rna3162, rna3162 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3162
Unique Name	rna3162
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2121
Alignment location	CM002460.1:883645..885689 -

Link to JBrowse

Properties


Property Name	Value
Product	cupin 4 family protein
Orig transcript id	gnl\|cribi\|Naga_100101g11.9056.mrna
Orig protein id	gnl\|cribi\|Naga_100101g11.9056
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:883645..885689 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100101g11	gene3039	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27518.1	cds3154	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3162	rna3162-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:883645..885689-
coding sequence from alignment at CM002460.1:883645..885689-

mRNA sequence

>rna3162 ID=rna3162|Name=rna3162|organism=Nannochloropsis gaditana|type=mRNA|length=2121bp
ATGATGAAGACACTCGTCTCATGTGCAGTGTTGCTATTGCAGCCGTTCGC
CTACTCCTTTTTTCCTGCAGCCAGGCAACATTATCCGCCCCATCGAGATC
TGCATCGGCGAGAACCATGCCTATCGTTTAGCGCCTTTATTGACGACAGT
TTGAAAGCTTCAGAACATCCATCCGACGAACTTCCCCCCAAGTCTTATTT
CTTTGATGCCCCTAAAGCTGTCCGGTTGGCAGCTTTTTCGTTTGCAGCTT
ACGGTAAGCCTTCCGGGTCCCGCTGGCTGCGCCTGTCTGATGGCACAGAT
TTGGGTTTTCAGTCCGACGACCTTGTGCGAAACAATTTTAAAAGTCTATT
ACTGGTTCATATTCTCCAAGCCCGTAACTTGCCGGAAGAACAAGGTGGAT
TGCTGGAAAAAGCCTTGTCTGGGTCTGGCTGTGACCCTTACGTTGTCTCA
GCAGTAAATAATTCTTGGGGTGCTGACCTGGCGATTACAAGTGCCAAAAC
TGCAAATTCGAATCCCGACTTTTTTCAACGCTTCTTTTTGTACGTGGAAG
ATCCGACAACGGCATCACTGAATCTTACAGTCAAAGATCGAAATCTACTG
AAGGGTGATGATGTTATCGGCTCTTGTCAAGTGCCTTTGAGGCTTCTGGA
AGAGAAGATAGGCGACGACGTACCCCCTGCACAGGGCATTTTGGAATGGT
CAGGAATCTTGGATATTGAGAGTGCTGTGCCAAATACAAAAAGTTCGGGG
ACCATTGAAATCGAGCTTCAGCTGGTACCTTTGGATGGCAATGCCGTAGA
CAAAGACGATAGAAATCTAGACGATCCGGATATAGAAAACATGAAATCAA
TCACTTTAACCCCTACAGGACCCAAAAGTGTTTTGGAAGGTATCGATTGG
AATGAGTTGGGGTCACGTGTTGGAGGAGTAGCAACAGGGTTGGGCCGCTA
CCAATTTGCGTGCTTTTTGACAAACGAGGAGACAGACACTCAGGGGGGAA
TATGGTACGACTGGAAGGCCAAGGAGATCATTATATCCTTTCGCGGGACT
CAGATGGAGTGGAAAGATCTTTTGACAGACATGGCGATTTATCAAGAAGG
TTTGGACGGGCCAGATGATCGCCGTCTAGTGCATGCTGGCTTTCGGCGTG
CATTTCGTTCCATCCGGGGGGGGGTAGTACAAGCCTTACAATTCATTGCT
CCTGATTTAATCGTTGACGGGTGGACTGTGGATGTATGCGGTCACTCTTT
GGGAGGCGCATTAGCCTGCTTGATGGCCTATGAGCTGGATCGACGAATGC
CGGCTCTATCAGAGGGAGGTCGTCTGCATGTCTATTCCTTCGGGGCCCCG
CGCGTAGGCAACACTGCCTTCTGCGACGAGTACGATGTTCGCCTGAAAGA
AGTGACGTTCCGAATTGTGAATGGTTTAGACATTGTCGCACGTATGCCGC
GAGGAACGGGACGGTCTGCGGTTTTAATGGAATACAATCATTGCGGACGC
ACGGTGTTGCTTACAGAGACAGAAGAAGGGCAATTTCGTGTCTGGGTGGA
GGGAGAGTCGGAAGGAGTGTGTCCACTTAAAGAGGGTGACGCATTTGCGT
CGACCACGGACAAGTCTGTCTCTGATTTGAGGGCAATAGCCATGAAGGGG
AAAGGAGACAAGGAGCTCGAATTTCAATTGCCTATAAGCAAGGCCACGTT
TTCGAATGGCACGACAGCCTCGGTCCAGGAGATGCTGCGGGCAGCTGGTA
ATCTCACTAATCTTGAGGCCATGCTTTCCTTTAAGCCATCTACGGATATT
TTGGCCTCCTTTTCTGGATCTCCCTCATCCTGGCCTCCCTCGGGACCTTT
CGGTCAGTTGAGTCTTCAAACGGACCTATTTCAAGTCGCCAACGCCGTCT
TCGGGACAGCTTTAAATTCAACCGCATTCATTGGCAAGAGTCTAGGACTT
AATGAGACGTTTATAGACAGTGAGCTGAATTTGATTAAAGGGCTAGTATA
CGGTGAGGCACTCGCCCATCACATGGAACCATTGTATTACCTTGCGCTCG
AAAAAGCTTTCGGGGCCGCGATGAAAATGGACTCTGCCAGGAAAGAGCAT
TGGGACGAAGACCAAAGGTAA

protein sequence of rna3162

>rna3162-protein ID=rna3162-protein|Name=rna3162|organism=Nannochloropsis gaditana|type=polypeptide|length=563bp
MVQFQLLFVWLALSFGAGEHQPRPPSTTTDNTVLSSMLGPTPGKELFFRD
FWQIKPAVIRRHNPTFFQPIMRQSDLDAILVQSSTASMLRGLSSSEPKCD
QAEHDAESKSWTLVKRIKGVDGEWWSSTPATAALRQIFGLDDDSTDAEVA
HAAFSRGYSLVINNIEDKLYGTSRLALAFEGELGYRTSINCYFTPPGSQA
FEAHFDWMDAFILQVEGSKRWRLYDALVEQPRPDMQFKPSLHDIGEPYID
FVLEPGDLLYLPSGTIHEALNENDGGLGNSSLHLTVGIETTVLGSWESLL
LEVLTVLSGGSAEDRDLHSTWSNVSALQCSRGPAGENAIDDSPNLPFENV
SQVFSSVVTPKIEDCNGATLRQGDLIALVLMQVAMQERALRRPVPLKNLM
KRNGKYKRLTHLTDVVSLLKEQGDVRGAWDAFIRERKSVPRNLEVFGKSD
SKDRPAHGEEMKNRLLGAAAAWSDIEIPDEIQDDFLKALDCLQGALSDSV
QTKAIFSHFEHVCQRDLVQRQEQRELLLEAGVWQADINAVDGKLQASQIY
GVGSQTPTDFSRQ

mRNA from alignment at CM002460.1:883645..885689-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3162 ID=rna3162|Name=rna3162|organism=Nannochloropsis gaditana|type=mRNA|length=2045bp|location=Sequence derived from alignment at CM002460.1:883645..885689- (Nannochloropsis gaditana)
TATCGAAGCTTGAATGTATGTCTCGACGTACTACGAATAAAAATTCATAT
TCTCTGCAATCCAAGAGTGTCTGATTGGTGTTGTCTTTTGTGTGTTTTCT
TTTCAACATTTGAACTCAACGTCCAACATTTCCATAGTACTGGACTTAGA
CGTCATGTATCTCTATTAATCCTCATAATGCTATCGTCGGTCACAGGCTG
TTCGATTTTGCGATCAGCAACCAAATAATGGTGCAGTTCCAACTCTTATT
TGTTTGGCTAGCCTTATCCTTTGGAGCTGGGGAGCACCAACCTAGGCCAC
CATCGACTACGACTGACAACACTGTGCTATCATCCATGCTGGGACCTACC
CCTGGCAAAGAATTGTTTTTCCGAGACTTCTGGCAAATTAAACCGGCCGT
TATTCGGAGGCATAATCCAACATTTTTCCAACCAATCATGCGGCAGAGTG
ACTTGGATGCTATACTGGTGCAAAGCTCAACCGCTTCAATGTTGAGAGGT
TTGAGTTCTAGCGAACCAAAATGCGATCAGGCAGAACATGACGCAGAAAG
TAAAAGCTGGACACTAGTCAAACGCATAAAGGGCGTCGATGGCGAATGGT
GGTCGAGCACTCCTGCTACCGCAGCGCTACGGCAGATTTTTGGTCTCGAC
GATGATTCGACGGATGCAGAGGTCGCGCATGCCGCCTTTTCACGAGGTTA
TTCTCTGGTCATAAACAATATTGAGGATAAGTTGTACGGCACATCCCGCT
TGGCTCTTGCTTTTGAAGGGGAACTGGGCTACCGCACGTCCATCAACTGC
TACTTTACCCCTCCTGGCAGCCAGGCTTTTGAGGCACATTTTGATTGGAT
GGATGCATTCATCCTTCAAGTAGAGGGCTCCAAGCGATGGCGTCTATACG
ATGCACTGGTGGAGCAACCGCGTCCGGACATGCAATTCAAGCCGAGCCTA
CACGACATCGGAGAGCCATACATTGACTTCGTCCTCGAGCCTGGGGATTT
GCTCTACCTGCCCTCTGGAACGATCCATGAGGCGCTCAATGAGAATGACG
GGGGCCTGGGAAATTCGTCGCTTCATTTGACAGTAGGGATTGAAACTACG
GTGTTGGGCTCATGGGAATCTTTGCTCTTGGAAGTGTTGACAGTGTTGAG
TGGGGGAAGTGCGGAAGACAGAGACCTTCATTCCACATGGTCAAATGTGT
CGGCTCTGCAGTGTTCCAGGGGACCAGCTGGCGAAAATGCAATCGACGAT
TCTCCAAACCTACCTTTTGAAAACGTCTCGCAGGTCTTCTCATCTGTTGT
CACACCCAAGATCGAGGACTGTAACGGAGCAACCTTAAGGCAAGGAGATT
TAATAGCCCTTGTTTTGATGCAAGTTGCTATGCAAGAAAGAGCTTTACGC
CGGCCCGTCCCGCTGAAAAACTTGATGAAAAGAAATGGTAAGTATAAACG
ATTGACGCACCTGACAGATGTCGTTTCTCTACTGAAAGAGCAAGGAGACG
TCCGAGGCGCTTGGGATGCCTTCATTCGCGAAAGGAAAAGCGTGCCTCGC
AATTTAGAGGTCTTCGGGAAGAGCGATTCTAAGGATAGACCAGCGCATGG
GGAAGAAATGAAGAACCGTCTTTTGGGAGCAGCTGCAGCATGGTCTGATA
TTGAAATACCAGACGAAATCCAGGATGATTTCCTTAAAGCGCTAGATTGT
CTGCAGGGAGCACTTTCAGACTCGGTGCAAACAAAAGCTATCTTTTCCCA
TTTCGAACACGTGTGTCAGCGGGATCTGGTTCAGCGCCAGGAACAACGAG
AACTTTTGTTGGAAGCAGGAGTTTGGCAGGCCGATATAAACGCAGTAGAT
GGAAAATTGCAAGCTTCTCAAATCTATGGAGTAGGATCACAAACTCCCAC
GGACTTTTCAAGACAATAGCAAGTTACGAACAGAATCAAATATCATAAAC
TGTGACATTTTATGTAGACGCATGAAAAAATCAACTGCAATTGCGTCTCT
ACTGGATTTATATTAAATTAAAGTAAATATTTGCACACAGCTCCA

Coding sequence (CDS) from alignment at CM002460.1:883645..885689-

>rna3162 ID=rna3162|Name=rna3162|organism=Nannochloropsis gaditana|type=CDS|length=1692bp|location=Sequence derived from alignment at CM002460.1:883645..885689- (Nannochloropsis gaditana)
ATGGTGCAGTTCCAACTCTTATTTGTTTGGCTAGCCTTATCCTTTGGAGC
TGGGGAGCACCAACCTAGGCCACCATCGACTACGACTGACAACACTGTGC
TATCATCCATGCTGGGACCTACCCCTGGCAAAGAATTGTTTTTCCGAGAC
TTCTGGCAAATTAAACCGGCCGTTATTCGGAGGCATAATCCAACATTTTT
CCAACCAATCATGCGGCAGAGTGACTTGGATGCTATACTGGTGCAAAGCT
CAACCGCTTCAATGTTGAGAGGTTTGAGTTCTAGCGAACCAAAATGCGAT
CAGGCAGAACATGACGCAGAAAGTAAAAGCTGGACACTAGTCAAACGCAT
AAAGGGCGTCGATGGCGAATGGTGGTCGAGCACTCCTGCTACCGCAGCGC
TACGGCAGATTTTTGGTCTCGACGATGATTCGACGGATGCAGAGGTCGCG
CATGCCGCCTTTTCACGAGGTTATTCTCTGGTCATAAACAATATTGAGGA
TAAGTTGTACGGCACATCCCGCTTGGCTCTTGCTTTTGAAGGGGAACTGG
GCTACCGCACGTCCATCAACTGCTACTTTACCCCTCCTGGCAGCCAGGCT
TTTGAGGCACATTTTGATTGGATGGATGCATTCATCCTTCAAGTAGAGGG
CTCCAAGCGATGGCGTCTATACGATGCACTGGTGGAGCAACCGCGTCCGG
ACATGCAATTCAAGCCGAGCCTACACGACATCGGAGAGCCATACATTGAC
TTCGTCCTCGAGCCTGGGGATTTGCTCTACCTGCCCTCTGGAACGATCCA
TGAGGCGCTCAATGAGAATGACGGGGGCCTGGGAAATTCGTCGCTTCATT
TGACAGTAGGGATTGAAACTACGGTGTTGGGCTCATGGGAATCTTTGCTC
TTGGAAGTGTTGACAGTGTTGAGTGGGGGAAGTGCGGAAGACAGAGACCT
TCATTCCACATGGTCAAATGTGTCGGCTCTGCAGTGTTCCAGGGGACCAG
CTGGCGAAAATGCAATCGACGATTCTCCAAACCTACCTTTTGAAAACGTC
TCGCAGGTCTTCTCATCTGTTGTCACACCCAAGATCGAGGACTGTAACGG
AGCAACCTTAAGGCAAGGAGATTTAATAGCCCTTGTTTTGATGCAAGTTG
CTATGCAAGAAAGAGCTTTACGCCGGCCCGTCCCGCTGAAAAACTTGATG
AAAAGAAATGGTAAGTATAAACGATTGACGCACCTGACAGATGTCGTTTC
TCTACTGAAAGAGCAAGGAGACGTCCGAGGCGCTTGGGATGCCTTCATTC
GCGAAAGGAAAAGCGTGCCTCGCAATTTAGAGGTCTTCGGGAAGAGCGAT
TCTAAGGATAGACCAGCGCATGGGGAAGAAATGAAGAACCGTCTTTTGGG
AGCAGCTGCAGCATGGTCTGATATTGAAATACCAGACGAAATCCAGGATG
ATTTCCTTAAAGCGCTAGATTGTCTGCAGGGAGCACTTTCAGACTCGGTG
CAAACAAAAGCTATCTTTTCCCATTTCGAACACGTGTGTCAGCGGGATCT
GGTTCAGCGCCAGGAACAACGAGAACTTTTGTTGGAAGCAGGAGTTTGGC
AGGCCGATATAAACGCAGTAGATGGAAAATTGCAAGCTTCTCAAATCTAT
GGAGTAGGATCACAAACTCCCACGGACTTTTCAAGACAATAG

Synonyms

Publications