rna3172, rna3172 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3172
Unique Name	rna3172
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1425
Alignment location	CM002460.1:912538..914336 +

Link to JBrowse

Properties


Property Name	Value
Product	eukaryotic translation initiation factor 3 subunit e
Orig transcript id	gnl\|cribi\|Naga_100101g1.9063.mrna
Orig protein id	gnl\|cribi\|Naga_100101g1.9063
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:912538..914336 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100101g1	gene3049	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3172	rna3172-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27525.1	cds3164	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:912538..914336+
coding sequence from alignment at CM002460.1:912538..914336+

mRNA sequence

>rna3172 ID=rna3172|Name=rna3172|organism=Nannochloropsis gaditana|type=mRNA|length=1425bp
ATGGCAGCCGGGGCTACCAGTGGTCGCGGTGGTTTCGTGGGCCTGAACCT
GGTCTTGGCGGCGTTAACACTCGCAGTGTTTCTCAGCACCCGCCGCTTGA
AGCTTGCTCCTTCTCACGTTGTATTTTTAAACGCGCTCTCATGTGGAATA
TTGGTGGGTGCGGTGCTGGGCATAATATTACCGGAAGGGTTTGAAGCGCA
ACAGGCAGGTGGCAAAGGCAGAGAAGCAAGTGGCATTCCAATCCTTATTG
GGTACGCCTTCCAATTGCTGCTCGACAATGTGGGGACCGCCTGCCGGTCA
GGTCATCACCACCACTCGAGCGTCCTGTCGGGTCACCCGAAACACTCTCC
TTTGCCAGCAACACCAAGGGATACCGGCGAGTACGGGATGGAGGAGGACA
GCGAGCGCCTAGACAGCCTCACAGTGGAGGCTTCCACGGGCCGGGCTCAG
GAAGGCGGAAATGGACGCTTTCTGTCCGACTCGCGCCGCACCTCATCGGC
CTTGCGATCCCCTTGGTCGTCAGAAGATGAGAACATGGTGGAAATGACCT
CCGTGGAAGGGGTCCCGCCTGGCGTGCCGCCAACGACGAGGGCCTCGCAA
GCCCATTTCCCGCCGCCATCGACCAGCGCGGCTTGTCGGGGAGGAAGACA
ACCAGGCAGGAGCTCCAATAGCCCACTATACCCACGGGAAAGTCAAAGAG
ATCATTACAGACCGTCCCAGCGCACTTCCAAGGCCCGTGGTGATGGATCT
CTGCCTGCCCTCAGAGGACCCAGTGGTCCCACCCTGCTTGGGTCTGGCGA
CGGGGGCTCCCCCCAGCCCGCCTTTCTCGGCCTCCTCGTGCACTGCCTCG
CAGACGGGGTGGCTCTTGGTGCATCCTCCTTGGGGACGTCGTCTTTGCAG
CTCACTGTCTACCTTGCCTTGATGATTCACAAGCTCCCGGTTGCCTTTGC
GACAGGGACTCTCCTAGCCAAGTCTCTTTCCCCTAGAACCGGCCCCGGTA
CCCTGAGGTCTCCACATCAAGGCCTGGCGCAGACTCAGCTACTAGAGCAA
GAACAGGAGCAACAGCCATCAGAACAGGAACAGAGGGCCAAAAGTTTTTT
ATATCATGCGTTGGCCTTCTCTTTCGCATCGCCCTTGGCTGCTTTGTCAA
CGCATTTGATACTACGAGTTCAGCAAAGGCAACAAGCGAAAGAAAGAGCA
GAATCTCCCGATCATAACACCACGTTTGTGGGCTCGGGCCTTCTTTTCTC
TGCAGGCACCTTCTTGTACGTCTCTGTTGGTCATATCATGCCGGAGTTGT
TGCACTCCCATGAGCACGTGAGGAACACCTTTGTCACACGAGCGGTAGTC
CTGCTGCTGTTGATAATGGGAATGTTTGCTGTCCCCTTGCTTGCTCGTTT
GGCGCCAGATCATGGCTTTCGCTAG

protein sequence of rna3172

>rna3172-protein ID=rna3172-protein|Name=rna3172|organism=Nannochloropsis gaditana|type=polypeptide|length=499bp
MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLA
KTKNVDGQLRALEELQEDIPPELEAQQQANDEREEVLREAAGDALDMFSL
EDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA
YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAID
KHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYP
VTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPW
LLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQ
CLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRI
HQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRS
PSVYHQVLDRTERLASSTFRLGTDTQKIFGQTLGGYPDRGATGGRRGRP

mRNA from alignment at CM002460.1:912538..914336+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3172 ID=rna3172|Name=rna3172|organism=Nannochloropsis gaditana|type=mRNA|length=1799bp|location=Sequence derived from alignment at CM002460.1:912538..914336+ (Nannochloropsis gaditana)
ATGGCAGAGTACGATCTCACTCAGAAGATTGCCCCTTTTACCGACGTGCA
CTTTTTAGTCCAGTCGGATGGACCTCTTGATTTTCTCATCGAACAAGCTG
AGTACTATTCCTACGACGACGTCATGCGAGCGAAGCTGGCCCTCCTTGCC
AAGACTAAGAATGTGGACGGGCAACTACGTGCACTGGAGGAACTCCAGGA
AGACATCCCCCCCGAACTGGAGGCACAGCAGCAAGCAAACGATGAGCGGG
AAGAAGTGCTTCGGGAAGCCGCGGGGGATGCTTTGGATATGTTCAGCCTT
GAGGACATGACCACGATCAAAGAGTACGTCACCGCGGGCGCAACGGATCC
CGCCGAGAAATTGGAGATGAAAGAAAAGTTGCTTGCCGCCTTGCCCGCCT
ACTACGACTACGCAAAATTCAAGTACGAACGAGGGGAGTACGATGACGCG
TATTTGTTTTTGAACAATTACATTCAGGCCATTGGGGACAGAGCGGCTTT
TTCCACGGTTCGGTATTCGCACGCGCTCTGGGGTCGATTGGGGGCCGTGA
TCCTCACGCAGCAATGGCACCTGGTCAAAGATGCAGTGGAGGCGATCGAC
AAGCACATCATGACCGTGAAACGACGCGAGGACGGCGTGCCTCCCACGAT
GCCTTCGCCCTCCGACCCAGATCCGATTCGCTCCATGTCGGACCGGGAGA
AACTTCAGCTGCGGACGTGGGTGCTGCATTGGTGCCTCTTCGCCTACCCG
GTCACGCCCGACGAGGCCCGAAAGCGGGAGTCGGCGGGGGACAAGTGGGA
GAACATTTTAGAACTGATCTTCCCTGTCAACGACGAGAAGCAGGGGCCGG
GCAATGGCCCCGATCGATACCGGCAGGCGGTCCAGAACAATGCCCCCTGG
CTCCTGCGTTACGTCACGACGATGGTGATCCTGCACAAACGGCCCATGAG
CGAGCGGTTCCGGCGGAAGCAGGACGTGATCAAGGAGGTGATCTGGCTGA
TTGAACAGGAGGCCTACACTTACCAGGACCCGATCACGCAATTTCTCCAG
TGCCTGTACGTCCGCTTTGATTTCGACGGGGCGCAAGAGAAACTTCAAGC
CTGCTACCACGTGCTTCGCAACGACTACTTCCTCTCGGGGTGGGCGGACG
CGTTCTTGGTGGAAGCGCGTCAGTTGATATTCGAGACTTACTGCCGCATT
CACCAGAAGATCGATATCAACATGTTGGGGCAAAAGCTGGGCATGTCCCC
tgcggaggcggaaaaatGGATCGTGGATCTGATCTTGGATTCCAAGTTGG
TGGCGAAAATTGACTCCCGCGACAATTACGTGGAGATGAACACTCGGTCG
CCCTCTGTGTATCATCAGGTAAGGTagagaagggggcgggggcagtcGAC
GGCGTACCTTTTGGGGCGGTCTCGCCCGGTGCTTGCAGCTGGTGTGTCTA
TTGTTGCAAGGGCATGGTGAACGGCCGGCGATTCTCGCTGTATGGGAAGG
CCGGTACGCTGTATTTGGCGGGTCATCTACAGCGCtttgcccctttcctt
tctcccgctcTCATCGCGCTCACatgctttcccctccctccccctccccc
gcctggacGCAGGTACTGGACCGCACGGAGcgcctggcctcctccacctt
ccgaTTGGGCACGGATACGCAGAAGATTTTCGGGCAGACCCTAGGGGGCT
ACCCTGATAGGGGGGCAacaggggggagacgggggaggtcgaggcaaggg
gggagcaTTGAGGGAGAGCGACAACCGTCCTTGCGGGCACAGGCCTTGA

Coding sequence (CDS) from alignment at CM002460.1:912538..914336+

>rna3172 ID=rna3172|Name=rna3172|organism=Nannochloropsis gaditana|type=CDS|length=4500bp|location=Sequence derived from alignment at CM002460.1:912538..914336+ (Nannochloropsis gaditana)
ATGGCAGAGTACGATCTCACTCAGAAGATTGCCCCTTTTACCGACGTGCA
CTTTTTAGTCCAGTCGGATGGACCTCTTGATTTTCTCATCGAACAAGCTG
AGTACTATTCCTACGACGACGTCATGCGAGCGAAGCTGGCCCTCCTTGCC
AAGACTAAGAATGTGGACGGGCAACTACGTGCACTGGAGGAACTCCAGGA
AGACATCCCCCCCGAACTGGAGGCACAGCAGCAAGCAAACGATGAGCGGG
AAGAAGTGCTTCGGGAAGCCGCGGGGGATGCTTTGGATATGTTCAGCCTT
GAGGACATGACCACGATCAAAGAGTACGTCACCGCGGGCGCAACGGATCC
CGCCGAGAAATTGGAGATGAAAGAAAAGTTGCTTGCCGCCTTGCCCGCCT
ACTACGACTACGCAAAATTCAAGTACGAACGAGGGGAGTACGATGACGCG
TATTTGTTTTTGAACAATTACATTCAGGCCATTGGGGACAGAGCGGCTTT
TTCCACGGTTCGGTATTCGCACGCGCTCTGGGGTCGATTGGGGGCCGTGA
TCCTCACGCAGCAATGGCACCTGGTCAAAGATGCAGTGGAGGCGATCGAC
AAGCACATCATGACCGTGAAACGACGCGAGGACGGCGTGCCTCCCACGAT
GCCTTCGCCCTCCGACCCAGATCCGATTCGCTCCATGTCGGACCGGGAGA
AACTTCAGCTGCGGACGTGGGTGCTGCATTGGTGCCTCTTCGCCTACCCG
GTCACGCCCGACGAGGCCCGAAAGCGGGAGTCGGCGGGGGACAAGTGGGA
GAACATTTTAGAACTGATCTTCCCTGTCAACGACGAGAAGCAGGGGCCGG
GCAATGGCCCCGATCGATACCGGCAGGCGGTCCAGAACAATGCCCCCTGG
CTCCTGCGTTACGTCACGACGATGGTGATCCTGCACAAACGGCCCATGAG
CGAGCGGTTCCGGCGGAAGCAGGACGTGATCAAGGAGGTGATCTGGCTGA
TTGAACAGGAGGCCTACACTTACCAGGACCCGATCACGCAATTTCTCCAG
TGCCTGTACGTCCGCTTTGATTTCGACGGGGCGCAAGAGAAACTTCAAGC
CTGCTACCACGTGCTTCGCAACGACTACTTCCTCTCGGGGTGGGCGGACG
CGTTCTTGGTGGAAGCGCGTCAGTTGATATTCGAGACTTACTGCCGCATT
CACCAGAAGATCGATATCAACATGTTGGGGCAAAAGCTGGGCATGTCCCC
tgcggaggcggaaaaatGGATCGTGGATCTGATCTTGGATTCCAAGTTGG
TGGCGAAAATTGACTCCCGCGACAATTACGTGGAGATGAACACTCGGTCG
CCCTCTGTGTATCATCAGGTACTGGACCGCACGGAGcgcctggcctcctc
caccttccgaTTGGGCACGGATACGCAGAAGATTTTCGGGCAGACCCTAG
GGGGCTACCCTGATAGGGGGGCAacaggggggagacgggggagGCCTTGA
ATGGCAGAGTACGATCTCACTCAGAAGATTGCCCCTTTTACCGACGTGCA
CTTTTTAGTCCAGTCGGATGGACCTCTTGATTTTCTCATCGAACAAGCTG
AGTACTATTCCTACGACGACGTCATGCGAGCGAAGCTGGCCCTCCTTGCC
AAGACTAAGAATGTGGACGGGCAACTACGTGCACTGGAGGAACTCCAGGA
AGACATCCCCCCCGAACTGGAGGCACAGCAGCAAGCAAACGATGAGCGGG
AAGAAGTGCTTCGGGAAGCCGCGGGGGATGCTTTGGATATGTTCAGCCTT
GAGGACATGACCACGATCAAAGAGTACGTCACCGCGGGCGCAACGGATCC
CGCCGAGAAATTGGAGATGAAAGAAAAGTTGCTTGCCGCCTTGCCCGCCT
ACTACGACTACGCAAAATTCAAGTACGAACGAGGGGAGTACGATGACGCG
TATTTGTTTTTGAACAATTACATTCAGGCCATTGGGGACAGAGCGGCTTT
TTCCACGGTTCGGTATTCGCACGCGCTCTGGGGTCGATTGGGGGCCGTGA
TCCTCACGCAGCAATGGCACCTGGTCAAAGATGCAGTGGAGGCGATCGAC
AAGCACATCATGACCGTGAAACGACGCGAGGACGGCGTGCCTCCCACGAT
GCCTTCGCCCTCCGACCCAGATCCGATTCGCTCCATGTCGGACCGGGAGA
AACTTCAGCTGCGGACGTGGGTGCTGCATTGGTGCCTCTTCGCCTACCCG
GTCACGCCCGACGAGGCCCGAAAGCGGGAGTCGGCGGGGGACAAGTGGGA
GAACATTTTAGAACTGATCTTCCCTGTCAACGACGAGAAGCAGGGGCCGG
GCAATGGCCCCGATCGATACCGGCAGGCGGTCCAGAACAATGCCCCCTGG
CTCCTGCGTTACGTCACGACGATGGTGATCCTGCACAAACGGCCCATGAG
CGAGCGGTTCCGGCGGAAGCAGGACGTGATCAAGGAGGTGATCTGGCTGA
TTGAACAGGAGGCCTACACTTACCAGGACCCGATCACGCAATTTCTCCAG
TGCCTGTACGTCCGCTTTGATTTCGACGGGGCGCAAGAGAAACTTCAAGC
CTGCTACCACGTGCTTCGCAACGACTACTTCCTCTCGGGGTGGGCGGACG
CGTTCTTGGTGGAAGCGCGTCAGTTGATATTCGAGACTTACTGCCGCATT
CACCAGAAGATCGATATCAACATGTTGGGGCAAAAGCTGGGCATGTCCCC
tgcggaggcggaaaaatGGATCGTGGATCTGATCTTGGATTCCAAGTTGG
TGGCGAAAATTGACTCCCGCGACAATTACGTGGAGATGAACACTCGGTCG
CCCTCTGTGTATCATCAGGTACTGGACCGCACGGAGcgcctggcctcctc
caccttccgaTTGGGCACGGATACGCAGAAGATTTTCGGGCAGACCCTAG
