EWM27516.1, cds3152 (CDS) Nannochloropsis gaditana

Overview
NameEWM27516.1
Unique Namecds3152
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:878553..880874 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27516.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100101g13.9054.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:878553..880874 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27516.1 vs. NCBI_GenBank
Match: gi|585109782|gb|EWM27516.1| (hypothetical protein Naga_100101g13 [Nannochloropsis gaditana])

HSP 1 Score: 1597.41 bits (4135), Expect = 0.000e+0
Identity = 773/773 (100.00%), Postives = 773/773 (100.00%), Query Frame = 0
Query:    1 MALNSILVSTLGAVSVILVLSAFVTGGTFYNYIARHEQGIPEMFDSKASEVSPSYSTLSRLPSLRGRYAVDKMAGSGSAPRRQPAKTENTSQVRRFLAFIPLLGLKNDDWGSRESERLVLEAWNALANHVRLMNESVELRVVGMVEDASYCDPRLFGPSASLASSAVSCLTLGPSCNQSGQKSAPTLDCIFEVATRVGDAYGANVYILANGDVVFTPTFTEAIAFALNTFGNGPPVREGEEGVAPSPRLTLQPPASASGASGFPPPCAEASQHEGFVLVGRRLDMNVSIPKVPDDPPLTAEDLLAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHFLLSKGASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAASTAGSAHKLGRSDFTTYVLKDGGMPEEEDEVAPHHLALRLERRSHPLIHGQLAGLRVAARGFAFPNASHEERNAHVQADENSGKTIFLLPVPAGEVASAMEWACWAGDMGLTNYLFVAASRNDSCAIEAALAVINKGRKGGEVLHMDPSQLTIAGWGGSKPYFNQKKSGIASRAVLDYGTGALMQRLLRLGLSVVLVPTLTPFPPPSRSASSASPHPHLPSFWGKNADAKMKGDEGTGRTSQEVIQSVMQASDDAACDVILWEETHTSAPGHTDTLSKHTYTKESSSKEKADKRANFLYARVEASSQIMKNWDTVFNCLTEDVRSSKSKRGWCFAELKTSCHHVVPAVSVSNYFENLSADQRLWSASSLQCRQKYKNRGT 773
            MALNSILVSTLGAVSVILVLSAFVTGGTFYNYIARHEQGIPEMFDSKASEVSPSYSTLSRLPSLRGRYAVDKMAGSGSAPRRQPAKTENTSQVRRFLAFIPLLGLKNDDWGSRESERLVLEAWNALANHVRLMNESVELRVVGMVEDASYCDPRLFGPSASLASSAVSCLTLGPSCNQSGQKSAPTLDCIFEVATRVGDAYGANVYILANGDVVFTPTFTEAIAFALNTFGNGPPVREGEEGVAPSPRLTLQPPASASGASGFPPPCAEASQHEGFVLVGRRLDMNVSIPKVPDDPPLTAEDLLAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHFLLSKGASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAASTAGSAHKLGRSDFTTYVLKDGGMPEEEDEVAPHHLALRLERRSHPLIHGQLAGLRVAARGFAFPNASHEERNAHVQADENSGKTIFLLPVPAGEVASAMEWACWAGDMGLTNYLFVAASRNDSCAIEAALAVINKGRKGGEVLHMDPSQLTIAGWGGSKPYFNQKKSGIASRAVLDYGTGALMQRLLRLGLSVVLVPTLTPFPPPSRSASSASPHPHLPSFWGKNADAKMKGDEGTGRTSQEVIQSVMQASDDAACDVILWEETHTSAPGHTDTLSKHTYTKESSSKEKADKRANFLYARVEASSQIMKNWDTVFNCLTEDVRSSKSKRGWCFAELKTSCHHVVPAVSVSNYFENLSADQRLWSASSLQCRQKYKNRGT
Sbjct:    1 MALNSILVSTLGAVSVILVLSAFVTGGTFYNYIARHEQGIPEMFDSKASEVSPSYSTLSRLPSLRGRYAVDKMAGSGSAPRRQPAKTENTSQVRRFLAFIPLLGLKNDDWGSRESERLVLEAWNALANHVRLMNESVELRVVGMVEDASYCDPRLFGPSASLASSAVSCLTLGPSCNQSGQKSAPTLDCIFEVATRVGDAYGANVYILANGDVVFTPTFTEAIAFALNTFGNGPPVREGEEGVAPSPRLTLQPPASASGASGFPPPCAEASQHEGFVLVGRRLDMNVSIPKVPDDPPLTAEDLLAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHFLLSKGASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAASTAGSAHKLGRSDFTTYVLKDGGMPEEEDEVAPHHLALRLERRSHPLIHGQLAGLRVAARGFAFPNASHEERNAHVQADENSGKTIFLLPVPAGEVASAMEWACWAGDMGLTNYLFVAASRNDSCAIEAALAVINKGRKGGEVLHMDPSQLTIAGWGGSKPYFNQKKSGIASRAVLDYGTGALMQRLLRLGLSVVLVPTLTPFPPPSRSASSASPHPHLPSFWGKNADAKMKGDEGTGRTSQEVIQSVMQASDDAACDVILWEETHTSAPGHTDTLSKHTYTKESSSKEKADKRANFLYARVEASSQIMKNWDTVFNCLTEDVRSSKSKRGWCFAELKTSCHHVVPAVSVSNYFENLSADQRLWSASSLQCRQKYKNRGT 773          
BLAST of EWM27516.1 vs. NCBI_GenBank
Match: gi|544210562|ref|XP_005535682.1| (hypothetical protein CYME_CME193C [Cyanidioschyzon merolae strain 10D] >gi|449015994|dbj|BAM79396.1| hypothetical protein CYME_CME193C [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 78.5666 bits (192), Expect = 8.247e-12
Identity = 57/147 (38.78%), Postives = 72/147 (48.98%), Query Frame = 0
Query:  268 AEASQHEGFVLVGRRLDMNVSIPKVPDDPPLTAEDLLAKDVNVRLHPPTGIDYFAFTANLLP-RSFPPFLIGRWRWDNTLLLHFLLS-KGASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAAST-AGSAHKLGRSDFTTYV 411
            A   Q   F + GRR D N+S P   D              N  LH   G+DYF       P +S PPF+IG WRWDN L  +F+   + A IDAT V+ ALH+  AP   A  A R GA YN+ L     +G    LGRSD + ++
Sbjct:  202 AARQQMGSFAVFGRRYDRNLS-PGASD--------------NEELHAAWGLDYFICRKQDFPVQSMPPFVIGNWRWDNWLADYFIRHPQIADIDATAVIRALHLSGAPHVPA--AERDGAVYNEGLVPRVDSGDFRDLGRSDNSNWI 331          
BLAST of EWM27516.1 vs. NCBI_GenBank
Match: gi|1084540627|gb|OGO00879.1| (hypothetical protein A2Y90_02810 [Chloroflexi bacterium RBG_13_52_12])

HSP 1 Score: 73.1738 bits (178), Expect = 2.534e-10
Identity = 39/103 (37.86%), Postives = 55/103 (53.40%), Query Frame = 0
Query:  266 PCAEASQHEGFVLVGRRLDMNVSIPKVPDDPPLTAEDLLAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHFLLSKGASIDATEVVHALH 368
            P     Q + F++VGRR D+++  P   + P   +   +      +LHPP+GIDYF F   L  R  PPF +GR  WDN L+    + K   IDAT V+ A+H
Sbjct:  100 PAIRQVQKQSFLIVGRRWDIDIKEPLDFNKPDWESNLRVRVTGEGKLHPPSGIDYFTFPRGLY-RDIPPFAVGRTAWDNWLIYRARVMKLPVIDATRVITAIH 201          
BLAST of EWM27516.1 vs. NCBI_GenBank
Match: gi|694526169|ref|XP_009492639.1| (hypothetical protein, variant 4 [Fonticula alba] >gi|627951150|gb|KCV72939.1| hypothetical protein, variant 4 [Fonticula alba])

HSP 1 Score: 71.2478 bits (173), Expect = 4.470e-9
Identity = 70/247 (28.34%), Postives = 113/247 (45.75%), Query Frame = 0
Query:  278 LVGRRLDMNVSIPKVPD-DPPLTAEDL-LAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHFLLSK-GASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAASTAGSAHKLGRSDFTTYVLKDGGMPEEE-DEVAPHHLALRLERRSHPLIHGQLAGLRVAARGFAFPNASHEERNAHV------QADENSGKTIFLLPVPAGEVASAMEWACWAGDMGLTNYLFVAASR 514
            +VG+R+D  +  P++ D + P+  ED     +   + H   GIDYF +      R  PPF++GR RWDN LL  F+ ++  A++DATEVV A+H+       +   +R+G  YN  L  S A    KLG  +   Y L    +P    + ++P +L       S     G       +A   A P  +   +   +      QAD  + + + +  V +G +  ++ W C    +G  N+LF A  R
Sbjct:    1 MVGQRID--ILYPRLIDFNNPMWREDFKRTVERYGKTHGKYGIDYFLYRTRY-ARPMPPFIVGRVRWDNWLLAQFIGNQNAAAVDATEVVFAVHLNHMKVGGSH--SRSGTDYNINLTKSDAVDPKKLGDVESCDYYL--APIPNSPGNALSPKNLPAGESAPSVFTRPGADFSTTSSAPSGACPFCTLRPKEQSIDVMLAKQADPQT-RDVIVATVNSGYLDFSINWMCTLLRIGRKNFLFHATDR 239          
BLAST of EWM27516.1 vs. NCBI_GenBank
Match: gi|694526181|ref|XP_009492643.1| (hypothetical protein H696_00498 [Fonticula alba] >gi|627951146|gb|KCV72935.1| hypothetical protein H696_00498 [Fonticula alba])

HSP 1 Score: 70.4774 bits (171), Expect = 9.339e-9
Identity = 49/138 (35.51%), Postives = 73/138 (52.90%), Query Frame = 0
Query:  278 LVGRRLDMNVSIPKVPD-DPPLTAEDL-LAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHFLLSK-GASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAASTAGSAHKLGRSDFTTYVL 412
            +VG+R+D  +  P++ D + P+  ED     +   + H   GIDYF +      R  PPF++GR RWDN LL  F+ ++  A++DATEVV A+H+       +   +R+G  YN  L  S A    KLG  +   Y L
Sbjct:    1 MVGQRID--ILYPRLIDFNNPMWREDFKRTVERYGKTHGKYGIDYFLYRTRY-ARPMPPFIVGRVRWDNWLLAQFIGNQNAAAVDATEVVFAVHLNHMKVGGSH--SRSGTDYNINLTKSDAVDPKKLGDVESCDYYL 133          
The following BLAST results are available for this feature:
BLAST of EWM27516.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 5
Match NameE-valueIdentityDescription
gi|585109782|gb|EWM27516.1|0.000e+0100.00hypothetical protein Naga_100101g13 [Nannochlorops... [more]
gi|544210562|ref|XP_005535682.1|8.247e-1238.78hypothetical protein CYME_CME193C [Cyanidioschyzon... [more]
gi|1084540627|gb|OGO00879.1|2.534e-1037.86hypothetical protein A2Y90_02810 [Chloroflexi bact... [more]
gi|694526169|ref|XP_009492639.1|4.470e-928.34hypothetical protein, variant 4 [Fonticula alba] >... [more]
gi|694526181|ref|XP_009492643.1|9.339e-935.51hypothetical protein H696_00498 [Fonticula alba] >... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3160rna3160Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications