EWM27521.1, cds3163 (CDS) Nannochloropsis gaditana

Overview
NameEWM27521.1
Unique Namecds3163
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:910583..912007 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27521.1
ProductZinc/iron permease
Orig transcript idgnl|cribi|Naga_100101g2.9059.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:910583..912007 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0046873metal ion transmembrane transporter activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0006810transport
GO:0030001metal ion transport
GO:0055085transmembrane transport
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR003689ZIP
Homology
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|585109787|gb|EWM27521.1| (Zinc/iron permease [Nannochloropsis gaditana])

HSP 1 Score: 945.266 bits (2442), Expect = 0.000e+0
Identity = 474/474 (100.00%), Postives = 474/474 (100.00%), Query Frame = 0
Query:    1 MAAGATSGRGGFVGLNLVLAALTLAVFLSTRRLKLAPSHVVFLNALSCGILVGAVLGIILPEGFEAQQAGGKGREASGIPILIGYAFQLLLDNVGTACRSGHHHHSSVLSGHPKHSPLPATPRDTGEYGMEEDSERLDSLTVEASTGRAQEGGNGRFLSDSRRTSSALRSPWSSEDENMVEMTSVEGVPPGVPPTTRASQAHFPPPSTSAACRGGRQPGRSSNSPLYPRESQRDHYRPSQRTSKARGDGSLPALRGPSGPTLLGSGDGGSPQPAFLGLLVHCLADGVALGASSLGTSSLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELLHSHEHVRNTFVTRAVVLLLLIMGMFAVPLLARLAPDHGFR 474
            MAAGATSGRGGFVGLNLVLAALTLAVFLSTRRLKLAPSHVVFLNALSCGILVGAVLGIILPEGFEAQQAGGKGREASGIPILIGYAFQLLLDNVGTACRSGHHHHSSVLSGHPKHSPLPATPRDTGEYGMEEDSERLDSLTVEASTGRAQEGGNGRFLSDSRRTSSALRSPWSSEDENMVEMTSVEGVPPGVPPTTRASQAHFPPPSTSAACRGGRQPGRSSNSPLYPRESQRDHYRPSQRTSKARGDGSLPALRGPSGPTLLGSGDGGSPQPAFLGLLVHCLADGVALGASSLGTSSLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELLHSHEHVRNTFVTRAVVLLLLIMGMFAVPLLARLAPDHGFR
Sbjct:    1 MAAGATSGRGGFVGLNLVLAALTLAVFLSTRRLKLAPSHVVFLNALSCGILVGAVLGIILPEGFEAQQAGGKGREASGIPILIGYAFQLLLDNVGTACRSGHHHHSSVLSGHPKHSPLPATPRDTGEYGMEEDSERLDSLTVEASTGRAQEGGNGRFLSDSRRTSSALRSPWSSEDENMVEMTSVEGVPPGVPPTTRASQAHFPPPSTSAACRGGRQPGRSSNSPLYPRESQRDHYRPSQRTSKARGDGSLPALRGPSGPTLLGSGDGGSPQPAFLGLLVHCLADGVALGASSLGTSSLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELLHSHEHVRNTFVTRAVVLLLLIMGMFAVPLLARLAPDHGFR 474          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|66396565|gb|AAH96499.1| (LOC613053 protein, partial [Xenopus tropicalis])

HSP 1 Score: 84.7297 bits (208), Expect = 1.014e-14
Identity = 61/180 (33.89%), Postives = 90/180 (50.00%), Query Frame = 0
Query:  269 GSPQPAFLGLLVHCLADGVALGASSLGTS-SLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELL---HSHEHVRNTF 444
            G+   A LGL++H  ADGVALGA+   +  S+Q+ V+ A+++HK P AF   + L                H GL + Q+ +                   H LAFS A+PL  ++T+LIL +           +  H  T  G+G+LFSAGTFLYV+  H++PE+    H H HV + +
Sbjct:  113 GTSITATLGLVIHAAADGVALGAAVASSQVSVQVIVFFAVILHKAPAAFGLVSFLM---------------HAGLEKAQIRK-------------------HLLAFSLAAPLLTITTYLILSL--------TGGTSQHRLTATGNGMLFSAGTFLYVATVHVLPEISGRGHHHHHVTSEY 250          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|301620884|ref|XP_002939794.1| (PREDICTED: zinc transporter ZIP9-B [Xenopus tropicalis] >gi|1043420410|gb|OCA33040.1| hypothetical protein XENTR_v90013015mg [Xenopus tropicalis])

HSP 1 Score: 83.5741 bits (205), Expect = 3.108e-14
Identity = 61/180 (33.89%), Postives = 90/180 (50.00%), Query Frame = 0
Query:  269 GSPQPAFLGLLVHCLADGVALGASSLGTS-SLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELL---HSHEHVRNTF 444
            G+   A LGL++H  ADGVALGA+   +  S+Q+ V+ A+++HK P AF   + L                H GL + Q+ +                   H LAFS A+PL  ++T+LIL +           +  H  T  G+G+LFSAGTFLYV+  H++PE+    H H HV + +
Sbjct:  136 GTSITATLGLVIHAAADGVALGAAVASSQVSVQVIVFFAVILHKAPAAFGLVSFLM---------------HAGLEKAQIRK-------------------HLLAFSLAAPLLTITTYLILSL--------TGGTSQHRLTATGNGMLFSAGTFLYVATVHVLPEISGRGHHHHHVTSEY 273          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|147900464|ref|NP_001079555.1| (uncharacterized protein LOC379242 [Xenopus laevis] >gi|28277303|gb|AAH44279.1| MGC53199 protein [Xenopus laevis] >gi|1050377255|gb|OCT79452.1| hypothetical protein XELAEV_18026262mg [Xenopus laevis])

HSP 1 Score: 83.5741 bits (205), Expect = 3.545e-14
Identity = 61/180 (33.89%), Postives = 89/180 (49.44%), Query Frame = 0
Query:  269 GSPQPAFLGLLVHCLADGVALGASSLGTS-SLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELL---HSHEHVRNTF 444
            G+   A LGL++H  ADGVALGA+   +  S+Q+ V+ A+++HK P AF   T L                H GL + Q+ +                   H LAFS A+PL  ++T+LIL +           +  H     G+G+LFSAGTFLYV+  H++PE+    H H HV + +
Sbjct:  136 GTSITATLGLVIHAAADGVALGAAVASSQVSVQVIVFFAVILHKAPAAFGLVTFLM---------------HAGLEKAQIRK-------------------HLLAFSLAAPLLTITTYLILSL--------TGGTSQHRLAATGNGMLFSAGTFLYVATVHVLPEISGRGHQHHHVTSEY 273          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|1160098003|ref|XP_020377435.1| (zinc transporter ZIP9-like isoform X1 [Rhincodon typus])

HSP 1 Score: 83.9593 bits (206), Expect = 4.450e-14
Identity = 73/226 (32.30%), Postives = 107/226 (47.35%), Query Frame = 0
Query:  216 RQPGRSSNSPLYPRESQRDHYRPSQRTSKARGDGSLPALRGPSGPTLLGSGDGGSPQPAFLGLLVHCLADGVALGASSLGTS--SLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELLHSHEH 439
            RQ G + N+   P + Q+  Y PS   +      +  +    SGP +      GS   A LGL++H  ADGVALG ++ G+S  SLQ+ V+ A+++HK P +F   + L                H GL      E+ Q Q+             H   FS A+PL A++T+ I+         + +  P H T   G GLLFSAGTFLYV+  H++PE+    +H
Sbjct:  126 RQGGEAPNAGQQPSDGQQ--YSPSLHPASYTQPVASTSTETSSGPAV------GSSLTATLGLVIHAAADGVALGTAA-GSSQISLQVIVFFAVILHKAPASFGLVSYLM---------------HAGL------EKRQIQK-------------HLFIFSLAAPLLAVTTYFIV--------SKSSVGPLHQTKASGIGLLFSAGTFLYVASVHVLPEVSSQTQH 300          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|1069360356|ref|XP_018120450.1| (PREDICTED: zinc transporter ZIP9-like [Xenopus laevis] >gi|1050375364|gb|OCT77562.1| hypothetical protein XELAEV_18028654mg [Xenopus laevis])

HSP 1 Score: 82.4185 bits (202), Expect = 8.732e-14
Identity = 59/180 (32.78%), Postives = 90/180 (50.00%), Query Frame = 0
Query:  269 GSPQPAFLGLLVHCLADGVALGASSLGTS-SLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELL---HSHEHVRNTF 444
            G+   A LGL++H  ADGVALGA+   +  S+Q+ V+ A+++HK P AF   + L                H GL + Q+ +                   H LAFS A+PL  ++T+L+L + +         +  H     G+G+LFSAGTFLYV+  H++PE+    H H HV + +
Sbjct:  136 GTSITATLGLVIHAAADGVALGAAVASSQVSVQVIVFFAVILHKAPAAFGLVSFLM---------------HAGLEKAQIRK-------------------HLLAFSLAAPLLTITTYLVLSLTEG--------TSQHRLAATGNGMLFSAGTFLYVATVHVLPEINGRGHQHHHVASEY 273          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|1072253968|ref|XP_018412004.1| (PREDICTED: zinc transporter ZIP9-B-like [Nanorana parkeri])

HSP 1 Score: 82.0333 bits (201), Expect = 1.255e-13
Identity = 60/166 (36.14%), Postives = 86/166 (51.81%), Query Frame = 0
Query:  269 GSPQPAFLGLLVHCLADGVALGASSLGTS-SLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPEL 433
            G+   A LGL++H  ADGVALGA+   +  S+Q+ V+ A+++HK P AF   + L                H GL      E++Q Q+             H LAFS A+PL A++T+LIL +           S  H  +  G G+LFSAGTFLYV+  H++PE+
Sbjct:  138 GTSITATLGLVIHAAADGVALGAAVASSQVSVQVIVFFAVILHKAPAAFGLVSFLM---------------HAGL------EKKQIQK-------------HLLAFSVAAPLLAITTYLILTM--------TGGSSQHKLSATGHGMLFSAGTFLYVATVHVLPEI 261          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|632960911|ref|XP_007896464.1| (PREDICTED: zinc transporter ZIP9-B-like [Callorhinchus milii])

HSP 1 Score: 80.1073 bits (196), Expect = 5.446e-13
Identity = 63/168 (37.50%), Postives = 85/168 (50.60%), Query Frame = 0
Query:  269 GSPQPAFLGLLVHCLADGVALGASSLGTSSL---QLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPEL 433
            GS   A +GL++H  ADGVALG ++   SSL   Q+ V+LA+++HK P AFA  + L                H GL               E+ Q  K    H L FS A+PL A++T  I+       +  RA S  H T   G G+LFSAGTFLYV+  H++PE+
Sbjct:  134 GSSVTATIGLVIHAAADGVALGTAA--ASSLLPVQVIVFLAVILHKAPAAFALVSFLL---------------HAGL---------------ERRQIHK----HLLVFSLAAPLLAITTFFIV-------STSRANSTLHRTEATGMGMLFSAGTFLYVASVHVLPEV 258          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|768449505|ref|XP_011566839.1| (PREDICTED: zinc transporter ZIP9 [Plutella xylostella])

HSP 1 Score: 79.337 bits (194), Expect = 9.283e-13
Identity = 59/167 (35.33%), Postives = 84/167 (50.30%), Query Frame = 0
Query:  274 AFLGLLVHCLADGVALGASSLGT-SSLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPELLHSHEH 439
            A +GL+VH  ADGVALGA++  + + ++L V+LA+M+HK P AF   T L                H GL ++++             +R      H L FS A+P+  L T   +  + +Q         D N T  G  +LFSAGTFLYV+  H++PEL H H H
Sbjct:  137 ATIGLVVHAAADGVALGAAATTSHADVELVVFLAIMLHKAPAAFGLVTFLM---------------HAGLERSRI-------------RR------HLLIFSCAAPVMTLLTFFCIGAESKQTMS------DVNAT--GIAMLFSAGTFLYVATVHVLPELTHPHSH 261          
BLAST of EWM27521.1 vs. NCBI_GenBank
Match: gi|683473598|gb|KFZ67807.1| (Zinc transporter ZIP9, partial [Podiceps cristatus])

HSP 1 Score: 76.2554 bits (186), Expect = 1.174e-12
Identity = 59/176 (33.52%), Postives = 86/176 (48.86%), Query Frame = 0
Query:  267 DGGSPQPAFLGLLVHCLADGVALGAS-SLGTSSLQLTVYLALMIHKLPVAFATGTLLAKSLSPRTGPGTLRSPHQGLAQTQLLEQEQEQQPSEQEQRAKSFLYHALAFSFASPLAALSTHLILRVQQRQQAKERAESPDHNTTFVGSGLLFSAGTFLYVSVGHIMPE---LLHSHE 438
             G S     LGL+VH  ADGVALGA+ S   +S+QL V++A+M+HK P AF   + L                H GL + ++ +                   H L F+ A+P+ ++ T+L L    ++   E       N T  G  +LFSAGTFLYV+  H++PE   + HSH+
Sbjct:    7 SGNSKITTTLGLVVHAAADGVALGAAASTSQTSVQLIVFVAIMLHKAPAAFGLVSFLM---------------HAGLERNRIRK-------------------HLLVFALAAPVMSMVTYLGLSKSSKEALSEV------NAT--GVAMLFSAGTFLYVATVHVLPEVGGIAHSHK 140          
The following BLAST results are available for this feature:
BLAST of EWM27521.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109787|gb|EWM27521.1|0.000e+0100.00Zinc/iron permease [Nannochloropsis gaditana][more]
gi|66396565|gb|AAH96499.1|1.014e-1433.89LOC613053 protein, partial [Xenopus tropicalis][more]
gi|301620884|ref|XP_002939794.1|3.108e-1433.89PREDICTED: zinc transporter ZIP9-B [Xenopus tropic... [more]
gi|147900464|ref|NP_001079555.1|3.545e-1433.89uncharacterized protein LOC379242 [Xenopus laevis]... [more]
gi|1160098003|ref|XP_020377435.1|4.450e-1432.30zinc transporter ZIP9-like isoform X1 [Rhincodon t... [more]
gi|1069360356|ref|XP_018120450.1|8.732e-1432.78PREDICTED: zinc transporter ZIP9-like [Xenopus lae... [more]
gi|1072253968|ref|XP_018412004.1|1.255e-1336.14PREDICTED: zinc transporter ZIP9-B-like [Nanorana ... [more]
gi|632960911|ref|XP_007896464.1|5.446e-1337.50PREDICTED: zinc transporter ZIP9-B-like [Callorhin... [more]
gi|768449505|ref|XP_011566839.1|9.283e-1335.33PREDICTED: zinc transporter ZIP9 [Plutella xyloste... [more]
gi|683473598|gb|KFZ67807.1|1.174e-1233.52Zinc transporter ZIP9, partial [Podiceps cristatus... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3171rna3171Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications