EWM27568.1, cds3116 (CDS) Nannochloropsis gaditana

Overview
NameEWM27568.1
Unique Namecds3116
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:779391..780260 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27568.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100015g35.6384.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:779391..780260 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|585109835|gb|EWM27568.1| (hypothetical protein Naga_100015g35 [Nannochloropsis gaditana])

HSP 1 Score: 574.318 bits (1479), Expect = 0.000e+0
Identity = 289/289 (100.00%), Postives = 289/289 (100.00%), Query Frame = 0
Query:    1 MSGGCPLRVLLRPLLLCAILSRRIVSFSTRRPLFCARPSTSAFDWSSNKHSIATIYPSTSYKLSALSSTPWPLPEVEARAALPSTRRAARDVSMAKLAKITGGAAPAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVKKA 289
            MSGGCPLRVLLRPLLLCAILSRRIVSFSTRRPLFCARPSTSAFDWSSNKHSIATIYPSTSYKLSALSSTPWPLPEVEARAALPSTRRAARDVSMAKLAKITGGAAPAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVKKA
Sbjct:    1 MSGGCPLRVLLRPLLLCAILSRRIVSFSTRRPLFCARPSTSAFDWSSNKHSIATIYPSTSYKLSALSSTPWPLPEVEARAALPSTRRAARDVSMAKLAKITGGAAPAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVKKA 289          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|223999317|ref|XP_002289331.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220974539|gb|EED92868.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 176.792 bits (447), Expect = 1.470e-50
Identity = 101/203 (49.75%), Postives = 128/203 (63.05%), Query Frame = 0
Query:   88 AARDVSMAKLAKITGGAAPAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQAL-RGHVP-SIDPALPDVKK 288
            AA   +   LA   GG A   + +   S  L++LWG  GV  +L  AI+R++PIALEPFK        T    A Y+   L  AY EGYKGFQ KFSPLVV R+ TL   SP  H + A  YSMGLFHA+KKR IVSW++++GV  +V AVK L +P+R+IVDAGVV GLSWG +SI G Y  +L  G  P  +DP+LP+ K+
Sbjct:   72 AASQRTPTSLANGGGGEAIGQDLNLTTSKVLASLWGTSGVAYILLKAIKRVVPIALEPFKGEGV-VPLTQFQLAAYIITCLWFAYVEGYKGFQRKFSPLVVSRSFTLQSTSPFHHLLFAPFYSMGLFHATKKRMIVSWSVSIGVAAIVAAVKRLPYPWRNIVDAGVVIGLSWGTISIIGGYVISLVTGIAPIDVDPSLPESKE 273          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|551536295|ref|XP_005756872.1| (hypothetical protein EMIHUDRAFT_121633 [Emiliania huxleyi CCMP1516] >gi|551603490|ref|XP_005783251.1| hypothetical protein EMIHUDRAFT_113082 [Emiliania huxleyi CCMP1516] >gi|485603916|gb|EOD04443.1| hypothetical protein EMIHUDRAFT_121633 [Emiliania huxleyi CCMP1516] >gi|485636225|gb|EOD30822.1| hypothetical protein EMIHUDRAFT_113082 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 174.096 bits (440), Expect = 3.315e-50
Identity = 103/212 (48.58%), Postives = 126/212 (59.43%), Query Frame = 0
Query:   80 AALPSTRRAARDVSMAKLAKITGGAAPAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSP---LLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVKK 288
            +A P+  RAAR    A L   +  A+P       +   L   WGV G + +L+ AI RL PIA++P  +       T L W  Y G     AY EGYK FQ KFSPLVV+RA+TL  RSP   LLH  LA  YSMGLFHASKKR+ VSW+I+LGV  ++  VK L +P+RS+VDAGV  GL WG  SI  IY +AL G  P +DP LP   K
Sbjct:   18 SARPAIGRAAR----ADLIAASASASPVPTADAARG--LRTAWGVCGFLGILAQAIGRLAPIAMQPILQRD----ITMLQWGLYGGTMAFFAYTEGYKAFQCKFSPLVVQRAMTLSTRSPPPPLLHSALAPFYSMGLFHASKKRKTVSWSISLGVACIIGLVKRLPYPWRSVVDAGVCTGLLWGGTSIGVIYLRALAGKSPGVDPELPKEDK 219          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|922863742|gb|KOO31125.1| (hypothetical protein Ctob_002280 [Chrysochromulina sp. CCMP291])

HSP 1 Score: 166.392 bits (420), Expect = 4.811e-47
Identity = 89/182 (48.90%), Postives = 120/182 (65.93%), Query Frame = 0
Query:  104 AAPAVETSQKQSFSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPD 285
            AA A   + + +  ++  WGV G + +L++AI+RL PIA++PF +       + L W  Y G   I AY EGY  FQ KFSPLVV+RA+TL   +  +H  LA  YSMGL HA+KKR+IVSW++++ V  +V  VK L +P+RSIVDAGV  GL+WGA+SI  IYA+AL G  P +DP LP 
Sbjct:   42 AAKASPAAPRNAHGIAVAWGVCGFLGILASAIKRLAPIAMQPFLQRD----LSWLQWGFYGGSMGIFAYVEGYGAFQKKFSPLVVERAMTLKQSTSPVHIALAPFYSMGLMHATKKRKIVSWSVSMSVAMVVGIVKRLPYPWRSIVDAGVCTGLAWGAVSIVIIYARALAGTPPGVDPCLPS 219          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|219119275|ref|XP_002180401.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217407874|gb|EEC47809.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 165.236 bits (417), Expect = 4.483e-46
Identity = 94/186 (50.54%), Postives = 125/186 (67.20%), Query Frame = 0
Query:  119 SALWGVVGVVAMLSNAIRRLLPIALEPFKKTATP---------TAFTPLH--WAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPR---SPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQA-LRGHVP-SIDPALPDVKK 288
            +++WG  GV+ +L+ AI+R+LPIALEPF   A P          + +  H  ++ Y+   L  AY EGYKGFQLKFSPLVVKR+ TL P    +   H VLA  YSMGL HA+KKR+I+SW++++GV G+V AVK   +P+R+IVDAGVV GL+WG+LSI  IY ++ + G  P  ID ALP  KK
Sbjct:   87 ASIWGTGGVLYILAKAIKRVLPIALEPFVAGAVPLNQVQLGTLVSHSTFHLRYSAYIATCLWFAYVEGYKGFQLKFSPLVVKRSFTLVPGKNGTSWYHFVLAPFYSMGLVHATKKRKIISWSVSIGVAGIVAAVKRFPYPWRNIVDAGVVVGLTWGSLSILLIYIKSWMIGQPPQQIDAALPTAKK 272          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|397644102|gb|EJK76252.1| (hypothetical protein THAOC_01998 [Thalassiosira oceanica])

HSP 1 Score: 168.703 bits (426), Expect = 5.703e-44
Identity = 93/171 (54.39%), Postives = 115/171 (67.25%), Query Frame = 0
Query:  118 LSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGP-RSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQA-LRGHVP-SIDPALPD 285
            +S+LWG VGV  +L  AI+R++PIALEPF K       T      YV      AY EGYKGFQ KFSPLVV R+ TL P +SP+ H +LA  YSM LFHA+KKR IVSW++ +GV  +V  VK   +P+R+IVDAGVV GLSWG +SI G YA + L G  P  +DPALP+
Sbjct:  535 VSSLWGAVGVSYILLKAIKRVVPIALEPFGKGEGVIPLTRSQLIAYVATCFGFAYMEGYKGFQRKFSPLVVSRSFTLQPGKSPIHHLLLAPFYSMALFHATKKRMIVSWSVTIGVAAIVALVKRSPYPWRNIVDAGVVVGLSWGTISILGGYAISLLTGIAPIGVDPALPE 705          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|1210518283|dbj|GAX22895.1| (hypothetical protein FisN_24Lh182 [Fistulifera solaris])

HSP 1 Score: 155.992 bits (393), Expect = 9.719e-43
Identity = 84/171 (49.12%), Postives = 114/171 (66.67%), Query Frame = 0
Query:  118 LSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPR---SPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQA-LRGHVPSIDPALP 284
              ++WG  GV+ +L+ AI+R++PIA EPF   A P   T      Y+   L  AY EGYKGFQ KFSPLVV R+ TL P    +   H +LA  YSMG+ HA++KR IVSW++ +GV  +V  VK   +P+R+IVDAGVVAGL+WG+LSI  +Y +A ++G  P++D ALP
Sbjct:   66 FGSIWGTGGVLYILAKAIKRVMPIAQEPFLAGAVP--LTQFQLGAYIVTCLWFAYVEGYKGFQQKFSPLVVTRSFTLIPGKNGTQWYHFLLAPLYSMGMIHATRKRAIVSWSVTMGVAAIVALVKRFPYPWRNIVDAGVVAGLTWGSLSILFLYIRAWMQGKPPAVDAALP 234          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|1210523428|dbj|GAX17752.1| (hypothetical protein FisN_24Hh182 [Fistulifera solaris])

HSP 1 Score: 154.451 bits (389), Expect = 5.529e-42
Identity = 83/171 (48.54%), Postives = 113/171 (66.08%), Query Frame = 0
Query:  118 LSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPR---SPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQA-LRGHVPSIDPALP 284
              ++WG  GV+ +L+ AI+R++PIA EPF   A P   T      Y+   L  AY EGYKGFQ KFSPLVV R+ TL P    +   H + A  YSMG+ HA++KR IVSW++ +GV  +V  VK   +P+R+IVDAGVVAGL+WG+LSI  +Y +A ++G  P++D ALP
Sbjct:   87 FGSIWGTGGVLYILAKAIKRVMPIAQEPFLAGAVP--LTQFQLGAYIVTCLWFAYVEGYKGFQQKFSPLVVTRSFTLIPGKNGTQWYHFLFAPLYSMGMIHATRKRAIVSWSVTMGVAAIVALVKRFPYPWRNIVDAGVVAGLTWGSLSILFLYIRAWMQGKPPAVDAALP 255          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|299117526|emb|CBN75370.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 154.066 bits (388), Expect = 2.376e-41
Identity = 90/189 (47.62%), Postives = 115/189 (60.85%), Query Frame = 0
Query:  116 FSLSALWGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGP----------------RSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPDVKK 288
            F +++ WGVV VV +L NA++RL PIA++PF + +                           GFQ KFSPLVVKRALTL                  R+  L  +LA PYSMGLFHA+KKR+ VSW++  GV+ LV+ VK L +P+RSIVDAGVV GLS+G LSI  I+A+A+ G  PSIDPALP+ KK
Sbjct:  149 FGVASAWGVVSVVFILMNAVKRLAPIAMQPFSRASL--------------------------GFQKKFSPLVVKRALTLDQAAAAVPAADGGQKRRRRAGPLRLLLAGPYSMGLFHATKKRKTVSWSLTAGVLCLVQMVKRLPYPWRSIVDAGVVVGLSYGTLSICVIWARAILGKAPSIDPALPEEKK 311          
BLAST of EWM27568.1 vs. NCBI_GenBank
Match: gi|1100142198|emb|SFD59587.1| (hypothetical protein SAMN02745121_00799 [Nannocystis exedens])

HSP 1 Score: 142.124 bits (357), Expect = 5.834e-38
Identity = 77/164 (46.95%), Postives = 103/164 (62.80%), Query Frame = 0
Query:  122 WGVVGVVAMLSNAIRRLLPIALEPFKKTATPTAFTPLHWAQYVGFALIMAYAEGYKGFQLKFSPLVVKRALTLGPRSPLLHKVLAAPYSMGLFHASKKRQIVSWTIALGVIGLVKAVKTLAFPYRSIVDAGVVAGLSWGALSIAGIYAQALRGHVPSIDPALPD 285
            WG++GVVA+L +AI RL P+A+EP          TPL WA YVG++L   YAEGYKGFQ  F P  V RA  L      LH  LA  + MGLF+A++KR ++SW + +GV  LV  V+ L  P+R IVDAGVV GLS+G +++   +   LRG   ++ P +PD
Sbjct:   33 WGMLGVVALLVSAIVRLTPLAVEPLT-----VGMTPLQWALYVGWSLFNLYAEGYKGFQKAFVPRAVARAFYLARYPRPLHVALAPLFCMGLFYANRKRLMLSWGLVIGVTALVTLVRGLDQPWRGIVDAGVVLGLSYGTVALLAAFFAVLRGRPITVSPQVPD 191          
The following BLAST results are available for this feature:
BLAST of EWM27568.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109835|gb|EWM27568.1|0.000e+0100.00hypothetical protein Naga_100015g35 [Nannochlorops... [more]
gi|223999317|ref|XP_002289331.1|1.470e-5049.75predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|551536295|ref|XP_005756872.1|3.315e-5048.58hypothetical protein EMIHUDRAFT_121633 [Emiliania ... [more]
gi|922863742|gb|KOO31125.1|4.811e-4748.90hypothetical protein Ctob_002280 [Chrysochromulina... [more]
gi|219119275|ref|XP_002180401.1|4.483e-4650.54predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|397644102|gb|EJK76252.1|5.703e-4454.39hypothetical protein THAOC_01998 [Thalassiosira oc... [more]
gi|1210518283|dbj|GAX22895.1|9.719e-4349.12hypothetical protein FisN_24Lh182 [Fistulifera sol... [more]
gi|1210523428|dbj|GAX17752.1|5.529e-4248.54hypothetical protein FisN_24Hh182 [Fistulifera sol... [more]
gi|299117526|emb|CBN75370.1|2.376e-4147.62conserved unknown protein [Ectocarpus siliculosus][more]
gi|1100142198|emb|SFD59587.1|5.834e-3846.95hypothetical protein SAMN02745121_00799 [Nannocyst... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna3124rna3124Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications