rna3124, rna3124 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna3124
Unique Name	rna3124
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	4296
Alignment location	CM002460.1:779029..780638 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100015g35.6384.mrna
Orig protein id	gnl\|cribi\|Naga_100015g35.6384
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:779029..780638 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100015g35	gene3002	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna3124	rna3124-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27568.1	cds3116	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:779029..780638+
coding sequence from alignment at CM002460.1:779029..780638+

mRNA sequence

>rna3124 ID=rna3124|Name=rna3124|organism=Nannochloropsis gaditana|type=mRNA|length=4296bp
ATGCAAGCAACCATCCTATTTCTGGCCTCGAGTCACCACTTGCGCGCACC
GGAGCTGTACGCCAGCATATCAAGAGGGGAAGCTGCCTGTCTGAGTCCAA
TACTCGAAAGTATGGAATCTCCCGCGACATGCCCCACGTCAGCTATCAAT
GCTTCATCAATTTTCATGGCGGCTGCATGTAACTCCTTCAGCCAGTGTCT
GGACTGGGCACAGGGAACTCCTGAGCCTTGCGAGGCCCTAAAAGAGAAAC
TAGTCGTGGCATACGGCGCACATGACTGGGTGGCCATAACGACGGCAGAC
GGGGCTGTGCGCCATTGCCTGCGCGGGCATAAGGCAAAAGTACATTGCGT
TGCTTGGTTGATTCCAAGCCGTTTTCTCGTCTCGGGTGCTGCGGACGGTC
AAGTCCGTGTTTGGAGCATAAATGAGGACGGATCAAGTTGGACATGCTCG
CAGGTCCTGTACCCGGACACGGAGGAAGGAGAGGCATGCGTCAACCGTCT
TGCGGTCCTCGACGGGGAGCTCATCGCTGCAGCCACCACTCTCTCGGTGA
CTCTCTGGCACTGTAGTATCAAGTCAGGACCGGGTGGGCGTTGGACGCAG
GTGTTCTCGACGGCCATGCCCCCCGCCCAGATCCCCTGCGCGGTGGCCTT
GGCGCCCTTGGTGAGGAGACGAGGAGACGCTCCGCACGCAGAGCTGGCAT
TACTGATCGGAGGGGTGGACGGTAAGATTCACGTGTGGAACGGCACGGGG
CTGAGAAGAGGACAGGAAGGGTGTGAGGAGGAGGGACAGGAGAGCGCGGG
GAGCTGGTCGTGGAGGAGCGCCGGGGCTCTGACCGGGCATCAGGCGTGGG
TGCGGTGTCTGGCGTGGAGATCGCTGCGAGAGGAGGGAGAAGGGGAGGGA
GAAGGGGTCATGGTGGCCTCCGGGTCGCAGGACGGCAAGATTCGGCTTTG
GCGGGTCGGGGCCATGGAGGGCGCCGAGGGGATAAGACCGGGTCGAGGGG
AGGAGGAGGCGGAGGAGGCGGGGGAGGGGGAGGGTCGGCTCAGGGTGGAG
GAGGAGGAGGATGACCACGAGGTCCGCTTGGTGATGGAGGGGGCCGGGTG
CAGGTACGGCATCCGCCTCGATGCCCTGCTGGTGGGCCATGAGGATTGGA
TCACGGGCCTCGCGTGGCGTCCCCACGGATACCCGGATGTTGGAAAGAAG
AGGCAGTCCCTCGCTTTGCTCTCGTGCTCCATGGACAGGAGCCTGATCAT
CTGGAGGCCTGAGGGGGCGCGGGGGGCGTGGACCCCGCGCGTGCGGCTCG
GGGACCTGGGCGCCGATTTGGGTGGGGCGGTGGGAGGCAATTTACTGGGC
TTTCTGGGCTGTGTCTTCAGTGAGACGGGCGACAGGGTTCTCGCGCATGG
CTTCGGCGGGTCTTTCCACGCCTACGAGTGTGACAGGAGGGCGGAGGGGG
GGGGCGGGGCGGAGGAAGAAGAGGAGGGGGAGGAAAGGGAGTCACGATGG
GTCCCTATGCCTTTCGCCACGGGCCACTTCGAAGAGGTGAGCGATGTGCA
ATGGGAGCGGCCTGGAGGAGGCGTTGGCGGAGGACGATACCTGGTGAGTG
TGAGCAAGGATCAGACCACGCGCCTGTGGGCCGTGGCCTCCCAGACGCGC
CGGCTCCACGAGATGTCGCGGGTCCAGGTTCATGGCTACGACTTGAGCTG
TTGCGACATGCTCCCGCCGCGACGGCAGGGACCCGGCGACGAGGAGGTCT
GGCAAGAGCACCGCTTGGTCTCGGGGGCGGACGAGAAGACGCTGCGGGTC
TTCGACGCCCCCCGGAAAGTGCTCGGCCTCTTGGCGGCCCTGGCGGGGAT
CCAATCCGCCCAGCCTGCCCGCATTGAGACGGCCTACATCCCCGCCTTGG
CCCTGTCGAGCAAGGCGGTGGGCGTCACTGCATCCTCTTCCTCGACCGTG
GCCCATGTGCAGGGTGTGGAGGCGGGGGCGGGGAGGGAAGAGGCCTGGAA
GGCAGGATCGGCCGTCGGGGGGGGGGGGCTGGGAAAGGAGGACGCCGAGG
CGGAAGCCAAGGCTCGAGCCCGTGTCTCGTGGGAGGGCCGGGGCGCCAAC
CCGTCCTTGCTGGAGGGCGAGCTCGTGGACCACACGCTTTGGCCGGAAGT
GGCCAAGTTGTACGGGCACGGGGACGGGATCATGTGCCTGGCCGCAGACC
CAACGGGGCAAATCGTGGCCTCCGCCTGCAAGGCCCGCGACGCCGAGACA
GCACAAGTCCGGTTGTGGGACACGGGGAGCTGGCGCGGGGTCGGGGTCTT
GCCCGGGCACGCCTCTACGGTCGTGCAGTTGGCTTTCTCGCACGACGGCT
CCCTGCTGGCGAGTGTGTCCAAGGACAGGCAGGTCTGCCTCTACGCTAGG
GAGGAGGACGGGGAGGGACCGCGCGCGGGGGCCTTTAGGCCGGTGCAGAC
GCTGGCCCGTGCGCACAAGCGTATCATCTGGTCCTGCGACTGGGCCCACG
ATGACGCCTTGCTGGCCACGGCCTCCAGAGACGGGGTGGTAAAAATTTGG
GGACGGCAGGGGGAGGGGGGAGTCATGTGGCGCGACCAGGTCTTACCGGT
GCTTGGACCGGAGGCCCTGGCCAGCTTCAAGCCCAGCACGAGCGAAACGG
ACGCGGTCACGGCCGTGGCCTTCGCACCCCGCTTGGTCCAGGGGGCCGAC
GTGGCCGGCTATCTGCTCGCGCTGGGCACAGAGAGTGGTAACGTGGAGTT
GTGGACCGGTACCAAGGATAAGGGCAAGTCCTGGCGCTGCCTCCTTGCGT
TCGACGGAAGCCTGCCCCACGCTGGAGCGGTGCGCCGGCTCCGCTGGAAA
CCTCTCTCGTCCGCGCAGGATGGTGATGAGAAGACCTCGTTGATCTTAGC
CAGCTGTGGGACCGACCATGCCGTGAAAATAGCCAGGATCCGGCACCTCG
TTCATTTGAATCATCCCCCTCCTAGACAATGTTATGAGGACACACTCAAC
ATTCAAATTCTCCTTCCATTACCCCGCACAGACGCGGCTTCGATGCGCAG
GCTCTGTTTCTCCTATCCAAGTGCCAGCATAATTATAGTCGCCCTGGCCC
TGGTACCATCCTCTCTTTCCTCCCAACGAATTCCGTCCTTCTGCCTTCGA
GAAGCAAGTCACCAAGGGATATTACGGCGCCGGTGCACCCCCGTGCTCCG
CACACGGATGCGCCTGTCCGTAACTACACCGTCCATGGCCGCTCAGCCTC
ATTCAACTACAACCCGGCCGGCCTTCCCAGCAGCGACCGCATTGCATCGC
GCTTCTGGTACCATCCTGCTCCTCGCCACGACTGAGGACAAGGCCTCCGT
GAACATGCTCCAAGCTCTCCTTGCCAGAGGAGGCTGGGAAGAGACCACAC
CCGTGGACGCATCTTCCCGCGTGTGGCACCGTCCGGACGGGCCCCAAAAT
GTCTTTATGTGGCAAATAACGCAAGGTTTTTTGCGGGCGGACTGGCTGGA
TAAGGCTTGGCTCACCGCCCACCCCTCACAGCGGATCCAAGAAATGATAT
TTCTGAGCCGGCACGCCGCCGCCAGTGGACGGCCCTCGCTCACTATCCAT
CCCATAGGAAATCCTGGCCAGCCCTTTGCGCCACAGGAAGGAGCTCGGGG
AGCGCATGGCGGCATCCCTGGACGGTGTGTCCCTCCTTCTCCACGCATGG
CCCCGCTTTTTAGACAGTTGCATAGGGCCGTTCAAGACGCAGGACTGGCG
GGAACTTTTGAAGTGACGTTGGAGGCCACCCATCACGGGCCATGGCATAT
GCATCCAACAATGTTTGTGGAAATTGGTTCTAAGGAGGAAGATTGGGGCC
GGGAGGATGCTGCACATGTGTGGGCGGATGTTCTCGATAAGAATTTGGGC
TTGAGTGCGACTGAAGCGAATGGAGTGAGAATCCCTGCTGTGGAGGAGTC
CAAGCTAGTGATAGTCGGCGCGGGGGGGGGGCATTACACCCCTAAAATGA
ATGACCTTCTCCGCCACCGTGAAGACGTCCTCCTGGGCCACATTCTGGCC
TCGTATTGTTTCACTGGATCTGAAGAAGACTGGAAACGCGGGATAGATGA
GGCCATTGAGGCAACTCGTCGAGCCTACAGTTTGCCATCTGAAAATGCAG
AAGAGGAGGACGGTGGCAAGGAGGAAACTCGCGTGTGCGTGTATATTGAC
AAGAAGGCGTTTAAAAGTGCTCCGCGACAAGCTTTAGTACAGTATTTGGA
ATCCAGAGGGATTCAGTGTGCCTTCAAGGAAAATGACTTGAATTGA

protein sequence of rna3124

>rna3124-protein ID=rna3124-protein|Name=rna3124|organism=Nannochloropsis gaditana|type=polypeptide|length=289bp
MSGGCPLRVLLRPLLLCAILSRRIVSFSTRRPLFCARPSTSAFDWSSNKH
SIATIYPSTSYKLSALSSTPWPLPEVEARAALPSTRRAARDVSMAKLAKI
TGGAAPAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTA
TPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPL
LHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVD
AGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVKKA

mRNA from alignment at CM002460.1:779029..780638+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna3124 ID=rna3124|Name=rna3124|organism=Nannochloropsis gaditana|type=mRNA|length=1610bp|location=Sequence derived from alignment at CM002460.1:779029..780638+ (Nannochloropsis gaditana)
GTTCGTGTTACTCGGACGCAGGCAATTACCGGTGACTTTTATTGTGTGGA
AAGCGGCGCTCGCTGCCGTCTCGCCCCCAGGCTGACGAATGCGGTGAGGC
GGCGAGTTGTTCGGGGATGCTTACACCACACAAAAAATCacgtgtttttt
ttcctggaGAAACACGTGACAAGTGGTGACTCGAGGCCAGAAATAGGATG
GTTGCTTGCATTGTGCAGCACCTAAattgcttcctttttccacttgcttc
cctcgccctttcgCTTCATATGCGATTCCCGTTATTCCTTCACACTCACT
TGTACGACCTCCGCCACCCCCCACAGCATTCTGCTGTGATTCAACCCTGT
CTATAATTCGTAATGTCTGGTGGTTGCCCGCTGCGAGTCTTACTGCGTCC
CCTCCTGCTGTGCGCCATCCTTTCCCGACGAATCGTCTCCTTCAGTACCC
GGCGTCCTCTGTTTTGCGCCCGTCCGTCAACCTCCGCCTTTGATTGGTCT
TCAAATAAGCACTCGATAGCCACCATTTATCCCTCTACTAGTTACAAGCT
GAGTGCCTTGTCTTCGACGCCGTGGCCTTTACCGGAAGTGGAGGCACGGG
CCGCACTCCCAAGCACACGTCGAGCAGCCCGTGACGTTTCCATGGCCAAA
CTTGCAAAGATAACCGGCGGTGCCGCGCCCGCTGTCGAGACGAGTCAAAA
GCAATCATTCTCCCTGTCAGCACTGTggggggtggtgggggttGTGGCTA
TGCTCAGCAACGCCATCCGTCGACTCTTGCCCATCGCCCTGGAGCCTTTC
AAGAAGACGGCGACCCCTACGGCCTTCACACCTCTCCACTGGGCGCAATA
CGTGGGATTTGCTCTCATCATGGCATATGCAGAGGGCTACAAAGGCTTCC
AGCTCAAATTCTCCCCGCTGGTAGTAAAACGCGCCCTCACCCTGggtcct
cgctcccccctcctccacaaggTCCTGGCGGCCCCCTACAGCATGGGCCT
CTTCCACGCGAGTAAAAAACGACAAATCGTGTCGTGGACGATCGCCTTGG
GTGTGATCGGCCTCGTGAAAGCGGTCAAGACGCTGGCCTTCCCCTACCGG
TCCATCGTGGACGCGGGCGTGGTGGCAGGCCTTTCCTGGGGCGCCCTATC
CATCGCGGGGATCTACGCGCAGGCCCTTCGGGGACATGTTCCGAGCATAG
ACCCAGCCTTGCCGGACGTGAAGAAGGCGTAAGGGGGGTATAGGACGGAT
GCAGGGAGGGTATCTCGGAGGGGTCGGGCGAAAGCAACGGGCAGGAGGTT
TGGACCCGGCGACATGCTGATCGAGGAAATAGATTCGAAGCCCATGCTTA
ACAGTGCCTCGGATGGAGGTACCCCGTTAAGGATCGTGGGCGGCATCACG
AGGCAGGAATGAATGCAATACTCTGGGGACGAGGgctctcctgctccttg
taGGGGGCTGTGGGTAGGACCACAGTGGGGGCGCTAGCGGAAATTTTGAT
ACCATGAGAAAGAAACGAAGATCACGACCATTGGCGTGTGCCTCTTGTTG
ACATGTGTGCGGGATTGTAGACGCTCGTGAGATTGGAAACGGAGAGCGCG
ATGCCAAGCA

Coding sequence (CDS) from alignment at CM002460.1:779029..780638+

>rna3124 ID=rna3124|Name=rna3124|organism=Nannochloropsis gaditana|type=CDS|length=870bp|location=Sequence derived from alignment at CM002460.1:779029..780638+ (Nannochloropsis gaditana)
ATGTCTGGTGGTTGCCCGCTGCGAGTCTTACTGCGTCCCCTCCTGCTGTG
CGCCATCCTTTCCCGACGAATCGTCTCCTTCAGTACCCGGCGTCCTCTGT
TTTGCGCCCGTCCGTCAACCTCCGCCTTTGATTGGTCTTCAAATAAGCAC
TCGATAGCCACCATTTATCCCTCTACTAGTTACAAGCTGAGTGCCTTGTC
TTCGACGCCGTGGCCTTTACCGGAAGTGGAGGCACGGGCCGCACTCCCAA
GCACACGTCGAGCAGCCCGTGACGTTTCCATGGCCAAACTTGCAAAGATA
ACCGGCGGTGCCGCGCCCGCTGTCGAGACGAGTCAAAAGCAATCATTCTC
CCTGTCAGCACTGTggggggtggtgggggttGTGGCTATGCTCAGCAACG
CCATCCGTCGACTCTTGCCCATCGCCCTGGAGCCTTTCAAGAAGACGGCG
ACCCCTACGGCCTTCACACCTCTCCACTGGGCGCAATACGTGGGATTTGC
TCTCATCATGGCATATGCAGAGGGCTACAAAGGCTTCCAGCTCAAATTCT
CCCCGCTGGTAGTAAAACGCGCCCTCACCCTGggtcctcgctcccccctc
ctccacaaggTCCTGGCGGCCCCCTACAGCATGGGCCTCTTCCACGCGAG
TAAAAAACGACAAATCGTGTCGTGGACGATCGCCTTGGGTGTGATCGGCC
TCGTGAAAGCGGTCAAGACGCTGGCCTTCCCCTACCGGTCCATCGTGGAC
GCGGGCGTGGTGGCAGGCCTTTCCTGGGGCGCCCTATCCATCGCGGGGAT
CTACGCGCAGGCCCTTCGGGGACATGTTCCGAGCATAGACCCAGCCTTGC
CGGACGTGAAGAAGGCGTAA

Synonyms

Publications