rna3171, rna3171 (mRNA) Nannochloropsis gaditana

Overview
Namerna3171
Unique Namerna3171
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2190
Alignment locationCM002460.1:910583..912007 -

Link to JBrowse

Properties
Property NameValue
ProductZinc/iron permease
Orig transcript idgnl|cribi|Naga_100101g2.9059.mrna
Orig protein idgnl|cribi|Naga_100101g2.9059
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:910583..912007 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100101g2gene3048Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27521.1cds3163Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna3171rna3171-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna3171 ID=rna3171|Name=rna3171|organism=Nannochloropsis gaditana|type=mRNA|length=2190bp
ATGGGGGTACGCAGGACAAAAACTATTTTCTTCGTATGGCTTCTACACTT
AAGTCTTGCGGCCTTTGTGGTTCATGCTTTCGTTACCAATGTGGCAAAAC
CAGCCCTTCGACGTCTTTTGCCGCGCTGTGCCGCTGGTGTGAATGTGATA
TATTCCGAGCGCTTTCTTGAACATAAAGCGAGAGGTTACCATCCTGAAAA
CCCGTTACGCGTCTCAGTACCTGCTCAGCTTCTCAAGCATACACCTGGAG
TGCGGCTTTACCCTCCAGCTGTGAGCAAAGAGGAGGCATTGGCTGTCATC
CTAAAAGTACACGATGTCGAGTATGTGGAAGAAGTAAAAGCTCTATCAGA
ACGCGGGGGTGGTAGCATGGACGCTGATACGTATGTAAATAGCGCCACAT
ATGATGTGTGCCTGTTGGCGGCTGCCGCTTGGATGGACTGTGTCGAGAGG
ACTCTCTTGGGGGAGATGGAGGAAGTGCCAGGAGAAAACGGAGACAACTT
GACCCTTCGGGTCCACAATGGTATCCGTCGCCCTTCGTTTGCCCTGACCC
GCCCGCCTGGACACCACGCCCTCGCAGGGCAAGCTATGGGGTTTTGTATC
TTCAATTTTGCAGCGGTGGCTGCTTGCTACGCGCTGGATCGGCTGGGTTG
TAGGAAAGTCGCTATATTGGACCTGGATGCGCACCACGGGAACGGCCATC
AGGCTTTCGTCCGCACCCATCCATCCATTTGCTATGCATCCTTTCACCAA
AAGGATGCTTTCCCCATGACGGGTTTGGATCCCCGCGACTACGGTCCGCA
TGGGAACTTACTGGACGTGCCCATCCCCGCGTACAGCGGCCTGGGGACTT
ATCTTCCCCTCCTCGACGACAAGGTCCTGCCTTTCCTGACCGCCTTCGAG
CCCGACCTTCTCATCGTCTCCATTGGTTACGACTGTCTGGTGGACGACCC
GCTTGCCCAGTTGGCCCTGGGGCCTCAGGATTTCACCGCAGTCGGGGACC
GTCTTTTGAGGGCATTCGGGAGGGAGAAGATTGTATTCGGGCTGGAAGGG
GGCTATGACCCGGATAATGTTGTAGGACGATTTTCAGACAGTGCTTGTCT
GCATCCGGAACGCCCTACGAAGGCTTTTTTCAAAGCCGCTAATGGCAGGC
CTTTAAAAGTATTTTTTAACTGTAATGAATTTCGAAACAATCACAGAACT
TTACCATGGATCGCTCTCGTCTCTTGGAAGAAGACCTTGACCTACCTATT
TGCTGCACCTGTGGCAATGCCTATGGCTTTTCTCCTCCCCCGTTACCGAC
GTGCCGTATTTGTGAGGATGACAGGCCATGTCCCTTGGATTATACGACAC
AGGCAGTGGCTCCCATCAGATGGGCCGCATTGGACAAGCCTCCGTGCCTT
AAGTGCCAATGGCGGGCACTGCACTGTCGTTCGACCTGTTGAGGCTGCTG
TTTACAGCATCGAAACCCAGCCAAAGGTCGGGATCGGCCAACGTTGCTTG
CTATTACAGCAACCTGGGGAGGAGTCGGTACAAGTAAGCAGGGTAAGGGG
TGACAAAAGAGGCGATCGTGACGATCTTGGAAGGGGAGGGAATGTCCTTT
GGGACTGTTGCGCCTTCCTAGACAAGGCCACCGTCCAAGCAGTGACCGAG
TTGGGCGGCATCCAGAAAATTGTCCTCTCCCATCCGCACTTTTTGGGCTC
GTGTGTGACATGGAGCAAGGTCTTTGGAGACGCGCCTATTTACATGCATG
CCAGCGACAAGCATTGGGTGACGCGAAAGGATGAAAGCCGAAATCCACCG
AGCTCACGATACTCTTTTTGGGAAGGAGAGGAGCTGCAGTTGAGCCCATC
GTTGAAGGTCGTGCGCTTGGGCGGCCATTTTCCTTCCTCCTCTGTGCTGC
TCTGGGCATCGGCTCCGCAGGACGATAAAGCTGTCCTCTTCACGGGCGAT
ACCATCCTACCCGTACCGCATGGTCGGTGGTGCTCGTTCATGTACAGCTT
TCCCAACCTGCTGCCTCTGCCAGATTTTGTCGTGGAGAGTATTCTTAAGA
AAGTTACCGCCTTGCCGGCCTTCGATCGTCTCTACGGTCCCTTCTCGTCT
TCATCTATCCAAGGAAACGCGAAAGATGCAGTCCTGGAGAGTGCACAACG
TTATCTAGATTCATTGGCCGGAAAGTACCACGGCAAATGA
back to top

