rna3160, rna3160 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3160
Unique Name	rna3160
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2126
Alignment location	CM002460.1:878553..880874 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100101g13.9054.mrna
Orig protein id	gnl\|cribi\|Naga_100101g13.9054
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:878553..880874 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100101g13	gene3037	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3160	rna3160-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27516.1	cds3152	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:878553..880874+
coding sequence from alignment at CM002460.1:878553..880874+

mRNA sequence

>rna3160 ID=rna3160|Name=rna3160|organism=Nannochloropsis gaditana|type=mRNA|length=2126bp
CCTCAGGAAAAGTGTGTCATTAAGTGCTAATACCAAGCATGGCGGAGACA
AATGACCTCCAGGAAGATATAAACGAAGAATTTATCCTAAAACTCCTACA
CAAGATGACCCGGCAAGAAAAATTGATGCAAATTGGACAAGTCGACAAGG
CGTATATCAAAGAGAAAAACGACCTCGCCACGCTTGGGATCGGCAGCGTA
ATTAGTGGTGGATCAGGGCAGCCATTCGAAAATTCTCCTGCTGGATTTTG
CGAAATGATAGGCGATTATCAAGAAGCTGCGCTTCGATCTCGCCTGAAAA
TTCCATTGCTTTACGGTGGGGACGCGGTGCACGGCATGTCTCTGTCCAAG
GAAACCACCCTTTTCCCTCACAACATCGGTCTCGGGGCAGCCAATGATCC
CTCCTTAATAGAAGCCATTGCACGTGCCACAGCGATCGAAACATCATGCA
CAGGAGTTGTGTGGGCTTTCGCACCCTGTGTGGCCGTAGTGCGGGATTGT
CGGTGGGGTAGGACGTATGAGAGTTTCGGAGAGGACGCGGATGCAGTGAC
AGCCAATGGCGTTGCGCATATCAAAGGGCTGCAGGACACGGCTGCCCAGT
CGTGGGGCGTACGCATTCCGGGCACCGTAGCGGCGTGCGCTAAGCACTAC
GTAGGTGACGGTGCAGTTACGTTCGGAACGGGGCAAATGGGCGCCAAGAT
CCTCGACCGAGGCGATGTGCGGTTAGGCGAAGCGGAATTCGAAGAGCAAC
TGCGACCGTACAGGGAAGCAGTCAAAGCCGGGGTGATGAGTATCATGGTG
TCTTTCAGCAGTGTGCAAGGAAAGCAAATGCATGCCCACCGAGAATTGAT
CGAGGGCGTTCTGCGGCAGGAGCTGGGGTTCCAGGGCCTTGTCGTGTCAG
ATTGGGCGGGGCACGAACAGTTGCGAGACGGGGAAGGCCCGGTCGAGAAG
CTGGCTTTGTGCATTAATGCGGGCGTGGACATGATCATGATCCCCGAGCA
CTACCATGCCTACCAGGAGCATATGCAGGAGGCACTTGTCGGCGGCTTGA
TCTCTCCAGCTCGCCTTGACGAAGCATGTGCTCGTGTCCTGCGCCTCAAG
CACAAGCTTGGTCTCTTTTCTTTTCAAAATGCGCCTATACAGGACCAAAA
TCAAGCACTCCTCGCAAAAGTCCGCTGTCCCGCGCATCTTGCACTGGCCC
GCCGGGCCGTGCAAAAGTCCATCGTTTTGCTTAAAAACCGCGCTTGTGTA
CTCCCTTTGAGGAAACAGACCCTTCGGCACCTCTTCGTCTGCGGGAAGGG
CGCCGACGATCTGGGTTTGACCTGTGGAGGCTGGTCAACGTCGTGGCAGG
GAGCCTGTGGCCCCATCACAACTGGCACCACCATCCTCTCTGCGTTGCGA
GAAGGACTGCCAGATACTCAAGTAACATACGATGCCGCTGGCGAAGGTTT
TAAGCCAGATCAGCACCAGATGGTCATATTGGTGGTCGCCGAGGACCCAC
CCTACGCAGAATGGTTCGGTGATAGGACAGACTTGTACATAACAGCGCAG
GAGCAGCTGATGGTGGAGAGAGTGACGAATCGAGGTGTCCCCGTGATCGT
TGTGCAATTGGCTGGTCGCCCCCTACTCGACTGCGACAATTGGGCGAGGG
TTGATGCGTTGCTTCATGCATGGTTGCCAGGCAGCGAGGGAGGATATGGG
ATAGTGGACATTCTATGTGGTGATGCATGTCCTGACGGCAAAATGCCTTT
GGGCCTCCCAGAAGACCTGGATGTGCCAAAGGCCTCTCGGTGTATGTTTG
CGAAAGGCCGAGGAATGACATATGACGATGATGTCGTGCAAGGGAAAAAC
GTGCCTCAGCCTTTCTTGCAGCGGGAAGACACATGAGAAGTGCCGACATG
TCAAATAACATGGTGGTGTGACGCCAGCTGTCTTGGTGCATGCATCCTAC
CAGGCACAAACCTATAGTATTGTATTTTTCGCCCGCCCGCATCATTCTCC
CCTTCTTTTTCAAAGACAATTTTTAAACTTTGCAAAGTATTGACCAAAAT
CTAGACATTGATGACCTAAAAGTATTTCGAGTCGGACACTGCAAATTTCA
AGAAAGAGGCGTGTTTACATTTATAC

protein sequence of rna3160

>rna3160-protein ID=rna3160-protein|Name=rna3160|organism=Nannochloropsis gaditana|type=polypeptide|length=773bp
MALNSILVSTLGAVSVILVLSAFVTGGTFYNYIARHEQGIPEMFDSKASE
VSPSYSTLSRLPSLRGRYAVDKMAGSGSAPRRQPAKTENTSQVRRFLAFI
PLLGLKNDDWGSRESERLVLEAWNALANHVRLMNESVELRVVGMVEDASY
CDPRLFGPSASLASSAVSCLTLGPSCNQSGQKSAPTLDCIFEVATRVGDA
YGANVYILANGDVVFTPTFTEAIAFALNTFGNGPPVREGEEGVAPSPRLT
LQPPASASGASGFPPPCAEASQHEGFVLVGRRLDMNVSIPKVPDDPPLTA
EDLLAKDVNVRLHPPTGIDYFAFTANLLPRSFPPFLIGRWRWDNTLLLHF
LLSKGASIDATEVVHALHIGMAPFDSAEHATRAGAHYNDVLAASTAGSAH
KLGRSDFTTYVLKDGGMPEEEDEVAPHHLALRLERRSHPLIHGQLAGLRV
AARGFAFPNASHEERNAHVQADENSGKTIFLLPVPAGEVASAMEWACWAG
DMGLTNYLFVAASRNDSCAIEAALAVINKGRKGGEVLHMDPSQLTIAGWG
GSKPYFNQKKSGIASRAVLDYGTGALMQRLLRLGLSVVLVPTLTPFPPPS
RSASSASPHPHLPSFWGKNADAKMKGDEGTGRTSQEVIQSVMQASDDAAC
DVILWEETHTSAPGHTDTLSKHTYTKESSSKEKADKRANFLYARVEASSQ
IMKNWDTVFNCLTEDVRSSKSKRGWCFAELKTSCHHVVPAVSVSNYFENL
SADQRLWSASSLQCRQKYKNRGT

mRNA from alignment at CM002460.1:878553..880874+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3160 ID=rna3160|Name=rna3160|organism=Nannochloropsis gaditana|type=mRNA|length=2322bp|location=Sequence derived from alignment at CM002460.1:878553..880874+ (Nannochloropsis gaditana)
ATGGCATTGAATTCTATATTAGTGTCCACTTTGGGTGCTGTGTCGGTCAT
TCTTGTGTTAAGCGCTTTCGTCACAGGCGGCACCTTCTACAATTACATCG
CTCGCCATGAGCAGGGTATTCCGGAGATGTTTGACTCGAAAGCTAGTGAA
GTATCACCGTCATACTCGACCCTCTCTCGACTTCCCTCATTACGTGGACG
GTACGCAGTCGACAAAATGGCCGGATCCGGAAGTGCACCGAGAAGACAAC
CTGCCAAGACGGAGAATACGAGTCAAGTGCGAAGGTTTTTGGCTTTCATT
CCCTTGCTAGGCCTTAAAAATGACGATTGGGGAAGTCGAGAATCAGAGCG
CTTAGTGCTGGAGGCCTGGAATGCCTTGGCAAATCATGTGAGACTCATGA
ATGAGAGTGTAGAACTGCGGGTTGTGGGGATGGTAGAGGACGCTTCCTAC
TGTGACCCTCGCCTCTTCGGTCCTTCagcctccctcgcgtccaGCGCTGT
CTCCTGCCTGACGCTAGGTCCCTCTTGTAATCAATCCGGGCAAAAAAGCG
CTCCGACATTGGATTGCATCTTTGAGGTGGCCACGAGAGTGGGAGACGCC
TACGGGGCAAACGTTTACATCCTTGCCAATGGTGATGTCGTGTTCACACC
CACTTTCACAGAGGCGATCGCTTTTGCCTTGAACACCTTTGGAAACGGAC
CACCCGTAcgagagggcgaagagggcgtCGCACCATCGCCACGCCTTACA
CTCCAGCCTCCGGCGTCAGCATCAGGCGCGAGTggtttccctcccccttg
cgcGGAGGCCTCACAGCACGAAGGATTTGTGCTTGTTGGGCGGCGGCTGG
ACATGAACGTGAGCATACCCAAGGTTCCCGACGATCCCCCATTGACCGCA
GAAGATCTCCTGGCAAAAGACGTGAACGTCCGCCTTCATCCCCCCACCGG
CATCGACTACTTCGCCTTCACCGCCAACCTCTTGCCgcgttccttccctc
ccttcttgatCGGGCGATGGCGGTGGGACAacacccttctcctccacttc
ttgcTTTCGAAAGGGGCGAGTATCGACGCCACAGAAGTCGTCCACGCTTT
GCACATAGGAATGGCGCCTTTCGACTCGGCCGAGCATGCGACCCGCGCGG
GCGCCCACTACAACGACGTGctcgccgccagcaccgcgGGGTCGGCCCAT
AAATTGGGCCGGTCTGACTTCACGACTTATGTCCTCAAGGACGGGGGCAt
gccggaagaggaagacgaggttGCACCGCATCATCTGGCGTTGCGGCTGG
AACGCAGGTCTCATCCCTTGATCCACGGTCAGCTGGCTGGCTTACGAGTG
GCTGCGAGAGGCTTCGCTTTTCCCAATGCAAGCCATGAGGAGCGAAACGC
ACACGTGCAGGCGGATGAAAATTCAGGAAAGACAATTTTCCTGTTGCCCG
TACCGGCCGGGGAGGTGGCCTCGGCTATGGAGTGGGCGTGTTGGGCTGGA
GACATGGGCCTGACAAACTACCTCTTCGTGGCTGCCAGCAGGAATGACTC
GTGCGCCATCGAGGCTGCGCTCGCAGTCATCAATAAAGGTCGAAAAGGCG
GTGAAGTCTTGCACATGGACCCTAGTCAGTTGACCATTGCTGGTTGGGGC
GGGAGCAAGCCCTATTTCAATCAAAAAAAATCAGGGATCGCTTCGAGAGC
CGTCCTGGACTATGGGACTGGGGCATTGATGCAGCGCCTGTTGCGGTTGG
GACTTTCTGTGGTATTGGTGCCCACACTGACCCcgttccctccaccttca
cgGTCGGCTTCATCCGCGTCGCCGCATCCGCATCTTCCATCTTTTTGGGG
AAAAAATGCGGACGCAAAAATGAAAGGCGACGAGGGAACGGGTAGGACAT
CACAGGAAGTCATTCAAAGCGTGATGCAGGCCTCCGACGATGCAGCGTGT
GATGTGATACTGTGGGAGGAAACGCATACGAGCGCTCCAGGGCATACAGA
CACGCTGAGCAAGCATACATATACGAAAGAATCGTCATCCAAGGAAAAGG
CTGACAAGCGGGCAAATTTTTTGTACGCTCGGGTGGAGGCATCGAGCCAA
ATCATGAAAAATTGGGATACTGTCTTCAATTGCCTGACGGAGGACGTACG
GAGTAGCAAAAGCAAAAGGGGTTGGTGCTTTGCGGAGTTGAAAACTTCTT
GCCATCATGTTGTACCGGCGGTCTCTGTTTCGAATTATTTTGAAAACTTG
TCGGCAGATCAGCGGTTGTGGAGTGCTTCCTCGTTGCAGTGTCGACAAAA
ATACAAGAACCGAGGGACTTGA

Coding sequence (CDS) from alignment at CM002460.1:878553..880874+

>rna3160 ID=rna3160|Name=rna3160|organism=Nannochloropsis gaditana|type=CDS|length=2322bp|location=Sequence derived from alignment at CM002460.1:878553..880874+ (Nannochloropsis gaditana)
ATGGCATTGAATTCTATATTAGTGTCCACTTTGGGTGCTGTGTCGGTCAT
TCTTGTGTTAAGCGCTTTCGTCACAGGCGGCACCTTCTACAATTACATCG
CTCGCCATGAGCAGGGTATTCCGGAGATGTTTGACTCGAAAGCTAGTGAA
GTATCACCGTCATACTCGACCCTCTCTCGACTTCCCTCATTACGTGGACG
GTACGCAGTCGACAAAATGGCCGGATCCGGAAGTGCACCGAGAAGACAAC
CTGCCAAGACGGAGAATACGAGTCAAGTGCGAAGGTTTTTGGCTTTCATT
CCCTTGCTAGGCCTTAAAAATGACGATTGGGGAAGTCGAGAATCAGAGCG
CTTAGTGCTGGAGGCCTGGAATGCCTTGGCAAATCATGTGAGACTCATGA
ATGAGAGTGTAGAACTGCGGGTTGTGGGGATGGTAGAGGACGCTTCCTAC
TGTGACCCTCGCCTCTTCGGTCCTTCagcctccctcgcgtccaGCGCTGT
CTCCTGCCTGACGCTAGGTCCCTCTTGTAATCAATCCGGGCAAAAAAGCG
CTCCGACATTGGATTGCATCTTTGAGGTGGCCACGAGAGTGGGAGACGCC
TACGGGGCAAACGTTTACATCCTTGCCAATGGTGATGTCGTGTTCACACC
CACTTTCACAGAGGCGATCGCTTTTGCCTTGAACACCTTTGGAAACGGAC
CACCCGTAcgagagggcgaagagggcgtCGCACCATCGCCACGCCTTACA
CTCCAGCCTCCGGCGTCAGCATCAGGCGCGAGTggtttccctcccccttg
cgcGGAGGCCTCACAGCACGAAGGATTTGTGCTTGTTGGGCGGCGGCTGG
ACATGAACGTGAGCATACCCAAGGTTCCCGACGATCCCCCATTGACCGCA
GAAGATCTCCTGGCAAAAGACGTGAACGTCCGCCTTCATCCCCCCACCGG
CATCGACTACTTCGCCTTCACCGCCAACCTCTTGCCgcgttccttccctc
ccttcttgatCGGGCGATGGCGGTGGGACAacacccttctcctccacttc
ttgcTTTCGAAAGGGGCGAGTATCGACGCCACAGAAGTCGTCCACGCTTT
GCACATAGGAATGGCGCCTTTCGACTCGGCCGAGCATGCGACCCGCGCGG
GCGCCCACTACAACGACGTGctcgccgccagcaccgcgGGGTCGGCCCAT
AAATTGGGCCGGTCTGACTTCACGACTTATGTCCTCAAGGACGGGGGCAt
gccggaagaggaagacgaggttGCACCGCATCATCTGGCGTTGCGGCTGG
AACGCAGGTCTCATCCCTTGATCCACGGTCAGCTGGCTGGCTTACGAGTG
GCTGCGAGAGGCTTCGCTTTTCCCAATGCAAGCCATGAGGAGCGAAACGC
ACACGTGCAGGCGGATGAAAATTCAGGAAAGACAATTTTCCTGTTGCCCG
TACCGGCCGGGGAGGTGGCCTCGGCTATGGAGTGGGCGTGTTGGGCTGGA
GACATGGGCCTGACAAACTACCTCTTCGTGGCTGCCAGCAGGAATGACTC
GTGCGCCATCGAGGCTGCGCTCGCAGTCATCAATAAAGGTCGAAAAGGCG
GTGAAGTCTTGCACATGGACCCTAGTCAGTTGACCATTGCTGGTTGGGGC
GGGAGCAAGCCCTATTTCAATCAAAAAAAATCAGGGATCGCTTCGAGAGC
CGTCCTGGACTATGGGACTGGGGCATTGATGCAGCGCCTGTTGCGGTTGG
GACTTTCTGTGGTATTGGTGCCCACACTGACCCcgttccctccaccttca
cgGTCGGCTTCATCCGCGTCGCCGCATCCGCATCTTCCATCTTTTTGGGG
AAAAAATGCGGACGCAAAAATGAAAGGCGACGAGGGAACGGGTAGGACAT
CACAGGAAGTCATTCAAAGCGTGATGCAGGCCTCCGACGATGCAGCGTGT
GATGTGATACTGTGGGAGGAAACGCATACGAGCGCTCCAGGGCATACAGA
CACGCTGAGCAAGCATACATATACGAAAGAATCGTCATCCAAGGAAAAGG
CTGACAAGCGGGCAAATTTTTTGTACGCTCGGGTGGAGGCATCGAGCCAA
ATCATGAAAAATTGGGATACTGTCTTCAATTGCCTGACGGAGGACGTACG
GAGTAGCAAAAGCAAAAGGGGTTGGTGCTTTGCGGAGTTGAAAACTTCTT
GCCATCATGTTGTACCGGCGGTCTCTGTTTCGAATTATTTTGAAAACTTG
TCGGCAGATCAGCGGTTGTGGAGTGCTTCCTCGTTGCAGTGTCGACAAAA
ATACAAGAACCGAGGGACTTGA

Synonyms

Publications