGGGGCGTAA
AGCAGAGAGAAGGCGAGAAAGGAAGGCGAGGAGATGGTCGAGCGCCAGGC
TTGCAGCTTTCAAAGAACCATACCACAAAGTGCGCTGCAAAAGGTCATCT
TAACCCAACGCTGGTGCACACAGCGCCAAAAATGTGTTAAGAAATGGCAG
CACATACTGGACCAATCGACCGTCCATGTGGGCCTTCGATGGGTCATCTT
TGCGGCGATGCTCACGCTCTACGCCGTGCGGGTCTTCTACATCAACGGAT
GGTTCATCGTCACCTACGGACTTGGCATCTATCTTCTCAACAATTTCATC
GGCTTCCTCTCACCGCAAATGGATCCAGAATCGGAAGGCCCGTTGCTCCC
TACGCAGGAGTCGGAGGAATACCGCCCGTTTGCCCGCCGTTTGCCCGAAT
TTAAATTTTGGTACCAGTGCGCCAAGGCGACGTGGATCGCGTTTACCATG
ACATTTTTTGAATTTTTCGACGTGCCTGTATACTGGCCCATTCTTCTCCT
GTATTTCGTAAGCCTCTTCATCTTGACGATGAAGAGGCAGATCCGGCATA
TGATCAAGCATCGCTACGTGCCGTGGAGTAATTCCAAGGCCCGGTATGCG
GGGGCGGGGGAGAAGAGAGCAACGCCACGATGGAAGCGGGTGGAGAGTCA
AGCGTTGTGGAGCAATTTGTGGTCTCTTGGCAAAG
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Synonyms
Publications