GGGGCTACCCTGATAGGGGGGCAacaggggggagacgggggagGCCTTGA
ATGGCAGAGTACGATCTCACTCAGAAGATTGCCCCTTTTACCGACGTGCA
CTTTTTAGTCCAGTCGGATGGACCTCTTGATTTTCTCATCGAACAAGCTG
AGTACTATTCCTACGACGACGTCATGCGAGCGAAGCTGGCCCTCCTTGCC
AAGACTAAGAATGTGGACGGGCAACTACGTGCACTGGAGGAACTCCAGGA
AGACATCCCCCCCGAACTGGAGGCACAGCAGCAAGCAAACGATGAGCGGG
AAGAAGTGCTTCGGGAAGCCGCGGGGGATGCTTTGGATATGTTCAGCCTT
GAGGACATGACCACGATCAAAGAGTACGTCACCGCGGGCGCAACGGATCC
CGCCGAGAAATTGGAGATGAAAGAAAAGTTGCTTGCCGCCTTGCCCGCCT
ACTACGACTACGCAAAATTCAAGTACGAACGAGGGGAGTACGATGACGCG
TATTTGTTTTTGAACAATTACATTCAGGCCATTGGGGACAGAGCGGCTTT
TTCCACGGTTCGGTATTCGCACGCGCTCTGGGGTCGATTGGGGGCCGTGA
TCCTCACGCAGCAATGGCACCTGGTCAAAGATGCAGTGGAGGCGATCGAC
AAGCACATCATGACCGTGAAACGACGCGAGGACGGCGTGCCTCCCACGAT
GCCTTCGCCCTCCGACCCAGATCCGATTCGCTCCATGTCGGACCGGGAGA
AACTTCAGCTGCGGACGTGGGTGCTGCATTGGTGCCTCTTCGCCTACCCG
GTCACGCCCGACGAGGCCCGAAAGCGGGAGTCGGCGGGGGACAAGTGGGA
GAACATTTTAGAACTGATCTTCCCTGTCAACGACGAGAAGCAGGGGCCGG
GCAATGGCCCCGATCGATACCGGCAGGCGGTCCAGAACAATGCCCCCTGG
CTCCTGCGTTACGTCACGACGATGGTGATCCTGCACAAACGGCCCATGAG
CGAGCGGTTCCGGCGGAAGCAGGACGTGATCAAGGAGGTGATCTGGCTGA
TTGAACAGGAGGCCTACACTTACCAGGACCCGATCACGCAATTTCTCCAG
TGCCTGTACGTCCGCTTTGATTTCGACGGGGCGCAAGAGAAACTTCAAGC
CTGCTACCACGTGCTTCGCAACGACTACTTCCTCTCGGGGTGGGCGGACG
CGTTCTTGGTGGAAGCGCGTCAGTTGATATTCGAGACTTACTGCCGCATT
CACCAGAAGATCGATATCAACATGTTGGGGCAAAAGCTGGGCATGTCCCC
tgcggaggcggaaaaatGGATCGTGGATCTGATCTTGGATTCCAAGTTGG
TGGCGAAAATTGACTCCCGCGACAATTACGTGGAGATGAACACTCGGTCG
CCCTCTGTGTATCATCAGGTACTGGACCGCACGGAGcgcctggcctcctc
caccttccgaTTGGGCACGGATACGCAGAAGATTTTCGGGCAGACCCTAG
GGGGCTACCCTGATAGGGGGGCAacaggggggagacgggggagGCCTTGA

Synonyms

Publications