EWM27525.1, cds3164 (CDS) Nannochloropsis gaditana

Overview
NameEWM27525.1
Unique Namecds3164
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:912538..913905 +
Alignment locationCM002460.1:914150..914274 +
Alignment locationCM002460.1:914330..914336 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27525.1
Producteukaryotic translation initiation factor 3 subunit e
Orig transcript idgnl|cribi|Naga_100101g1.9063.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:912538..913905 +
CM002460.1supercontigCM002460.1:914150..914274 +
CM002460.1supercontigCM002460.1:914330..914336 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005654nucleoplasm
GO:0005852eukaryotic translation initiation factor 3 complex
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003743translation initiation factor activity
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016650eIF3e
IPR011991WHTH_DNA-bd_dom
IPR019010eIF3e_N
IPR000717PCI_dom
Homology
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|585109791|gb|EWM27525.1| (eukaryotic translation initiation factor 3 subunit e [Nannochloropsis gaditana])

HSP 1 Score: 1034.63 bits (2674), Expect = 0.000e+0
Identity = 499/499 (100.00%), Postives = 499/499 (100.00%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEELQEDIPPELEAQQQANDEREEVLREAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDAYLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQTLGGYPDRGATGGRRGRP 499
            MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEELQEDIPPELEAQQQANDEREEVLREAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDAYLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQTLGGYPDRGATGGRRGRP
Sbjct:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEELQEDIPPELEAQQQANDEREEVLREAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDAYLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQTLGGYPDRGATGGRRGRP 499          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|168025153|ref|XP_001765099.1| (predicted protein [Physcomitrella patens] >gi|162683686|gb|EDQ70094.1| predicted protein [Physcomitrella patens])

HSP 1 Score: 261.151 bits (666), Expect = 2.033e-78
Identity = 172/491 (35.03%), Postives = 266/491 (54.18%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL--QEDIPPELEAQQQANDEREEVLREAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAA----LPAYYDYAKFKYERGEYDDAYLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFL------SGWA-----DAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTD 474
            MA+YDLT  +APF D H +     PL   +++ + YS D +++AK+ LLAKT  VD  +   + L   ED+P ++  ++     R +VL E+A   +    L++   ++E      +D    L+M ++        + A Y YAKF++E G Y  A  +L  Y          ++ R   ALWG+L   IL Q W +   A E +++           +  T+ S S   P+       +LQ RTW++HW LF +    D  +           I++L F             +RY  A+Q NA  LLRY+ T VI++KR        +++VIKE+I +I+QE YTY DP+T+FL+CLYV +DF+GAQ+KL+ C  V+ +D+FL      +G+      D F+  AR  IFETYCRIHQ IDI ML QKL M+  +A +WI +LI +++L AKIDS+   V M T+SP++Y Q++++T+ L   ++ L ++
Sbjct:    1 MAQYDLTAAVAPFLDRHLVF----PLLEFLQENQLYSDDQILKAKIELLAKTNMVDYAMDIHKSLYHTEDVPQDMVDRRAEVVGRLKVLEESAAPLISF--LQNPALVQEL----RSDQQYNLQMLQERYQIGSDQIEALYQYAKFQFECGNYSGASDYLYQY-----RTLCTNSERSISALWGKLACEILMQNWDV---ATEEVNR-----------LKETIDSKSFASPL------SQLQQRTWLMHWSLFIF-FNHDNGKN---------GIIDLFFS------------ERYLNAIQTNAHHLLRYLVTAVIVNKR--------RRNVIKELIKVIQQERYTYSDPVTEFLECLYVNYDFEGAQQKLRECEEVIVSDFFLGKQLSENGFVTIPLRDEFMENARLFIFETYCRIHQCIDIGMLSQKLNMNYDDAARWIANLIRNARLDAKIDSKMGTVVMGTQSPNIYEQIIEKTKVLGQRSYALTSN 426          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|1026758136|gb|OAE20257.1| (hypothetical protein AXG93_3960s1480 [Marchantia polymorpha subsp. ruderalis])

HSP 1 Score: 259.996 bits (663), Expect = 6.041e-78
Identity = 176/498 (35.34%), Postives = 271/498 (54.42%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL--QEDIPPELEAQQQANDEREEVLREAAGDALDMFS----LEDMTTIKEYVTAGATD----PAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA--YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFL------SGWA-----DAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDT 475
            MA+YDLT K+AP+ D H +     PL   +++ + Y+ D +++AK+ LLAKT  VD  +   + L   ED+P E+  ++     R + L E A   +        ++++ + K+Y      D     +E++E          A Y YAKF++E G Y  A  YL+    +    DR+ FS      ALWG+L A IL Q W +   A+E +++           +   + S +   P+       +LQ RTWV+HW LF +    +  R           I++L F             +RY  A+Q NA  LLRY+ T VI++KR        +++++K++I +I+QE YTY+DPIT+FL+CLYV +DF+GAQ+KL+ C  ++ ND+FL      +G+      D FL  AR  IFETYCRIHQ IDI ML QKL M+  +AE+WIV+LI +++L AKIDS+   V M T+  +VY Q++D+T++LA  ++ L  + 
Sbjct:    1 MAQYDLTAKVAPYLDRHLVF----PLLEFLQEKQLYADDQILKAKIELLAKTNMVDYAMDIHKSLYHTEDVPQEMVDRRVEVVGRLKSLEELAAPLISFLQNPQLVQELRSDKQYNLQMLHDRYKIGSEQIE----------ALYQYAKFQFECGNYSGASDYLYQYRTLCTNSDRS-FS------ALWGKLAAEILMQNWDI---AIEELNR-----------LKEIIDSKNFSSPL------NQLQQRTWVMHWALFIF-FNHENGRN---------GIIDLFFQ------------ERYLNAIQTNAHHLLRYLATAVIVNKR--------RRNMLKDLIKVIQQEHYTYKDPITEFLECLYVNYDFEGAQKKLRECEELILNDFFLGKEVQDNGFVTVPLRDEFLENARLFIFETYCRIHQCIDIGMLSQKLNMNYDDAERWIVNLIRNARLDAKIDSKMGTVVMGTQYANVYEQIIDKTKQLAVRSYMLANNV 427          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|344273343|ref|XP_003408482.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Loxodonta africana])

HSP 1 Score: 258.455 bits (659), Expect = 2.579e-77
Identity = 175/495 (35.35%), Postives = 264/495 (53.33%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL-QEDIPPELEAQQQANDEREEVLREAAGDALDMF----------SLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA--YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQT 482
            MAEYDLT +IA F D H +     PL   +   E Y+  ++++ KL LL+ T  VD  +   + L  +DIP  L  ++     + + L+  +G  + MF          S  D   + +Y+       A+K   +++ L  L   Y YAKF+YE G Y  A  YL+    +    DR A S+      LWG+L + IL Q W     A+E + +           +  T+ + S   P++S      LQ RTW++HW LF +   P + R         +NI++L                +Y  A+Q   P +LRY+TT VI +K       R+++ V+K+++ +I+QE+YTY+DPIT+F++CLYV FDFDGAQ+KL+ C  VL ND+FL    + F+  AR  IFET+CRIHQ I INML  KL M+P EAE+WIV+LI +++L AKIDS+  +V M   + S Y QV+++T+ L+  +  L  + +K   Q 
Sbjct:    1 MAEYDLTTRIAHFLDRHLVF----PLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTAVAQLKQLQAESGPIVKMFEDPELPRQMQSSRDGRMLFDYL-------ADKHGFRQEYLDTL---YRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSS------LWGKLASEILMQNW---DAAMEDLTR-----------LKETIDNNSVSSPLQS------LQQRTWLIHWSLFVFFNHP-KGR---------DNIIDLFL-----------YQPQYLNAIQTMCPHILRYLTTAVITNKD-----VRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQN 429          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|410904933|ref|XP_003965946.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Takifugu rubripes])