protein sequence of rna3171

>rna3171-protein ID=rna3171-protein|Name=rna3171|organism=Nannochloropsis gaditana|type=polypeptide|length=474bp
MAAGATSGRGGFVGLNLVLAALTLAVFLSTRRLKLAPSHVVFLNALSCGI
LVGAVLGIILPEGFEAQQAGGKGREASGIPILIGYAFQLLLDNVGTACRS
GHHHHSSVLSGHPKHSPLPATPRDTGEYGMEEDSERLDSLTVEASTGRAQ
EGGNGRFLSDSRRTSSALRSPWSSEDENMVEMTSVEGVPPGVPPTTRASQ
AHFPPPSTSAACRGGRQPGRSSNSPLYPRESQRDHYRPSQRTSKARGDGS
LPALRGPSGPTLLGSGDGGSPQPAFLGLLVHCLADGVALGASSLGTSSLQ
LTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQ
EQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERA
ESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELLHSHEHVRNTFVTRAVV
LLLLIMGMFAVPLLARLAPDHGFR
back to top

mRNA from alignment at CM002460.1:910583..912007-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna3171 ID=rna3171|Name=rna3171|organism=Nannochloropsis gaditana|type=mRNA|length=1425bp|location=Sequence derived from alignment at CM002460.1:910583..912007- (Nannochloropsis gaditana)
ATGGCAGCCGGGGCTACCAGTGGTCGCGGTGGTTTCGTGGGCCTGAACCT
GGTCTTGGCGGCGTTAACACTCGCAGTGTTTCTCAGCACCCGCCGCTTGA
AGCTTGCTCCTTCTCACGTTGTATTTTTAAACGCGCTCTCATGTGGAATA
TTGGTGGGTGCGGTGCTGGGCATAATATTACCGGAAGGGTTTGAAGCGCA
ACAGGCAGGTGGCAAAGGCAGAGAAGCAAGTGGCATTCCAATCCTTATTG
GGTACGCCTTCCAATTGCTGCTCGACAATGTGGGGACCGCCTGCCGGTCA
GGTCATCACCACCACTCGAGCGTCCTGTCGGGTCACCCGAAACACTCTCC
TTTGCCAGCAACACCAAGGGATACCGGCGAGTACGGGATGGAGGAGGACA
GCGAGCGCCTAGACAGCCTCACAGTGGAGGCTTCCACGGGCCGGGCTCAG
GAAGGCGGAAATGGACGCTTTCTGTCCGACTCGCGCCGCACCTCATCGGC
CTTGCGATCCCCTTGGTCGTCAGAAGATGAGAACATGGTGGAAATGACCT
CCGTGGAAGGGGTCCCGCCTGGCGTGCCGCCAACGACGAGGGCCTCGCAA
GCCCATTTCCCGCCGCCATCGACCAGCGCGGCTTGTCGGGGAGGAAGACA
ACCAGGCAGGAGCTCCAATAGCCCACTATACCCACGGGAAAGTCAAAGAG
ATCATTACAGACCGTCCCAGCGCACTTCCAAGGCCCGTGGTGATGGATCT
CTGCCTGCCCTCAGAGGACCCAGTGGTCCCACCCTGCTTGGGTCTGGCGA
CGGGGGCTCCCCCCAGCCCGCCTTTCTCGGCCTCCTCGTGCACTGCCTCG
CAGACGGGGTGGCTCTTGGTGCATCCTCCTTGGGGACGTCGTCTTTGCAG
CTCACTGTCTACCTTGCCTTGATGATTCACAAGCTCCCGGTTGCCTTTGC
GACAGGGACTCTCCTAGCCAAGTCTCTTTCCCCTAGAACCGGCCCCGGTA
CCCTGAGGTCTCCACATCAAGGCCTGGCGCAGACTCAGCTACTAGAGCAA
GAACAGGAGCAACAGCCATCAGAACAGGAACAGAGGGCCAAAAGTTTTTT
ATATCATGCGTTGGCCTTCTCTTTCGCATCGCCCTTGGCTGCTTTGTCAA
CGCATTTGATACTACGAGTTCAGCAAAGGCAACAAGCGAAAGAAAGAGCA
GAATCTCCCGATCATAACACCACGTTTGTGGGCTCGGGCCTTCTTTTCTC
TGCAGGCACCTTCTTGTACGTCTCTGTTGGTCATATCATGCCGGAGTTGT
TGCACTCCCATGAGCACGTGAGGAACACCTTTGTCACACGAGCGGTAGTC
CTGCTGCTGTTGATAATGGGAATGTTTGCTGTCCCCTTGCTTGCTCGTTT
GGCGCCAGATCATGGCTTTCGCTAG
back to top

Coding sequence (CDS) from alignment at CM002460.1:910583..912007-

>rna3171 ID=rna3171|Name=rna3171|organism=Nannochloropsis gaditana|type=CDS|length=1425bp|location=Sequence derived from alignment at CM002460.1:910583..912007- (Nannochloropsis gaditana)
ATGGCAGCCGGGGCTACCAGTGGTCGCGGTGGTTTCGTGGGCCTGAACCT
GGTCTTGGCGGCGTTAACACTCGCAGTGTTTCTCAGCACCCGCCGCTTGA
AGCTTGCTCCTTCTCACGTTGTATTTTTAAACGCGCTCTCATGTGGAATA
TTGGTGGGTGCGGTGCTGGGCATAATATTACCGGAAGGGTTTGAAGCGCA
ACAGGCAGGTGGCAAAGGCAGAGAAGCAAGTGGCATTCCAATCCTTATTG
GGTACGCCTTCCAATTGCTGCTCGACAATGTGGGGACCGCCTGCCGGTCA
GGTCATCACCACCACTCGAGCGTCCTGTCGGGTCACCCGAAACACTCTCC
TTTGCCAGCAACACCAAGGGATACCGGCGAGTACGGGATGGAGGAGGACA
GCGAGCGCCTAGACAGCCTCACAGTGGAGGCTTCCACGGGCCGGGCTCAG
GAAGGCGGAAATGGACGCTTTCTGTCCGACTCGCGCCGCACCTCATCGGC
CTTGCGATCCCCTTGGTCGTCAGAAGATGAGAACATGGTGGAAATGACCT
CCGTGGAAGGGGTCCCGCCTGGCGTGCCGCCAACGACGAGGGCCTCGCAA
GCCCATTTCCCGCCGCCATCGACCAGCGCGGCTTGTCGGGGAGGAAGACA
ACCAGGCAGGAGCTCCAATAGCCCACTATACCCACGGGAAAGTCAAAGAG
ATCATTACAGACCGTCCCAGCGCACTTCCAAGGCCCGTGGTGATGGATCT
CTGCCTGCCCTCAGAGGACCCAGTGGTCCCACCCTGCTTGGGTCTGGCGA
CGGGGGCTCCCCCCAGCCCGCCTTTCTCGGCCTCCTCGTGCACTGCCTCG
CAGACGGGGTGGCTCTTGGTGCATCCTCCTTGGGGACGTCGTCTTTGCAG
CTCACTGTCTACCTTGCCTTGATGATTCACAAGCTCCCGGTTGCCTTTGC
GACAGGGACTCTCCTAGCCAAGTCTCTTTCCCCTAGAACCGGCCCCGGTA
CCCTGAGGTCTCCACATCAAGGCCTGGCGCAGACTCAGCTACTAGAGCAA
GAACAGGAGCAACAGCCATCAGAACAGGAACAGAGGGCCAAAAGTTTTTT
ATATCATGCGTTGGCCTTCTCTTTCGCATCGCCCTTGGCTGCTTTGTCAA
CGCATTTGATACTACGAGTTCAGCAAAGGCAACAAGCGAAAGAAAGAGCA
GAATCTCCCGATCATAACACCACGTTTGTGGGCTCGGGCCTTCTTTTCTC
TGCAGGCACCTTCTTGTACGTCTCTGTTGGTCATATCATGCCGGAGTTGT
TGCACTCCCATGAGCACGTGAGGAACACCTTTGTCACACGAGCGGTAGTC
CTGCTGCTGTTGATAATGGGAATGTTTGCTGTCCCCTTGCTTGCTCGTTT
GGCGCCAGATCATGGCTTTCGCTAG
back to top
Synonyms
Publications