HSP 1 Score: 256.914 bits (655), Expect = 9.577e-77
Identity = 182/496 (36.69%), Postives = 268/496 (54.03%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL--QEDIP-------PELEAQ-QQANDEREEVLR--EAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA--YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQT 482
            MAEYDLT KIA F D H +     PL   +   E Y+ ++++  KL LL++T  VD  +     L  ++DIP        E+ AQ +Q   E E +++  E       M S  D   + +Y+       AEK   +++ L  L   Y YAKF+YE G Y  A  YL+    +    DR A S      +LWG+L + IL Q W   + A+E +       + RE     T+ + S   P++S      LQ RTW++HW LF +   P + R         +NI+EL                +Y  A+Q   P +LRY+TT VI +K       R+++ V+K+++ +I+QE+YTY+DPIT+F++CLYV FDFD AQ+KL+ C  VL ND+FL    + F+  AR  IFET+CRIHQ I I+ML  KL MSP EAE+WIV+LI +++L AKIDS+  +V M   + S Y QV+++T+ L+  +  L  + +K   Q+
Sbjct:    1 MAEYDLTTKIAHFLDRHLVF----PLLEFLSVKEIYNEEELLNGKLDLLSETNMVDFAMDVHRSLFPEKDIPYTLKEKRTEVVAQLKQLQSETEPIVKMFEDPETTRQMQSTRDGRMLFDYL-------AEKHNFRQEYLDTL---YRYAKFQYECGNYSGAAEYLYFFRVLVPPTDRNALS------SLWGKLASEILMQNW---EAAMEDL------TRLRE-----TIDNNSVTSPLQS------LQQRTWLIHWSLFVFFNHP-KGR---------DNIIELFL-----------YQPQYLNAIQTMCPHILRYLTTAVITNKD-----VRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDSAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISISMLADKLNMSPEEAERWIVNLICNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQVLAMNIEKKQAQS 430          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|594682517|ref|XP_007188837.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Balaenoptera acutorostrata scammoni])

HSP 1 Score: 256.914 bits (655), Expect = 1.010e-76
Identity = 176/495 (35.56%), Postives = 263/495 (53.13%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL-QEDIPPELEAQ--------QQANDEREEVLR--EAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA--YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQT 482
            MAEYDLT +IA F D H +     PL   +   E Y+  ++++ KL LL+ T  VD  +   + L  +DIP  L  +        +Q   E E +++  E       M S  D   + +Y+       A+K   +++ L  L   Y YAKF+YE G Y  A  YL+    +    DR A S+      LWG+L + IL Q W     A+E + +           +  T+ + S   P++S      LQ RTW++HW LF +   P + R         +NI++L                +Y  A+Q   P +LRY+TT VI +K       R+++ V+K+++ +I+QE+YTY+DPIT+F++CLYV FDFDGAQ+KL+ C  VL ND+FL    + F+  AR  IFET+CRIHQ I INML  KL M+P EAE+WIV+LI +++L AKIDS+  +V M   + S Y QV+++T+ L+  +  L  + +K   Q 
Sbjct:    1 MAEYDLTTRIAHFLDRHLVF----PLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYL-------ADKHGFRQEYLDTL---YRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSS------LWGKLASEILMQNW---DAAMEDLTR-----------LKETIDNNSVSSPLQS------LQQRTWLIHWSLFVFFNHP-KGR---------DNIIDLFL-----------SQPQYLNAIQTMCPHILRYLTTAVITNKD-----VRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQTLAMNIEKKLNQN 429          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|558109153|ref|XP_006085268.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Myotis lucifugus] >gi|521027714|gb|EPQ09502.1| Eukaryotic translation initiation factor 3 subunit E [Myotis brandtii])

HSP 1 Score: 256.914 bits (655), Expect = 1.043e-76
Identity = 177/495 (35.76%), Postives = 263/495 (53.13%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL-QEDIPPELEAQ--------QQANDEREEVLR--EAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA--YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQT 482
            MAEYDLT +IA F D H +     PL   +   E Y+  ++++ KL LL+ T  VD  +   + L  +DIP  L  +        +Q   E E +++  E       M S  D   + +Y+       A+K   +++ L  L   Y YAKF+YE G Y  A  YL+    +    DR A S+      LWG+L + IL Q W     A+E + +           +  T+ + S   P++S      LQ RTW++HW LF +   P + R         +NI++L                +Y  A+Q   P +LRY+TT VI +K       R+++ V+KE++ +I+QE+YTY+DPIT+F++CLYV FDFDGAQ+KL+ C  VL ND+FL    + F+  AR  IFET+CRIHQ I INML  KL M+P EAE+WIV+LI +++L AKIDS+  +V M   + S Y QV+++T+ L+  +  L  + +K   Q 
Sbjct:    1 MAEYDLTTRIAHFLDRHLVF----PLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYL-------ADKHGFRQEYLDTL---YRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSS------LWGKLASEILMQNW---DAAMEDLTR-----------LKETIDNNSVSSPLQS------LQQRTWLIHWSLFVFFNHP-KGR---------DNIIDLFL-----------YQPQYLNAIQTMCPHILRYLTTAVITNKD-----VRKRRQVLKELVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQN 429          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|591297597|ref|XP_007075896.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E isoform X1 [Panthera tigris altaica])

HSP 1 Score: 256.914 bits (655), Expect = 1.198e-76
Identity = 176/495 (35.56%), Postives = 263/495 (53.13%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL-QEDIPPELEAQ--------QQANDEREEVLR--EAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA--YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQT 482
            MAEYDLT +IA F D H +     PL   +   E Y+  ++++ KL LL+ T  VD  +   + L  +DIP  L  +        +Q   E E +++  E       M S  D   + +Y+       A+K   +++ L  L   Y YAKF+YE G Y  A  YL+    +    DR A S+      LWG+L + IL Q W     A+E + +           +  T+ + S   P++S      LQ RTW++HW LF +   P + R         +NI++L                +Y  A+Q   P +LRY+TT VI +K       R+++ V+K+++ +I+QE+YTY+DPIT+F++CLYV FDFDGAQ+KL+ C  VL ND+FL    + F+  AR  IFET+CRIHQ I INML  KL M+P EAE+WIV+LI +++L AKIDS+  +V M   + S Y QV+++T+ L+  +  L  + +K   Q 
Sbjct:    1 MAEYDLTTRIAHFLDRHLVF----PLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYL-------ADKHGFRQEYLDTL---YRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALSS------LWGKLASEILMQNW---DAAMEDLTR-----------LKETIDNNSVSSPLQS------LQQRTWLIHWSLFVFFNHP-KGR---------DNIIDLFL-----------SQPQYLNAIQTMCPHILRYLTTAVITNKD-----VRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQN 429          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|17389740|gb|AAH17887.1| (Eukaryotic translation initiation factor 3, subunit E [Homo sapiens])

HSP 1 Score: 256.529 bits (654), Expect = 1.632e-76
Identity = 175/495 (35.35%), Postives = 262/495 (52.93%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL-QEDIPPELEAQ--------QQANDEREEVLR--EAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA--YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQT 482
            MAEYDLT +IA F D H +     PL   +   E Y+  ++++ KL LL+ T  VD  +   + L  +DIP  L  +        +Q   E E +++  E       M S  D   + +Y+       A+K   +++ L  L   Y YAKF+YE G Y  A  YL+    +    DR A S      +LWG+L + IL Q W  V + +  + +              T+ + S   P++S      LQ RTW++HW LF +   P + R         +NI++L                +Y  A+Q   P +LRY+TT VI +K       R+++ V+K+++ +I+QE+YTY+DPIT+F++CLYV FDFDGAQ+KL+ C  VL ND+FL    + F+  AR  IFET+CRIHQ I INML  KL M+P EAE+WIV+LI +++L AKIDS+  +V M   + S Y QV+++T+ L+  +  L  + +K   Q 
Sbjct:    1 MAEYDLTTRIAHFLDRHLVF----PLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRDGRMLFDYL-------ADKHGFRQEYLDTL---YRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALS------SLWGKLASEILMQNWDAVMEDLTRLKE--------------TIDNNSVSSPLQS------LQQRTWLIHWSLFVFFNHP-KGR---------DNIIDLFL-----------YQPQYLNAIQTMCPHILRYLTTAVITNKD-----VRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQMLAMNIEKKLNQN 429          
BLAST of EWM27525.1 vs. NCBI_GenBank
Match: gi|826296590|ref|XP_012500770.1| (PREDICTED: eukaryotic translation initiation factor 3 subunit E [Propithecus coquereli])

HSP 1 Score: 256.144 bits (653), Expect = 2.157e-76
Identity = 174/495 (35.15%), Postives = 262/495 (52.93%), Query Frame = 0
Query:    1 MAEYDLTQKIAPFTDVHFLVQSDGPLDFLIEQAEYYSYDDVMRAKLALLAKTKNVDGQLRALEEL-QEDIPPELEAQ--------QQANDEREEVLR--EAAGDALDMFSLEDMTTIKEYVTAGATDPAEKLEMKEKLLAALPAYYDYAKFKYERGEYDDA--YLFLNNYIQAIGDRAAFSTVRYSHALWGRLGAVILTQQWHLVKDAVEAIDKHIMTVKRREDGVPPTMPSPSDPDPIRSMSDREKLQLRTWVLHWCLFAYPVTPDEARKRESAGDKWENILELIFPVNDEKQGPGNGPDRYRQAVQNNAPWLLRYVTTMVILHKRPMSERFRRKQDVIKEVIWLIEQEAYTYQDPITQFLQCLYVRFDFDGAQEKLQACYHVLRNDYFLSGWADAFLVEARQLIFETYCRIHQKIDINMLGQKLGMSPAEAEKWIVDLILDSKLVAKIDSRDNYVEMNTRSPSVYHQVLDRTERLASSTFRLGTDTQKIFGQT 482
            MAEYDLT +IA F D H +     PL   +   E Y+  ++++ KL LL+ T  VD  +   + L  +DIP  L  +        +Q   E E +++  E       M S   +T +  Y+    +      + +++ L  L   Y YAKF+YE G Y  A  YL+    +    DR A S      +LWG+L + IL Q W     A+E + +           +  T+ + S   P++S      LQ RTW++HW LF +   P + R         +NI++L                +Y  A+Q   P +LRY+TT VI +K       R+++ V+K+++ +I+QE+YTY+DPIT+F++CLYV FDFDGAQ+KL+ C  VL ND+FL    + F+  AR  IFET+CRIHQ I INML  KL M+P EAE+WIV+LI +++L AKIDS+  +V M   + S Y QV+++T+ L+  +  L  + +K   Q 
Sbjct:    1 MAEYDLTTRIAHFLDRHLVF----PLLEFLSVKEIYNEKELLQGKLDLLSDTNMVDFAMDVYKNLYSDDIPHALREKRTTVVAQLKQLQAETEPIVKMFEDPETTRQMQSTRKVTILHNYIANFFS-----FQFRQEYLDTL---YRYAKFQYECGNYSGAAEYLYFFRVLVPATDRNALS------SLWGKLASEILMQNW---DAAMEDLTR-----------LKETIDNNSVSSPLQS------LQQRTWLIHWSLFVFFNHP-KGR---------DNIIDLFL-----------YQPQYLNAIQTMCPHILRYLTTAVITNKD-----VRKRRQVLKDLVKVIQQESYTYKDPITEFVECLYVNFDFDGAQKKLRECESVLVNDFFLVACLEDFIENARLFIFETFCRIHQCISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKSLSFRSQILAMNIEKKLNQN 431          
The following BLAST results are available for this feature:
BLAST of EWM27525.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109791|gb|EWM27525.1|0.000e+0100.00eukaryotic translation initiation factor 3 subunit... [more]
gi|168025153|ref|XP_001765099.1|2.033e-7835.03predicted protein [Physcomitrella patens] >gi|1626... [more]
gi|1026758136|gb|OAE20257.1|6.041e-7835.34hypothetical protein AXG93_3960s1480 [Marchantia p... [more]
gi|344273343|ref|XP_003408482.1|2.579e-7735.35PREDICTED: eukaryotic translation initiation facto... [more]
gi|410904933|ref|XP_003965946.1|9.577e-7736.69PREDICTED: eukaryotic translation initiation facto... [more]
gi|594682517|ref|XP_007188837.1|1.010e-7635.56PREDICTED: eukaryotic translation initiation facto... [more]
gi|558109153|ref|XP_006085268.1|1.043e-7635.76PREDICTED: eukaryotic translation initiation facto... [more]
gi|591297597|ref|XP_007075896.1|1.198e-7635.56PREDICTED: eukaryotic translation initiation facto... [more]
gi|17389740|gb|AAH17887.1|1.632e-7635.35Eukaryotic translation initiation factor 3, subuni... [more]
gi|826296590|ref|XP_012500770.1|2.157e-7635.15PREDICTED: eukaryotic translation initiation facto... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3172rna3172Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications